Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0202100 Rhododendron simsii HOM05D002990 ORTHO05D025120 1.8e-24 115.2 60 100.0
Rhsim05G0113900 Rhododendron simsii HOM05D002990 ORTHO05D003954 2.9e-22 107.8 60 93.3
vmacro19861 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 3.7e-22 107.5 60 93.3
Rhsim02G0096400 Rhododendron simsii HOM05D002990 ORTHO05D003954 4.1e-21 104.0 60 86.7
vmacro15752 Vaccinium macrocarpon HOM05D002990 ORTHO05D003954 2.7e-20 101.3 60 83.3
CSS0019515 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 5.0e-19 97.1 60 80.0
CSS0049984 Camellia sinensis var. sinensis HOM05D002990 ORTHO05D003954 8.6e-19 96.3 60 78.3
Dinv19419 Davidia involucrata HOM05D002990 ORTHO05D003954 1.2e-17 92.4 60 76.7
PSO210G5298 Papaver somniferum HOM05D002990 ORTHO05D003954 1.2e-17 92.4 60 78.3
GSVIVG01012108001 Vitis vinifera HOM05D002990 ORTHO05D003954 1.2e-17 92.4 60 75.0
Actinidia01610 Actinidia chinensis HOM05D002990 ORTHO05D003954 1.6e-17 92.0 60 75.0
Lj5C267G4 Lonicera japonica HOM05D002990 ORTHO05D003954 2.8e-17 91.3 60 78.3
TAR381G1467 Trochodendron aralioides HOM05D002990 ORTHO05D003954 2.8e-17 91.3 60 75.0
DCAR_001748 Daucus carota HOM05D002990 ORTHO05D003954 6.2e-17 90.1 60 75.0
Cc02_g23240 Coffea canephora HOM05D002990 ORTHO05D003954 1.4e-16 89.0 60 75.0
PSO832G0554 Papaver somniferum HOM05D002990 ORTHO05D003954 1.4e-16 89.0 60 75.0
FvH4_5g25700 Fragaria vesca HOM05D002990 ORTHO05D003954 1.8e-16 88.6 60 75.0
FAN04G1958 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.8e-16 88.6 60 75.0
FAN08G0961 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.8e-16 88.6 60 75.0
FAN13G0995 Fragaria x ananassa HOM05D002990 ORTHO05D003954 1.8e-16 88.6 60 75.0
Oeu045917.5 Olea europaea HOM05D002990 ORTHO05D003954 1.8e-16 88.6 60 71.7
RcHm_v2.0_Chr7g0216031 Rosa chinensis HOM05D002990 ORTHO05D003954 1.8e-16 88.6 60 75.0
Sed0013419 Sechium edule HOM05D002990 ORTHO05D003954 2.3e-16 88.2 60 73.3
TAR628G0664 Trochodendron aralioides HOM05D002990 ORTHO05D003954 2.3e-16 88.2 60 71.7
Lj9C298T10 Lonicera japonica HOM05D002990 ORTHO05D003954 3.1e-16 87.8 60 73.3
CsaV3_6G049970 Cucumis sativus L. HOM05D002990 ORTHO05D003954 4.0e-16 87.4 60 73.3
ECA248G3257 Erigeron canadensis HOM05D002990 ORTHO05D003954 4.0e-16 87.4 60 73.3
Sed0007199 Sechium edule HOM05D002990 ORTHO05D003954 4.0e-16 87.4 60 75.0
ClCG01G022800 Citrullus lanatus HOM05D002990 ORTHO05D003954 5.2e-16 87.0 58 74.1
ClCG10G021340 Citrullus lanatus HOM05D002990 ORTHO05D003954 6.8e-16 86.7 60 73.3
MELO3C009240.2 Cucumis melo HOM05D002990 ORTHO05D003954 6.8e-16 86.7 60 71.7
Gohir.A12G047200 Gossypium hirsutum HOM05D002990 ORTHO05D003954 6.8e-16 86.7 58 72.4
Gohir.D12G046000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 6.8e-16 86.7 58 72.4
Gorai.008G048600 Gossypium raimondii HOM05D002990 ORTHO05D003954 6.8e-16 86.7 58 72.4
MBI14_g22163_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 6.8e-16 86.7 60 68.3
Prupe.3G005000 Prunus persica HOM05D002990 ORTHO05D003954 6.8e-16 86.7 60 73.3
