Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0110900 Rhododendron simsii HOM05D007321 ORTHO05D009244 2.0e-267 925.2 486 100.0
Actinidia28071 Actinidia chinensis HOM05D007321 ORTHO05D009244 9.5e-201 703.7 474 76.6
Dinv19324 Davidia involucrata HOM05D007321 ORTHO05D009244 2.4e-196 689.1 471 74.3
Lj5P243T60 Lonicera japonica HOM05D007321 ORTHO05D009244 2.7e-195 685.6 459 75.4
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 2.1e-184 649.4 434 76.3
Potri.001G344800 Populus trichocarpa HOM05D007321 ORTHO05D009244 4.0e-183 645.2 435 75.2
Eucgr.I02693 Eucalyptus grandis HOM05D007321 ORTHO05D009244 2.0e-182 642.9 427 75.4
Glyma.05G120300 Glycine max HOM05D007321 ORTHO05D009244 2.0e-182 642.9 482 69.7
Lsat_1_v5_gn_7_80180 Lactuca sativa HOM05D007321 ORTHO05D009244 2.0e-182 642.9 482 69.1
DCAR_021840 Daucus carota HOM05D000446 ORTHO05D000321 2.6e-182 642.5 483 70.4
HanXRQChr11g0337111 Helianthus annuus HOM05D007321 ORTHO05D009244 3.4e-182 642.1 458 71.2
ECA236G2671 Erigeron canadensis HOM05D007321 ORTHO05D009244 7.6e-182 641.0 464 69.6
Thecc.02G143600 Theobroma cacao HOM05D007321 ORTHO05D009244 1.3e-181 640.2 433 75.8
VMungo0251G3312 Vigna mungo HOM05D007321 ORTHO05D009244 1.3e-181 640.2 478 69.9
Manes.16G135300 Manihot esculenta HOM05D007321 ORTHO05D009244 1.7e-181 639.8 490 68.2
Duzib052G0820 Durio zibethinus HOM05D007321 ORTHO05D009244 2.2e-181 639.4 485 70.3
Cfa005577 Carpinus fangiana HOM05D007321 ORTHO05D009244 4.2e-180 635.2 469 69.1
CiPaw.05G039000 Carya illinoinensis HOM05D007321 ORTHO05D009244 4.2e-180 635.2 491 68.6
Phvul.002G206500 Phaseolus vulgaris HOM05D007321 ORTHO05D009244 5.4e-180 634.8 477 70.0
CSS0020188 Camellia sinensis var. sinensis HOM05D007321 ORTHO05D009244 7.1e-180 634.4 484 69.6
Sabra16G0223900 Salix brachista HOM05D007321 ORTHO05D009244 7.1e-180 634.4 435 73.8
GSVIVG01029706001 Vitis vinifera HOM05D007321 ORTHO05D009244 9.3e-180 634.0 426 73.7
Gorai.012G140200 Gossypium raimondii HOM05D007321 ORTHO05D009244 1.2e-179 633.6 485 68.9
Medtr4g094295 Medicago truncatula HOM05D007321 ORTHO05D009244 3.5e-179 632.1 481 68.0
Gohir.A04G112300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 4.6e-179 631.7 488 68.6
Gohir.D04G153300 Gossypium hirsutum HOM05D007321 ORTHO05D009244 4.6e-179 631.7 485 68.5
Nitab4.5_0007385g0020 Nicotiana tabacum HOM05D007321 ORTHO05D009244 1.8e-178 629.8 485 67.0
MD03G1054600 Malus domestica HOM05D007321 ORTHO05D009244 2.3e-178 629.4 459 70.8
ClCG10G015890 Citrullus lanatus HOM05D007321 ORTHO05D009244 1.1e-177 627.1 429 74.4
Lj4g0025169 Lotus japonicus HOM05D007321 ORTHO05D009244 1.5e-177 626.7 480 68.1
Atru.chr6.902 Acer truncatum HOM05D007321 ORTHO05D009244 3.3e-177 625.5 487 67.8
Psat1g188000 Pisum sativum HOM05D007321 ORTHO05D009244 4.3e-177 625.2 483 67.5
FAN25G3421 Fragaria x ananassa HOM05D007321 ORTHO05D009244 9.6e-177 624.0 426 72.8
Oeu037200.1 Olea europaea HOM05D007321 ORTHO05D009244 9.6e-177 624.0 487 67.6
RcHm_v2.0_Chr5g0072531 Rosa chinensis HOM05D007321 ORTHO05D009244 9.6e-177 624.0 479 67.6
