Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0139900 Rhododendron simsii HOM05D007651 ORTHO05D000898 4.1e-307 1057.4 581 100.0
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 3.8e-220 768.5 735 67.3
Rhsim04G0115000 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.0e-148 531.2 463 73.9
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 2.9e-103 380.2 257 76.3
Rhsim09G0109800 Rhododendron simsii HOM05D007651 ORTHO05D000898 3.2e-102 376.7 259 74.9
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 1.0e-52 212.2 606 27.6
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 2.9e-39 167.5 279 35.8
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.7e-37 160.2 272 35.7
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.1e-33 149.1 238 37.0
Rhsim01G0153500 Rhododendron simsii HOM05D011344 ORTHO05D016379 8.6e-31 139.4 212 37.7
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 1.0e-23 115.9 242 26.9
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 2.1e-21 108.2 242 26.0
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 4.7e-21 107.1 316 23.4
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 6.2e-21 106.7 240 26.2
Hma1.2p1_0381F.1_g139960 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 8.0e-21 106.3 261 26.4
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 1.1e-20 105.9 169 33.7
CSS0025909 Camellia sinensis var. sinensis HOM05D066949 ORTHO05D043282 1.8e-20 105.1 110 41.8
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 1.8e-20 105.1 240 25.8
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.3e-20 104.8 169 34.9
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 2.3e-20 104.8 239 25.5
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 6.8e-20 103.2 239 25.1
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 8.9e-20 102.8 306 22.2
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 8.9e-20 102.8 239 24.7
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 2.0e-19 101.7 239 24.7
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 2.0e-19 101.7 217 31.3
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 2.6e-19 101.3 239 25.1
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 2.6e-19 101.3 239 24.7
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 2.6e-19 101.3 239 24.7
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 2.6e-19 101.3 239 24.7
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 2.6e-19 101.3 239 24.7
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 3.4e-19 100.9 239 25.5
Duzib106G0239 Durio zibethinus HOM05D007651 ORTHO05D000898 4.4e-19 100.5 239 24.3
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 4.4e-19 100.5 239 24.3
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 9.8e-19 99.4 239 24.3
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 1.3e-18 99.0 239 24.7
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 1.3e-18 99.0 239 24.7
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 1.7e-18 98.6 240 24.6
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 2.2e-18 98.2 239 24.3
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 2.9e-18 97.8 290 22.1
CSS0020998 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D000898 4.9e-18 97.1 239 24.7
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 4.9e-18 97.1 240 24.2
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 6.4e-18 96.7 238 23.5
Nn3g19299 Nelumbo nucifera HOM05D007651 ORTHO05D000898 6.4e-18 96.7 327 22.0
Rhsim08G0168100 Rhododendron simsii HOM05D007651 ORTHO05D002997 6.4e-18 96.7 212 32.5
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 8.3e-18 96.3 239 24.3
CSS0035836 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 8.3e-18 96.3 173 34.1
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 1.1e-17 95.9 239 25.1
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 1.4e-17 95.5 240 23.8
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 1.4e-17 95.5 259 24.3
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 3.2e-17 94.4 239 25.9
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 5.4e-17 93.6 240 23.3
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 7.1e-17 93.2 239 23.8
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 9.2e-17 92.8 218 24.8
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 9.2e-17 92.8 218 24.8
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 9.2e-17 92.8 239 23.8
HanXRQChr09g0262351 Helianthus annuus HOM05D007651 ORTHO05D000898 1.2e-16 92.4 239 23.8
HanXRQChr11g0325241 Helianthus annuus HOM05D007651 ORTHO05D000898 1.6e-16 92.0 239 24.3
Lsat_1_v5_gn_4_155061 Lactuca sativa HOM05D007651 ORTHO05D000898 1.6e-16 92.0 239 23.8
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 2.7e-16 91.3 228 22.8
