Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.4e-173 612.1 309 100.0
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 5.9e-87 325.1 324 59.6
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.5e-74 283.9 317 55.8
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.1e-69 267.7 316 52.2
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.7e-66 255.4 311 51.4
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.9e-61 240.4 312 48.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 6.1e-60 235.3 317 47.3
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.2e-59 232.3 307 47.2
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.2e-58 231.1 305 46.9
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.3e-57 227.6 314 46.2
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.7e-57 227.3 315 46.3
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.1e-56 224.6 316 44.6
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.1e-56 224.6 307 46.3
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 3.1e-56 223.0 307 46.3
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 3.1e-56 223.0 307 46.3
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 4.1e-56 222.6 310 46.1
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.0e-56 221.9 310 45.5
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.6e-55 220.7 311 44.4
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 1.6e-55 220.7 278 48.9
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.7e-54 217.2 311 45.0
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.8e-54 216.1 309 45.3
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 3.8e-54 216.1 311 43.4
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 6.5e-54 215.3 309 45.0
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.9e-53 213.8 295 45.4
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 3.2e-53 213.0 295 44.4
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 3.2e-53 213.0 311 42.8
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.1e-52 210.3 311 43.1
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.8e-51 207.2 296 46.3
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.3e-51 206.8 314 42.7
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 6.8e-51 205.3 292 45.5
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.2e-50 204.5 295 44.1
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.6e-50 203.4 292 44.5
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 2.8e-49 199.9 298 43.0
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 8.3e-49 198.4 294 43.9
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 2.4e-48 196.8 295 42.4
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 4.1e-48 196.1 307 43.0
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 7.0e-48 195.3 295 42.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.6e-47 194.1 298 41.6
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.6e-47 194.1 298 41.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.7e-47 193.4 318 39.3
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 3.5e-47 193.0 292 43.2
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 4.5e-47 192.6 298 40.6
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 5.9e-47 192.2 317 40.7
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.7e-46 190.7 295 40.0
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 2.9e-46 189.9 308 40.9
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 6.6e-46 188.7 334 39.5
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.5e-45 187.6 295 39.3
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.5e-45 187.6 292 42.1
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.9e-45 187.2 312 39.4
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 1.9e-45 187.2 312 38.1
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 2.5e-45 186.8 295 39.3
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.5e-45 186.8 305 40.3
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 2.5e-45 186.8 296 41.6
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 3.3e-45 186.4 318 39.9
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 4.3e-45 186.0 314 40.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 5.6e-45 185.7 302 39.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 1.6e-44 184.1 295 40.0
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.1e-44 183.7 312 39.4
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.8e-44 183.3 312 38.8
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 2.8e-44 183.3 295 39.3
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.6e-44 183.0 309 38.8
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 4.7e-44 182.6 314 39.5
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.0e-43 181.4 311 38.6
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.4e-43 181.0 295 39.0
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.8e-43 180.6 295 40.0
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.8e-43 180.6 309 39.5
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.3e-43 180.3 311 39.2
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 3.0e-43 179.9 295 39.0
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.0e-43 179.9 302 38.4
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 3.0e-43 179.9 270 42.6
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 4.0e-43 179.5 293 39.2
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 1.5e-42 177.6 307 38.8
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.4e-42 176.4 329 37.7
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 3.4e-42 176.4 295 38.6
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 3.4e-42 176.4 295 38.6
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 3.4e-42 176.4 302 38.1
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 3.4e-42 176.4 307 39.4
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 4.4e-42 176.0 308 39.9
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 9.8e-42 174.9 308 39.6
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.3e-41 174.5 281 42.0
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 6.4e-41 172.2 307 39.4
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 6.4e-41 172.2 253 42.7
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 8.3e-41 171.8 220 50.0
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 8.3e-41 171.8 295 38.6
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.4e-40 171.0 296 37.5
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.4e-40 171.0 168 54.8
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 7.0e-40 168.7 311 37.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.2e-39 167.9 391 34.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.6e-39 167.5 269 41.6
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.0e-39 167.2 305 38.4
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 7.8e-39 165.2 199 49.2
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.0e-38 164.9 200 53.5
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.1e-37 161.4 272 41.2
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-37 161.0 309 36.9
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.5e-37 161.0 218 45.4
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.5e-37 160.2 293 35.8
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 3.3e-37 159.8 253 41.5
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 4.3e-37 159.5 244 41.8
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.3e-37 159.5 308 35.7
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 4.3e-37 159.5 291 37.1
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 5.6e-37 159.1 315 37.5
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 7.3e-37 158.7 303 35.0
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.4e-35 154.5 309 36.6
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.0e-35 152.9 282 37.2
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.0e-35 152.9 262 40.5
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.5e-34 151.0 213 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 2.6e-34 150.2 307 32.9
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 2.2e-33 147.1 308 34.1
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 7.0e-32 142.1 299 36.8
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 4.6e-31 139.4 297 35.4
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.7e-30 137.5 191 44.5
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.0e-30 136.7 295 33.2
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.1e-29 134.8 187 45.5
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.8e-27 127.5 157 45.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.0e-27 126.3 198 42.4
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.0e-26 124.0 162 46.3
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.1e-24 118.2 84 69.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.4e-24 117.1 298 28.5
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 2.1e-23 114.0 219 39.3
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 7.3e-21 105.5 161 42.2
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 9.5e-21 105.1 162 42.6
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.2e-20 102.4 295 30.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 3.1e-19 100.1 221 36.2
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 4.0e-19 99.8 211 34.1
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 5.2e-19 99.4 115 47.8
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 2.6e-18 97.1 192 34.4
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 9.9e-18 95.1 111 49.5
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 4.9e-17 92.8 100 54.0
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.4e-16 91.3 55 78.2
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.4e-16 90.5 77 61.0
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.4e-16 89.4 195 35.4
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.6e-12 76.6 142 37.3
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.1e-11 73.6 82 46.3
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 4.2e-08 63.2 70 48.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.1e-07 60.8 61 55.7
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.7e-06 57.8 68 47.1
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 5.1e-06 56.2 189 23.8
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 6.6e-06 55.8 42 57.1


User provided reference genes

Program Settings