Gohir.A11G227300 Gossypium hirsutum HOM05D002990 ORTHO05D003954 8.9e-16 86.3 60 70.0
Gohir.D11G230000 Gossypium hirsutum HOM05D002990 ORTHO05D003954 8.9e-16 86.3 60 70.0
Gorai.003G067800 Gossypium raimondii HOM05D002990 ORTHO05D003954 8.9e-16 86.3 60 70.0
Nn5g27504 Nelumbo nucifera HOM05D002990 ORTHO05D003954 8.9e-16 86.3 58 72.4
Potri.012G125500 Populus trichocarpa HOM05D002990 ORTHO05D003954 8.9e-16 86.3 60 73.3
Cc00_g30140 Coffea canephora HOM05D002990 ORTHO05D025120 1.2e-15 85.9 60 71.7
CsaV3_3G034710 Cucumis sativus L. HOM05D002990 ORTHO05D003954 1.2e-15 85.9 60 71.7
PGR042G1192 Punica granatum HOM05D002990 ORTHO05D003954 1.2e-15 85.9 60 70.0
Cc08_g04530 Coffea canephora HOM05D002990 ORTHO05D025120 1.5e-15 85.5 60 71.7
Duzib248G1041 Durio zibethinus HOM05D002990 ORTHO05D003954 1.5e-15 85.5 60 70.0
Gohir.D01G132400 Gossypium hirsutum HOM05D002990 ORTHO05D003954 1.5e-15 85.5 62 71.0
CiPaw.05G047800 Carya illinoinensis HOM05D002990 ORTHO05D003954 2.0e-15 85.1 60 68.3
HanXRQChr06g0181631 Helianthus annuus HOM05D002990 ORTHO05D003954 2.0e-15 85.1 58 72.4
Atru.chr10.452 Acer truncatum HOM05D002990 ORTHO05D003954 2.6e-15 84.7 60 70.0
Aqoxy3G02903 Aquilegia oxysepala HOM05D002990 ORTHO05D003954 2.6e-15 84.7 60 71.7
AUR62016395 Chenopodium quinoa HOM05D002990 ORTHO05D003954 2.6e-15 84.7 60 71.7
Eucgr.E04296 Eucalyptus grandis HOM05D002990 ORTHO05D003954 2.6e-15 84.7 60 71.7
MBI19_g42889_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 2.6e-15 84.7 60 70.0
COL.COLO4_17647 Corchorus olitorius HOM05D002990 ORTHO05D003954 3.4e-15 84.3 60 66.7
Haze_16449 Corylus avellana HOM05D002990 ORTHO05D003954 3.4e-15 84.3 60 70.0
Manes.01G123400 Manihot esculenta HOM05D002990 ORTHO05D003954 3.4e-15 84.3 60 68.3
Gorai.002G164000 Gossypium raimondii HOM05D002990 ORTHO05D003954 4.4e-15 84.0 62 69.4
Manes.02G080900 Manihot esculenta HOM05D002990 ORTHO05D003954 4.4e-15 84.0 60 68.3
Peaxi162Scf00011g01423 Petunia axillaris HOM05D002990 ORTHO05D003954 4.4e-15 84.0 60 66.7
THA.LOC104823159 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 4.4e-15 84.0 60 70.0
CDE07G1838 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 5.8e-15 83.6 58 69.0
Gohir.A01G141326 Gossypium hirsutum HOM05D002990 ORTHO05D003954 5.8e-15 83.6 62 69.4
HanXRQChr11g0350821 Helianthus annuus HOM05D002990 ORTHO05D003954 5.8e-15 83.6 60 66.7
TWI63G1786 Tripterygium wilfordii HOM05D002990 ORTHO05D003954 5.8e-15 83.6 60 68.3
MSTRG.27863 Avicennia marina HOM05D002990 ORTHO05D003954 7.5e-15 83.2 60 65.0
Haze_04601 Corylus avellana HOM05D002990 ORTHO05D003954 7.5e-15 83.2 60 68.3
QL11p013908 Quercus lobata HOM05D002990 ORTHO05D003954 7.5e-15 83.2 58 67.2
QL11p014419 Quercus lobata HOM05D002990 ORTHO05D003954 7.5e-15 83.2 58 67.2
CAN.G855.9 Capsicum annuum HOM05D002990 ORTHO05D003954 9.8e-15 82.8 60 63.3
MD17G1280500 Malus domestica HOM05D002990 ORTHO05D003954 9.8e-15 82.8 60 68.3
PSO017G7401 Papaver somniferum HOM05D002990 ORTHO05D003954 9.8e-15 82.8 60 70.0
PSO675G6402 Papaver somniferum HOM05D002990 ORTHO05D003954 9.8e-15 82.8 60 70.0
