Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1623.2 835 100.0
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1384.8 855 83.6
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1379.8 895 80.7
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1367.1 850 83.2
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1345.9 851 81.6
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1317.4 852 80.5
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1291.6 803 82.9
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1278.1 850 78.0
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1271.9 846 78.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1253.0 847 76.7
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1248.4 866 73.0
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1244.2 840 76.7
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 846 75.9
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 860 75.1
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1236.1 846 75.8
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1235.3 872 74.4
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1230.7 846 75.8
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1226.8 866 74.2
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 879 72.8
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 864 73.8
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1224.9 868 74.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 852 73.6
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1224.2 861 74.4
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1223.4 872 73.4
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1221.5 855 74.9
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1219.1 844 74.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 889 72.4
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1216.8 887 72.4
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1216.4 886 72.5
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1215.3 887 72.4
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1215.3 878 73.6
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1214.9 842 75.4
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 887 72.3
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 873 73.2
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 873 73.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1213.0 869 73.2
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 873 72.3
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1210.3 872 72.9
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 872 72.4
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1207.2 855 74.3
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 821 74.8
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 873 72.4
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 858 73.0
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1200.3 874 71.9
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1198.7 855 73.2
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1196.8 908 69.2
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1196.4 917 69.6
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1196.0 935 68.2
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 840 73.5
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1192.6 859 73.1
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1191.4 846 73.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1190.6 876 71.2
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 858 71.8
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1190.3 869 71.8
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 832 73.9
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 901 69.3
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1186.0 872 71.8
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1185.2 842 72.3
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1183.3 881 70.9
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 901 69.3
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1181.4 874 71.4
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1177.5 856 72.8
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1175.2 914 68.6
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1174.8 890 69.7
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 801 75.5
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1172.9 821 74.4
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1172.1 860 71.2
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1168.3 859 71.6
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1161.7 874 70.5
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1161.7 860 70.0
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 825 73.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 966 66.1
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1159.8 879 70.5
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 860 70.1
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1158.7 874 70.3
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 844 71.1
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1155.2 874 69.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1152.5 931 66.7
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 871 70.1
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1147.9 880 69.4
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 906 67.5
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 870 69.5
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1147.5 872 69.6
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1146.7 881 68.8
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 873 69.3
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 921 66.6
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1142.1 891 67.8
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1139.8 928 64.9
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1133.6 867 68.6
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1132.5 867 68.4
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1130.9 811 72.4
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1129.0 876 67.2
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 875 68.2
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 841 70.7
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1126.7 926 64.3
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1126.3 1010 61.3
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1122.1 876 67.9
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1119.4 872 66.5
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1117.4 881 67.8
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1112.1 881 67.4
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1106.7 882 66.6
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1100.5 897 66.3
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1097.0 850 67.6
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1092.0 836 69.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1087.4 845 67.8
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1087.0 835 69.5
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 5.1e-311 1070.8 899 65.2
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 2.5e-310 1068.5 842 64.7
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 2.9e-306 1055.0 737 71.8
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 1.8e-300 1035.8 828 65.0
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 5.3e-300 1034.2 856 62.5
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 4.2e-289 998.0 692 72.7
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 9.1e-284 980.3 715 71.0
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.0e-278 962.6 904 60.1
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 4.5e-275 951.4 687 72.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 8.5e-274 947.2 707 72.6
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 3.7e-269 931.8 845 61.7
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 7.5e-262 907.5 598 76.1
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 1.7e-261 906.4 954 55.0
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 1.6e-259 899.8 852 54.8
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 1.0e-247 860.5 903 53.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.5e-246 856.7 505 82.4
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.6e-243 846.7 831 56.0
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 9.9e-230 800.8 669 63.2
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.8e-192 675.6 624 60.1
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 6.2e-192 675.2 451 77.8
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 6.9e-175 618.6 507 66.1
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.9e-171 605.1 338 84.6
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.9e-165 586.6 384 74.5
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 2.0e-161 573.9 371 74.9
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.0e-158 563.9 541 59.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.5e-158 562.8 341 78.3
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.2e-155 554.7 361 74.5
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 1.4e-143 514.6 718 43.0
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 8.9e-138 495.4 838 37.5
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.3e-128 464.9 291 78.0
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 2.5e-124 450.7 980 34.5
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 4.7e-123 446.4 589 47.4
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 7.3e-116 422.5 486 54.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.3e-112 411.8 459 54.7
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.9e-101 373.6 327 68.8
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.7e-96 358.2 297 62.6
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 8.7e-93 345.9 1047 28.3
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 2.9e-72 277.7 166 78.9
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.6e-46 192.2 123 87.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 3.0e-45 188.0 327 40.4
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 3.7e-43 181.0 104 82.7
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 3.1e-42 177.9 107 84.1
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-36 159.5 121 61.2
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 7.5e-36 156.8 114 68.4
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 2.3e-24 118.6 77 77.9
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 2.1e-22 112.1 84 71.4
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 2.1e-22 112.1 96 69.8
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 8.3e-19 100.1 61 75.4
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.5e-15 86.7 92 54.3
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 4.7e-14 84.3 68 66.2
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 4.4e-12 77.8 57 63.2
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 5.8e-12 77.4 66 54.5
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 9.8e-12 76.6 58 67.2
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.9e-11 75.1 45 73.3
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.9e-10 72.4 53 71.7
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 2.3e-08 65.5 41 65.9
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.0e-08 65.1 47 70.2
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 6.6e-08 63.9 52 63.5


User provided reference genes

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