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 3.5e-16 90.9 228 24.1
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.6e-16 90.5 218 24.8
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 7.8e-16 89.7 256 25.0
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 7.8e-16 89.7 239 23.8
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 1.0e-15 89.4 239 23.4
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.7e-15 88.6 218 24.8
Potri.010G214500 Populus trichocarpa HOM05D007651 ORTHO05D000898 8.6e-15 86.3 268 25.4
FAN18G0847 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.1e-14 85.9 244 24.2
Sabra10G0165800 Salix brachista HOM05D007651 ORTHO05D000898 1.1e-14 85.9 270 25.6
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.3e-14 84.3 254 24.4
Rhsim04G0060600 Rhododendron simsii HOM05D007651 ORTHO05D000898 2.1e-13 81.6 231 27.3
Prupe.7G070100 Prunus persica HOM05D004096 ORTHO05D000898 3.6e-13 80.9 251 23.9
AUR62039973 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.7e-13 80.5 194 27.8
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 8.1e-13 79.7 235 23.4
FvH4_7g31230 Fragaria vesca HOM05D000045 ORTHO05D000067 1.1e-12 79.3 243 22.6
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 1.2e-11 75.9 218 23.9
CANSAT35G0470 Cannabis sativa HOM05D029669 ORTHO05D010823 4.4e-11 73.9 213 22.5
FvH4_4g05321 Fragaria vesca HOM05D004096 ORTHO05D000898 5.8e-11 73.6 232 22.0
AUR62025505 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.7e-10 72.0 231 23.8
Rhsim01G0159600 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.7e-10 72.0 241 27.8
FAN06G1954 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.1e-09 69.3 228 25.0
AUR62003732 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.4e-09 68.2 302 22.8
Ciclev10033783m.g Citrus clementina HOM05D008396 ORTHO05D000898 3.2e-09 67.8 79 39.2
Dinv12671 Davidia involucrata HOM05D008396 ORTHO05D000898 3.2e-09 67.8 196 27.0
FAN13G0792 Fragaria x ananassa HOM05D017852 ORTHO05D000898 3.2e-09 67.8 233 21.9
RcHm_v2.0_Chr2g0155601 Rosa chinensis HOM05D004096 ORTHO05D000898 4.1e-09 67.4 238 22.7
AUR62000408 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.4e-09 67.0 231 23.4
AUR62016762 Chenopodium quinoa HOM05D006463 ORTHO05D002997 5.4e-09 67.0 206 25.2
Ciclev10021259m.g Citrus clementina HOM05D008396 ORTHO05D000898 1.2e-08 65.9 75 41.3
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 1.6e-08 65.5 198 23.2
Atru.chr10.1446 Acer truncatum HOM05D004096 ORTHO05D000898 2.1e-08 65.1 190 23.7
CANSAT21G2496 Cannabis sativa HOM05D009769 ORTHO05D010823 2.7e-08 64.7 255 20.0
Ciclev10002333m.g Citrus clementina HOM05D008396 ORTHO05D000898 3.5e-08 64.3 75 40.0
AUR62039695 Chenopodium quinoa HOM05D002461 ORTHO05D000898 4.6e-08 63.9 208 26.4
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 6.0e-08 63.5 196 24.0
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 7.8e-08 63.2 238 23.5
EL10As3g23330 Beta vulgaris HOM05D000012 ORTHO05D018535 1.3e-07 62.4 239 25.5
Dinv07106 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-07 62.4 93 33.3
Dinv08235 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-07 62.0 87 33.3
Rhsim02G0161600 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.7e-07 62.0 163 26.4
Os02g0467500 Oryza sativa ssp. japonica HOM05D007651 ORTHO05D010881 3.0e-07 61.2 231 19.9
Dinv14218 Davidia involucrata HOM05D008396 ORTHO05D000898 3.9e-07 60.8 111 29.7
RcHm_v2.0_Chr3g0478081 Rosa chinensis HOM05D004096 ORTHO05D000898 5.1e-07 60.5 251 22.3
Hund26057 Selenicereus undatus HOM05D008769 ORTHO05D010955 5.1e-07 60.5 248 23.4
Dinv15468 Davidia involucrata HOM05D008396 ORTHO05D000898 6.6e-07 60.1 68 38.2
ECA247G0643 Erigeron canadensis HOM05D002069 ORTHO05D002997 6.6e-07 60.1 215 21.4
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 8.6e-07 59.7 108 30.6
Dinv13152 Davidia involucrata HOM05D008396 ORTHO05D000898 8.6e-07 59.7 108 30.6
RcHm_v2.0_Chr7g0204351 Rosa chinensis HOM05D007993 ORTHO05D000898 1.1e-06 59.3 215 20.5
Dinv24488 Davidia involucrata HOM05D008396 ORTHO05D000898 1.5e-06 58.9 68 38.2
Cc02_g32350 Coffea canephora HOM05D002461 ORTHO05D000898 1.9e-06 58.5 114 34.2
RcHm_v2.0_Chr2g0155611 Rosa chinensis HOM05D010969 ORTHO05D015656 1.9e-06 58.5 248 22.6
AUR62041478 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-06 58.2 232 20.3
Ah.07g200270 Amaranthus hybridus HOM05D014732 ORTHO05D000898 4.3e-06 57.4 213 24.4
FAN17G2177 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.6e-06 57.0 218 21.1
FvH4_3g44640 Fragaria vesca HOM05D001313 ORTHO05D001590 7.3e-06 56.6 83 30.1
FAN14G2992 Fragaria x ananassa HOM05D004096 ORTHO05D010213 9.6e-06 56.2 218 21.1
FAN23G0656 Fragaria x ananassa HOM05D004096 ORTHO05D010213 9.6e-06 56.2 218 21.1


User provided reference genes

Program Settings