Nitab4.5_0006171g0030 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.3e-14 82.4 60 66.7
CANSAT35G0772 Cannabis sativa HOM05D002990 ORTHO05D003954 1.7e-14 82.0 60 68.3
Migut.N00842 Erythranthe guttata HOM05D002990 ORTHO05D003954 1.7e-14 82.0 60 68.3
Nitab4.5_0000787g0120 Nicotiana tabacum HOM05D002990 ORTHO05D003954 1.7e-14 82.0 58 67.2
Cpa.g.sc30.148 Carica papaya HOM05D002990 ORTHO05D003954 2.2e-14 81.6 60 66.7
Migut.B00765 Erythranthe guttata HOM05D002990 ORTHO05D003954 2.2e-14 81.6 60 68.3
TPR.G2492 Trifolium pratense HOM05D002990 ORTHO05D003954 2.2e-14 81.6 60 71.7
QL02p098931 Quercus lobata HOM05D002990 ORTHO05D003954 2.9e-14 81.3 58 67.2
Thecc.02G008000 Theobroma cacao HOM05D002990 ORTHO05D003954 2.9e-14 81.3 60 65.0
Duzib132G0187 Durio zibethinus HOM05D002990 ORTHO05D003954 3.7e-14 80.9 60 66.7
Glyma.20G111200 Glycine max HOM05D002990 ORTHO05D003954 3.7e-14 80.9 60 71.7
Sabra15G0139800 Salix brachista HOM05D002990 ORTHO05D003954 3.7e-14 80.9 60 66.7
Solyc10g038120.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 3.7e-14 80.9 60 66.7
EL10Ac9g21942 Beta vulgaris HOM05D002990 ORTHO05D003954 4.9e-14 80.5 60 68.3
CiPaw.10G063800 Carya illinoinensis HOM05D002990 ORTHO05D003954 4.9e-14 80.5 60 66.7
MBI19_g28319_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 4.9e-14 80.5 61 68.9
PGR004G2876 Punica granatum HOM05D002990 ORTHO05D003954 4.9e-14 80.5 60 68.3
PGR065G0001 Punica granatum HOM05D002990 ORTHO05D003954 4.9e-14 80.5 60 68.3
TAR625G1487 Trochodendron aralioides HOM05D002990 ORTHO05D003954 4.9e-14 80.5 58 62.1
MSTRG.16488 Avicennia marina HOM05D002990 ORTHO05D003954 6.4e-14 80.1 60 65.0
Psat3g059840 Pisum sativum HOM05D002990 ORTHO05D003954 6.4e-14 80.1 60 68.3
Lsat_1_v5_gn_1_50861 Lactuca sativa HOM05D002990 ORTHO05D003954 8.3e-14 79.7 64 65.6
Lalb_Chr21g0309131 Lupinus albus HOM05D002990 ORTHO05D003954 8.3e-14 79.7 60 68.3
Sopen10g011180 Solanum pennellii HOM05D002990 ORTHO05D003954 8.3e-14 79.7 60 65.0
arahy.Tifrunner.gnm1.ann1.36FIU4 Arachis hypogaea HOM05D002990 ORTHO05D003954 1.1e-13 79.3 60 68.3
arahy.Tifrunner.gnm1.ann1.MNY5KW Arachis hypogaea HOM05D002990 ORTHO05D003954 1.1e-13 79.3 60 68.3
Ca_25658_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 1.1e-13 79.3 60 68.3
THA.LOC104826886 Tarenaya hassleriana HOM05D002990 ORTHO05D003954 1.1e-13 79.3 60 68.3
TPR.G6118 Trifolium pratense HOM05D002990 ORTHO05D003954 1.1e-13 79.3 60 68.3
Ca_25659_v3 Cicer arietinum L. HOM05D002990 ORTHO05D003954 1.4e-13 79.0 60 68.3
Lj5g0018242 Lotus japonicus HOM05D002990 ORTHO05D003954 1.4e-13 79.0 60 70.0
Lalb_Chr03g0036401 Lupinus albus HOM05D002990 ORTHO05D003954 1.4e-13 79.0 60 66.7
Lj5g0007499 Lotus japonicus HOM05D002990 ORTHO05D003954 1.9e-13 78.6 60 70.0
Lalb_Chr06g0166381 Lupinus albus HOM05D002990 ORTHO05D003954 1.9e-13 78.6 58 69.0
Peaxi162Scf00150g01615 Petunia axillaris HOM05D002990 ORTHO05D003954 1.9e-13 78.6 60 65.0
Lalb_Chr02g0146241 Lupinus albus HOM05D002990 ORTHO05D003954 2.4e-13 78.2 58 69.0