FAN11G3563 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.1e-176 622.9 426 72.3
FAN16G2899 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.1e-176 622.9 426 72.3
FvH4_3g40270 Fragaria vesca HOM05D007321 ORTHO05D009244 2.8e-176 622.5 427 72.4
Nn1g05198 Nelumbo nucifera HOM05D007321 ORTHO05D009244 3.6e-176 622.1 447 71.4
MSTRG.16564 Avicennia marina HOM05D007321 ORTHO05D009244 1.4e-175 620.2 489 65.4
FAN21G2259 Fragaria x ananassa HOM05D007321 ORTHO05D009244 2.4e-175 619.4 426 72.1
Nitab4.5_0002105g0030 Nicotiana tabacum HOM05D007321 ORTHO05D009244 5.3e-175 618.2 485 66.0
BcaC05g29686 Brassica carinata HOM05D007321 ORTHO05D009244 6.9e-175 617.8 493 65.1
Sopen02g028190 Solanum pennellii HOM05D007321 ORTHO05D009244 6.9e-175 617.8 482 67.0
TWI59G1034 Tripterygium wilfordii HOM05D007321 ORTHO05D009244 9.0e-175 617.5 484 68.4
MELO3C009790.2 Cucumis melo HOM05D007321 ORTHO05D009244 1.5e-174 616.7 475 68.2
CsaV3_3G040590 Cucumis sativus L. HOM05D007321 ORTHO05D009244 2.0e-174 616.3 429 72.7
Solyc02g083410.4 Solanum lycopersicum HOM05D007321 ORTHO05D009244 2.0e-174 616.3 482 67.0
Cc02_g21870 Coffea canephora HOM05D007321 ORTHO05D009244 5.8e-174 614.8 491 65.8
Ciclev10004047m.g Citrus clementina HOM05D007321 ORTHO05D009244 1.7e-173 613.2 434 71.2
Migut.B00640 Erythranthe guttata HOM05D007321 ORTHO05D009244 4.9e-173 611.7 484 64.5
Lalb_Chr07g0189441 Lupinus albus HOM05D007321 ORTHO05D009244 4.9e-173 611.7 484 66.1
PGSC0003DMG400003660 Solanum tuberosum HOM05D007321 ORTHO05D009244 4.9e-173 611.7 427 71.2
CANSAT80G1420 Cannabis sativa HOM05D007321 ORTHO05D009244 6.4e-173 611.3 432 70.6
PGR142G0984 Punica granatum HOM05D007321 ORTHO05D009244 6.4e-173 611.3 486 66.0
Peaxi162Scf00328g00127 Petunia axillaris HOM05D007321 ORTHO05D009244 8.4e-173 610.9 478 65.7
QL11p019400 Quercus lobata HOM05D007321 ORTHO05D009244 1.4e-172 610.1 489 66.1
SGA_v2.0_scaffold332G48942 Striga asiatica HOM05D007321 ORTHO05D009244 1.6e-171 606.7 479 65.3
BraA05t22728Z Brassica rapa HOM05D007321 ORTHO05D009244 2.1e-171 606.3 489 64.4
Sed0000618 Sechium edule HOM05D007321 ORTHO05D009244 2.7e-171 605.9 427 71.9
EL10Ac8g19338 Beta vulgaris HOM05D007321 ORTHO05D009244 3.5e-171 605.5 430 70.7
Aqoxy6G00494 Aquilegia oxysepala HOM05D007321 ORTHO05D009244 4.6e-171 605.1 430 70.5
A05p39470 Brassica napus HOM05D007321 ORTHO05D009244 1.0e-170 604.0 489 64.6
AL3G20750 Arabidopsis lyrata HOM05D007321 ORTHO05D009244 1.9e-169 599.7 431 70.1
C05p58490 Brassica napus HOM05D007321 ORTHO05D009244 2.5e-169 599.4 489 63.6
Prupe.6G043200 Prunus persica HOM05D007321 ORTHO05D009244 2.5e-169 599.4 484 66.1
Ah.14g085390 Amaranthus hybridus HOM05D007321 ORTHO05D009244 3.3e-169 599.0 425 69.6
AT3G09580 Arabidopsis thaliana HOM05D007321 ORTHO05D009244 3.3e-169 599.0 432 69.7
BolC5t34500H Brassica oleracea HOM05D007321 ORTHO05D009244 4.3e-169 598.6 489 63.8
SalBow5G3411 Salvia bowleyana HOM05D007321 ORTHO05D009244 2.8e-168 595.9 483 67.3
