Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.0e-73 279.3 170 100.0
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 4.0e-29 132.1 92 77.2
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.2e-27 126.3 92 73.9
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 2.2e-27 126.3 146 61.0
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.9e-27 125.2 92 73.9
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 6.4e-27 124.8 92 72.8
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.1e-26 124.0 92 72.8
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.1e-26 124.0 92 72.8
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.4e-26 123.6 92 71.7
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 1.9e-26 123.2 92 71.7
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 2.4e-26 122.9 92 70.7
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.4e-26 122.9 92 71.7
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 3.2e-26 122.5 92 72.8
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 3.2e-26 122.5 92 71.7
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 5.4e-26 121.7 92 69.6
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 7.1e-26 121.3 92 69.6
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 7.1e-26 121.3 90 72.2
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 7.1e-26 121.3 92 70.7
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.2e-25 120.6 92 71.7
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 1.6e-25 120.2 92 70.7
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.6e-25 120.2 90 72.2
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.1e-25 119.8 92 69.6
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 2.1e-25 119.8 92 70.7
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 2.1e-25 119.8 92 71.7
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.7e-25 119.4 92 67.4
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 2.7e-25 119.4 92 67.4
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 3.5e-25 119.0 92 68.5
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 3.5e-25 119.0 92 69.6
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.5e-25 119.0 92 69.6
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.5e-25 119.0 92 69.6
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.5e-25 119.0 92 69.6
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 3.5e-25 119.0 92 68.5
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 4.6e-25 118.6 92 68.5
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 4.6e-25 118.6 90 71.1
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 4.6e-25 118.6 92 68.5
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 6.0e-25 118.2 92 64.1
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 6.0e-25 118.2 90 70.0
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 7.8e-25 117.9 92 68.5
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 7.8e-25 117.9 92 68.5
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 7.8e-25 117.9 92 68.5
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 7.8e-25 117.9 92 68.5
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 1.0e-24 117.5 92 68.5
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 1.0e-24 117.5 90 68.9
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.0e-24 117.5 92 66.3
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.3e-24 117.1 92 67.4
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 1.3e-24 117.1 90 68.9
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 1.3e-24 117.1 92 67.4
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.3e-24 117.1 92 67.4
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 1.3e-24 117.1 92 67.4
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 1.7e-24 116.7 92 68.5
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.7e-24 116.7 92 67.4
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.7e-24 116.7 76 82.9
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.7e-24 116.7 90 70.0
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 2.3e-24 116.3 92 68.5
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.3e-24 116.3 90 68.9
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 3.0e-24 115.9 92 67.4
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 3.0e-24 115.9 92 68.5
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 3.0e-24 115.9 92 69.6
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 3.0e-24 115.9 92 67.4
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 66.3
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 3.9e-24 115.5 92 67.4
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 5.1e-24 115.2 92 67.4
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 5.1e-24 115.2 92 63.0
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 6.6e-24 114.8 92 67.4
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 8.6e-24 114.4 92 68.5
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.1e-23 114.0 90 65.6
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 1.1e-23 114.0 90 66.7
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.1e-23 114.0 92 67.4
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.5e-23 113.6 92 65.2
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 1.5e-23 113.6 90 67.8
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 1.5e-23 113.6 90 67.8
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 1.5e-23 113.6 90 67.8
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 1.5e-23 113.6 90 67.8
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 1.5e-23 113.6 92 66.3
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-23 113.2 90 66.7
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 1.9e-23 113.2 90 66.7
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 1.9e-23 113.2 90 66.7
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 1.9e-23 113.2 90 66.7
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 1.9e-23 113.2 90 66.7
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.9e-23 113.2 90 66.7
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.5e-23 112.8 92 66.3
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 2.5e-23 112.8 90 65.6
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 2.5e-23 112.8 92 66.3
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 3.3e-23 112.5 90 65.6
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 3.3e-23 112.5 90 65.6
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 3.3e-23 112.5 92 64.1
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 3.3e-23 112.5 92 65.2
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 3.3e-23 112.5 90 66.7
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 3.3e-23 112.5 90 67.8
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 3.3e-23 112.5 90 66.7
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.3e-23 112.1 90 65.6
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 4.3e-23 112.1 92 66.3
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 5.6e-23 111.7 92 63.0
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 5.6e-23 111.7 90 65.6
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 7.3e-23 111.3 90 64.4
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 7.3e-23 111.3 90 64.4
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 7.3e-23 111.3 90 65.6
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 7.3e-23 111.3 90 64.4
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 7.3e-23 111.3 92 67.4
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 7.3e-23 111.3 90 65.6
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 9.6e-23 110.9 90 64.4
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 9.6e-23 110.9 92 65.2
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.2e-22 110.5 90 65.6
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 1.6e-22 110.2 90 65.6
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.6e-22 110.2 90 64.4
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.6e-22 110.2 90 65.6
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 2.1e-22 109.8 92 66.3
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 2.8e-22 109.4 90 64.4
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 3.6e-22 109.0 90 64.4
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 3.6e-22 109.0 90 65.6
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 1.4e-21 107.1 90 64.4
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 1.8e-21 106.7 86 67.4
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 3.1e-21 105.9 90 64.4
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 5.2e-21 105.1 92 64.1
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 5.2e-21 105.1 92 60.9
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 6.9e-21 104.8 90 61.1
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 8.9e-21 104.4 90 60.0
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 1.2e-20 104.0 90 61.1
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.2e-20 104.0 90 60.0
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.2e-20 104.0 90 60.0
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.0e-20 103.2 99 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.6e-20 102.8 90 58.9
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.4e-20 102.1 90 58.9
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.4e-20 102.1 92 59.8
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 2.9e-19 99.4 92 57.6
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 6.4e-19 98.2 90 57.8
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 7.1e-18 94.7 90 57.8
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 1.3e-16 90.5 93 53.8
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 1.7e-16 90.1 93 53.8
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 3.9e-16 89.0 93 52.7
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.8e-14 82.8 63 66.7
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 1.1e-13 80.9 65 64.6
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 3.1e-13 79.3 91 53.8
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.7e-11 73.6 81 49.4
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 1.1e-07 60.8 44 70.5


User provided reference genes

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