Medtr1g111900 Medicago truncatula HOM05D002990 ORTHO05D003954 2.4e-13 78.2 60 68.3
Phvul.007G023200 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 2.4e-13 78.2 60 68.3
Hund09109 Selenicereus undatus HOM05D002990 ORTHO05D003954 2.4e-13 78.2 60 66.7
SGA_v2.0_scaffold272G46387 Striga asiatica HOM05D002990 ORTHO05D003954 2.4e-13 78.2 60 66.7
SGA_v2.0_scaffold456G51925 Striga asiatica HOM05D002990 ORTHO05D003954 2.4e-13 78.2 60 65.0
VMungo0720G1386 Vigna mungo HOM05D002990 ORTHO05D003954 2.4e-13 78.2 60 68.3
Cpa.g.sc30.147 Carica papaya HOM05D002990 ORTHO05D003954 3.2e-13 77.8 60 65.0
Potri.015G125400 Populus trichocarpa HOM05D002990 ORTHO05D003954 3.2e-13 77.8 60 66.7
Ah.06g187310 Amaranthus hybridus HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 66.7
Cc00_g35830 Coffea canephora HOM05D002990 ORTHO05D025120 4.1e-13 77.4 49 77.6
Nitab4.5_0000667g0050 Nicotiana tabacum HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 63.3
Psat0s1904g0080 Pisum sativum HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 65.0
Sc17g0007790 Simmondsia chinensis HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 65.0
Solyc01g103480.3 Solanum lycopersicum HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 60.0
Sopen01g045840 Solanum pennellii HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 60.0
PGSC0003DMG400024913 Solanum tuberosum HOM05D002990 ORTHO05D003954 4.1e-13 77.4 60 60.0
arahy.Tifrunner.gnm1.ann1.SXBZ4U Arachis hypogaea HOM05D002990 ORTHO05D003954 5.4e-13 77.0 60 65.0
arahy.Tifrunner.gnm1.ann1.VAK2YC Arachis hypogaea HOM05D002990 ORTHO05D003954 5.4e-13 77.0 60 65.0
Nitab4.5_0001144g0080 Nicotiana tabacum HOM05D002990 ORTHO05D003954 5.4e-13 77.0 58 63.8
Psat0s1904g0040 Pisum sativum HOM05D002990 ORTHO05D003954 5.4e-13 77.0 60 66.7
Ah.01g020920 Amaranthus hybridus HOM05D002990 ORTHO05D003954 7.1e-13 76.6 60 65.0
Sabra12G0094700 Salix brachista HOM05D002990 ORTHO05D003954 7.1e-13 76.6 70 61.4
Glyma.10G278200 Glycine max HOM05D002990 ORTHO05D003954 1.2e-12 75.9 60 66.7
MBI15_g43444_MAGBIO Magnolia biondii HOM05D002990 ORTHO05D003954 1.6e-12 75.5 72 56.9
Medtr2g101180 Medicago truncatula HOM05D002990 ORTHO05D003954 2.1e-12 75.1 60 63.3
Lsat_1_v5_gn_2_24380 Lactuca sativa HOM05D002990 ORTHO05D003954 2.7e-12 74.7 51 70.6
Glyma.11G114600 Glycine max HOM05D002990 ORTHO05D003954 3.5e-12 74.3 60 61.7
Aa31LG11G5670 Aethionema arabicum HOM05D002990 ORTHO05D003954 4.6e-12 73.9 62 64.5
MSTRG.5205 Avicennia marina HOM05D002990 ORTHO05D003954 1.0e-11 72.8 60 60.0
CARHR277810 Cardamine hirsuta HOM05D002990 ORTHO05D003954 1.0e-11 72.8 63 61.9
BcaB05g21739 Brassica carinata HOM05D002990 ORTHO05D003954 1.3e-11 72.4 63 61.9
Zm00001eb138410 Zea mays HOM05D002990 ORTHO05D003954 1.7e-11 72.0 60 65.0
Zm00001eb411050 Zea mays HOM05D002990 ORTHO05D003954 1.7e-11 72.0 60 65.0
A03p02050 Brassica napus HOM05D002990 ORTHO05D003954 2.3e-11 71.6 61 62.3
BraA03t09574Z Brassica rapa HOM05D002990 ORTHO05D003954 2.3e-11 71.6 61 62.3
CARHR208250 Cardamine hirsuta HOM05D002990 ORTHO05D003954 2.3e-11 71.6 62 61.3