CARHR083990 Cardamine hirsuta HOM05D007321 ORTHO05D009244 8.1e-168 594.3 488 63.3
Sp3g07930 Schrenkiella parvula HOM05D007321 ORTHO05D009244 1.1e-167 594.0 431 68.4
THA.LOC104826997 Tarenaya hassleriana HOM05D007321 ORTHO05D009244 4.0e-167 592.0 437 68.6
Sc14g0002750 Simmondsia chinensis HOM05D007321 ORTHO05D009244 1.0e-165 587.4 432 68.8
Carub.0003s0867 Capsella rubella HOM05D007321 ORTHO05D009244 1.7e-165 586.6 489 63.0
AUR62027387 Chenopodium quinoa HOM05D007321 ORTHO05D009244 2.1e-163 579.7 402 70.9
PSO541G5651 Papaver somniferum HOM05D007321 ORTHO05D009244 3.5e-163 578.9 424 68.2
MBI05_g36588_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.5e-161 573.5 425 68.0
Aa31LG3G2030 Aethionema arabicum HOM05D007321 ORTHO05D009244 2.5e-161 572.8 455 63.7
Thhalv10003042m.g Eutrema salsugineum HOM05D007321 ORTHO05D009244 3.3e-161 572.4 434 67.5
PSO675G7953 Papaver somniferum HOM05D007321 ORTHO05D009244 1.0e-157 560.8 475 61.9
SEGI_02418 Sequoiadendron giganteum HOM05D007321 ORTHO05D009244 9.3e-156 554.3 427 65.3
ATR0580G200 Amborella trichopoda HOM05D007321 ORTHO05D009244 6.5e-149 531.6 428 63.1
Mapoly0005s0009 Marchantia polymorpha HOM05D007321 ORTHO05D009244 1.4e-143 513.8 466 58.2
CDE06G0306 Ceratophyllum demersum HOM05D007321 ORTHO05D009244 2.6e-142 509.6 481 57.2
Pp3c2_19910 Physcomitrium patens HOM05D007321 ORTHO05D009244 2.1e-139 500.0 424 59.2
Ca_18334_v3 Cicer arietinum L. HOM05D005078 ORTHO05D007574 2.6e-137 493.0 404 63.9
TPR.G10452 Trifolium pratense HOM05D007321 ORTHO05D009244 2.4e-135 486.5 369 66.1
SMO116G0156 Selaginella moellendorffii HOM05D007321 ORTHO05D009244 3.8e-133 479.2 425 56.2
Zm00001eb328010 Zea mays HOM05D007321 ORTHO05D009244 6.1e-131 471.9 425 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1849 Anthoceros agrestis HOM05D007321 ORTHO05D009244 8.0e-123 444.9 428 52.3
Os07g0626800 Oryza sativa ssp. japonica HOM05D007321 ORTHO05D009244 4.0e-122 442.6 400 58.0
Cre12.g560900 Chlamydomonas reinhardtii HOM05D007321 ORTHO05D009244 9.1e-119 431.4 419 53.2
TAR381G1665 Trochodendron aralioides HOM05D007321 ORTHO05D009244 1.3e-112 411.0 339 67.3
CBR_g49724 Chara braunii HOM05D007321 ORTHO05D009244 1.1e-108 397.9 452 47.8
MCO04G135 Micromonas commoda HOM05D007321 ORTHO05D009244 1.2e-102 377.9 435 46.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 4.6e-102 375.9 417 47.5
Cpa.g.sc52.12 Carica papaya HOM05D007321 ORTHO05D009244 1.9e-100 370.5 265 69.8
CAN.G890.33 Capsicum annuum HOM05D007321 ORTHO05D009244 2.0e-94 350.5 477 44.2
MBI05_g44827_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 1.2e-81 308.1 339 52.8
AagrBONN_evm.TU.Sc2ySwM_344.1850 Anthoceros agrestis HOM05D007321 ORTHO05D009244 1.8e-66 257.7 220 56.4
unitig_8.g3471 Utricularia gibba HOM05D007321 ORTHO05D009244 8.4e-64 248.8 181 69.1
AUR62031301 Chenopodium quinoa HOM05D007321 ORTHO05D009244 4.3e-60 236.5 141 77.3
unitig_8.g3470 Utricularia gibba HOM05D007321 ORTHO05D009244 5.1e-53 213.0 148 64.9
MBI05_g44826_MAGBIO Magnolia biondii HOM05D007321 ORTHO05D009244 2.6e-41 174.1 117 69.2
