Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 6.1e-230 800.4 393 100.0
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.9e-183 646.0 374 83.2
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 2.1e-182 642.5 378 81.2
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 9.8e-180 633.6 374 82.4
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.2e-178 628.6 374 79.1
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 7.0e-178 627.5 353 86.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 3.7e-171 605.1 384 75.3
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 4.1e-170 601.7 375 76.8
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 4.6e-169 598.2 374 76.5
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 7.8e-169 597.4 374 75.4
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.7e-168 596.3 374 75.1
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.5e-167 592.4 374 75.1
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 7.3e-167 590.9 374 75.4
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.6e-166 589.7 374 72.7
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 2.8e-166 589.0 374 75.1
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 6.2e-166 587.8 374 74.9
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 6.2e-166 587.8 374 73.8
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 2.3e-165 585.9 374 71.9
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 4.0e-165 585.1 374 74.3
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 5.2e-165 584.7 374 74.1
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.2e-164 583.6 374 74.3
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 1.2e-164 583.6 373 75.1
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.2e-164 583.6 380 72.9
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 1.2e-164 583.6 375 73.3
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 2.6e-164 582.4 374 73.5
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 7.5e-164 580.9 374 72.5
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 9.8e-164 580.5 383 72.6
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 1.7e-163 579.7 383 72.6
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 2.2e-163 579.3 374 74.3
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 2.2e-163 579.3 374 73.8
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 3.2e-162 575.5 374 73.0
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.1e-162 575.1 374 72.7
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 5.4e-162 574.7 377 72.4
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.6e-161 573.2 374 73.3
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.1e-161 572.8 374 72.2
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 3.0e-160 568.9 374 72.7
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 6.6e-160 567.8 374 72.5
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 4.3e-159 565.1 374 72.5
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 9.5e-159 563.9 374 70.6
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-158 563.5 374 71.1
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.2e-158 563.5 374 71.1
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 2.1e-158 562.8 376 71.3
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.1e-158 562.8 354 74.6
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.1e-158 562.8 374 70.6
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 2.8e-158 562.4 374 70.9
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 6.2e-158 561.2 374 71.4
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.3e-157 559.3 376 71.0
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 2.3e-157 559.3 374 71.9
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 3.1e-157 558.9 374 72.2
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 4.0e-157 558.5 374 71.7
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 5.2e-157 558.1 374 71.4
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 6.8e-157 557.8 374 71.7
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.2e-156 557.0 374 71.7
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.2e-156 557.0 374 71.1
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.2e-156 557.0 374 71.1
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 1.5e-156 556.6 374 71.7
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 7.6e-156 554.3 374 70.9
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 9.9e-156 553.9 374 71.1
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 9.9e-156 553.9 374 70.6
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.9e-155 552.4 385 69.6
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 3.8e-155 552.0 375 70.7
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 4.9e-155 551.6 374 71.1
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 8.4e-155 550.8 373 72.7
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 1.2e-153 547.0 369 70.2
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 4.6e-153 545.0 374 70.1
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 4.6e-153 545.0 374 70.1
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 6.0e-153 544.7 376 69.4
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.3e-152 543.5 374 69.3
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 2.3e-152 542.7 374 70.1
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.0e-152 542.3 374 69.0
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 3.0e-152 542.3 457 59.3
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 3.9e-152 542.0 374 69.8
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 3.9e-152 542.0 374 69.8
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 5.1e-152 541.6 394 67.5
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 5.1e-152 541.6 374 68.7
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 6.6e-152 541.2 374 69.0
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 8.6e-152 540.8 374 69.3
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.5e-151 540.0 374 68.7
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.6e-150 536.6 361 71.2
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 4.7e-150 535.0 374 69.0
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 8.1e-150 534.3 374 71.4
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 1.4e-149 533.5 374 68.4
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.4e-149 532.7 374 68.4
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 5.2e-149 531.6 375 69.3
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.4e-148 528.9 374 70.3
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 4.9e-147 525.0 374 66.6
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 5.4e-146 521.5 377 67.1
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-145 520.4 374 67.6
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 7.8e-145 517.7 374 67.4
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 3.0e-144 515.8 352 69.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 3.9e-144 515.4 374 67.4
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.1e-143 513.8 374 67.1
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 5.6e-143 511.5 352 68.8
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 5.3e-141 505.0 326 72.7
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.3e-139 500.4 374 65.0
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 3.8e-139 498.8 382 61.3
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 1.3e-136 490.3 328 69.8
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.3e-136 489.6 330 69.1
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.3e-136 489.6 330 69.1
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 6.2e-134 481.5 358 66.8
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.8e-131 472.2 352 65.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 6.4e-131 471.5 331 69.2
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 9.3e-130 467.6 375 59.2
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.2e-129 467.2 436 56.9
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 7.9e-129 464.5 271 79.0
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 8.1e-126 454.5 340 63.8
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 1.8e-125 453.4 375 58.4
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.1e-121 439.9 255 78.0
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 2.1e-118 429.9 375 55.2
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.0e-116 423.3 375 60.8
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.8e-109 400.2 223 83.4
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.2e-108 397.5 294 66.0
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.6e-105 385.6 201 89.6
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 7.7e-92 341.7 180 86.1
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.4e-87 325.9 245 66.5
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 6.8e-80 302.0 379 42.7
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 8.8e-80 301.6 381 43.3
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.3e-75 287.7 227 61.7
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.1e-74 284.6 158 79.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 4.2e-74 282.7 254 55.1
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 2.0e-71 273.9 378 42.1
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 4.5e-68 262.7 199 63.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.7e-62 244.2 144 78.5
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.9e-51 206.5 126 73.8
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 2.9e-46 190.3 108 79.6
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.2e-45 186.8 373 29.8
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 3.3e-42 176.8 154 58.4
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 9.5e-42 175.3 87 92.0
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.7e-38 164.5 150 58.0
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 3.0e-35 153.7 149 52.3
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.6e-28 131.3 119 60.5
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.0e-28 129.4 69 88.4
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.5e-26 124.8 82 64.6
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 4.3e-26 123.2 72 72.2
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 5.6e-26 122.9 73 80.8
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 8.1e-17 92.4 221 31.7
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 1.2e-15 88.6 51 78.4
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.5e-15 86.7 54 79.6
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.3e-14 85.1 44 86.4
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.2e-13 80.5 168 33.3
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 2.1e-12 77.8 83 47.0
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 7.9e-12 75.9 48 70.8
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 3.9e-11 73.6 271 24.7
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 4.3e-10 70.1 42 69.0
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 3.7e-09 67.0 42 66.7
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 3.7e-09 67.0 31 93.5
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 5.3e-08 63.2 41 61.0
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 9.0e-08 62.4 36 69.4
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.3e-06 58.5 46 56.5
MD10G1124300 Malus domestica HOM05D000347 ORTHO05D001997 8.4e-06 55.8 97 24.7


User provided reference genes

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