AUR62023824 Chenopodium quinoa HOM05D002990 ORTHO05D003954 2.3e-11 71.6 60 58.3
Thhalv10013243m.g Eutrema salsugineum HOM05D002990 ORTHO05D003954 2.3e-11 71.6 62 61.3
Glyma.12G040500 Glycine max HOM05D002990 ORTHO05D003954 2.3e-11 71.6 60 58.3
MD09G1288200 Malus domestica HOM05D002990 ORTHO05D003954 2.3e-11 71.6 56 62.5
Phvul.011G042400 Phaseolus vulgaris HOM05D002990 ORTHO05D003954 2.3e-11 71.6 60 63.3
AT5G05010 Arabidopsis thaliana HOM05D002990 ORTHO05D003954 3.0e-11 71.2 60 61.7
BcaC03g13141 Brassica carinata HOM05D002990 ORTHO05D003954 3.0e-11 71.2 62 61.3
C02p02130 Brassica napus HOM05D002990 ORTHO05D003954 3.0e-11 71.2 62 61.3
BolC2t06181H Brassica oleracea HOM05D002990 ORTHO05D003954 3.0e-11 71.2 62 61.3
BraA02t04830Z Brassica rapa HOM05D002990 ORTHO05D003954 3.0e-11 71.2 62 61.3
AL6G14720 Arabidopsis lyrata HOM05D002990 ORTHO05D003954 3.9e-11 70.9 60 63.3
Medtr1g111910 Medicago truncatula HOM05D002990 ORTHO05D003954 3.9e-11 70.9 60 65.0
C03p02400 Brassica napus HOM05D002990 ORTHO05D003954 5.1e-11 70.5 61 60.7
Carub.0006s0395 Capsella rubella HOM05D002990 ORTHO05D003954 5.1e-11 70.5 62 59.7
VMungo1127G2180 Vigna mungo HOM05D002990 ORTHO05D003954 6.6e-11 70.1 60 60.0
BcaC06g32216 Brassica carinata HOM05D002990 ORTHO05D003954 8.6e-11 69.7 62 59.7
BolC9t59926H Brassica oleracea HOM05D002990 ORTHO05D003954 8.6e-11 69.7 62 59.7
Sp6g37790 Schrenkiella parvula HOM05D002990 ORTHO05D003954 8.6e-11 69.7 62 61.3
SMO134G0021 Selaginella moellendorffii HOM05D002990 ORTHO05D003954 8.6e-11 69.7 60 58.3
Os05g0310800 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 1.1e-10 69.3 60 60.0
Os05g0311000 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 1.1e-10 69.3 60 60.0
Sc09g0003570 Simmondsia chinensis HOM05D002990 ORTHO05D003954 1.1e-10 69.3 48 66.7
SEGI_30717 Sequoiadendron giganteum HOM05D002990 ORTHO05D003954 1.5e-10 68.9 60 60.0
unitig_747.g21275 Utricularia gibba HOM05D002990 ORTHO05D003954 1.5e-10 68.9 60 53.3
ATR1132G100 Amborella trichopoda HOM05D002990 ORTHO05D003954 1.6e-09 65.5 60 51.7
ATR0824G151 Amborella trichopoda HOM05D002990 ORTHO05D003954 3.6e-09 64.3 60 53.3
Os01g0833700 Oryza sativa ssp. japonica HOM05D002990 ORTHO05D003954 8.1e-09 63.2 60 55.0
ECA238G4279 Erigeron canadensis HOM05D002990 ORTHO05D003954 1.4e-08 62.4 44 68.2
Mapoly0022s0045 Marchantia polymorpha HOM05D002990 ORTHO05D003954 1.8e-08 62.0 60 48.3
Pp3c20_16550 Physcomitrium patens HOM05D002990 ORTHO05D003954 2.3e-08 61.6 60 51.7
Pp3c23_8750 Physcomitrium patens HOM05D002990 ORTHO05D003954 2.3e-08 61.6 60 51.7
Pp3c8_9870 Physcomitrium patens HOM05D002990 ORTHO05D003954 1.2e-07 59.3 60 48.3
BraA10t45158Z Brassica rapa HOM05D002990 ORTHO05D003954 1.5e-07 58.9 85 43.5
Pp3c24_4890 Physcomitrium patens HOM05D002990 ORTHO05D003954 2.0e-07 58.5 60 48.3
CDE04G3634 Ceratophyllum demersum HOM05D002990 ORTHO05D003954 2.6e-07 58.2 38 73.7
CBR_g30127 Chara braunii HOM05D002990 ORTHO05D003954 9.9e-07 56.2 60 46.7


User provided reference genes

Program Settings