TAR381G1585 Trochodendron aralioides HOM05D007321 ORTHO05D009244 1.3e-27 128.6 85 72.9
HPP92_016846 Vanilla planifolia HOM05D007321 ORTHO05D009244 5.9e-25 119.8 85 65.9
Ah.15g094770 Amaranthus hybridus HOM05D002360 ORTHO05D006971 6.5e-08 63.2 471 21.7
AUR62025597 Chenopodium quinoa HOM05D002360 ORTHO05D006971 8.5e-08 62.8 472 21.6
CiPaw.01G111500 Carya illinoinensis HOM05D002360 ORTHO05D006971 1.1e-07 62.4 481 21.2
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 1.5e-07 62.0 483 21.1
PSO135G0985 Papaver somniferum HOM05D002360 ORTHO05D006971 1.9e-07 61.6 471 21.9
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 1.9e-07 61.6 472 20.6
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 2.5e-07 61.2 481 21.6
Nn3g19797 Nelumbo nucifera HOM05D007321 ORTHO05D009244 2.5e-07 61.2 51 62.7
BraA10t44490Z Brassica rapa HOM05D007163 ORTHO05D009213 3.2e-07 60.8 175 28.0
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 4.2e-07 60.5 481 21.6
PSO135G0108 Papaver somniferum HOM05D002360 ORTHO05D006971 5.5e-07 60.1 471 21.4
Aqoxy7G00909 Aquilegia oxysepala HOM05D002360 ORTHO05D006971 7.2e-07 59.7 471 20.4
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 7.2e-07 59.7 475 20.2
Pp3c1_4180 Physcomitrium patens HOM05D007163 ORTHO05D009213 7.2e-07 59.7 164 28.0
Solyc03g123760.3 Solanum lycopersicum HOM05D002360 ORTHO05D006971 7.2e-07 59.7 484 19.8
EL10Ac7g18238 Beta vulgaris HOM05D002360 ORTHO05D006971 9.4e-07 59.3 483 21.7
Glyma.11G253000 Glycine max HOM05D002360 ORTHO05D006971 9.4e-07 59.3 484 20.7
BcaB08g36967 Brassica carinata HOM05D007163 ORTHO05D009213 1.2e-06 58.9 175 28.6
AUR62001382 Chenopodium quinoa HOM05D002360 ORTHO05D006971 1.2e-06 58.9 466 21.7
Ca_08364_v3 Cicer arietinum L. HOM05D007163 ORTHO05D009213 1.6e-06 58.5 175 30.3
PSO063G0972 Papaver somniferum HOM05D007163 ORTHO05D009213 1.6e-06 58.5 175 29.1
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 2.1e-06 58.2 547 20.1
Aa31LG11G15010 Aethionema arabicum HOM05D007163 ORTHO05D009213 2.7e-06 57.8 176 29.5
Cc04_g00540 Coffea canephora HOM05D002360 ORTHO05D006971 2.7e-06 57.8 479 19.8
Glyma.18G003900 Glycine max HOM05D002360 ORTHO05D006971 2.7e-06 57.8 481 19.8
Lj9A539T91 Lonicera japonica HOM05D002360 ORTHO05D006971 2.7e-06 57.8 471 20.4
Nn3g16518 Nelumbo nucifera HOM05D007163 ORTHO05D009213 2.7e-06 57.8 175 26.9
MSTRG.10902 Avicennia marina HOM05D002360 ORTHO05D006971 3.6e-06 57.4 474 19.8
Medtr7g031310 Medicago truncatula HOM05D007163 ORTHO05D009213 3.6e-06 57.4 175 29.7
CAN.G790.47 Capsicum annuum HOM05D002360 ORTHO05D006971 4.7e-06 57.0 484 19.4
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 4.7e-06 57.0 487 20.1
PGSC0003DMG400009156 Solanum tuberosum HOM05D002360 ORTHO05D006971 4.7e-06 57.0 484 19.8
AT5G14220 Arabidopsis thaliana HOM05D007163 ORTHO05D009213 6.1e-06 56.6 174 28.2
Sed0015727 Sechium edule HOM05D007163 ORTHO05D009213 6.1e-06 56.6 174 28.2
A10p24250 Brassica napus HOM05D007163 ORTHO05D009213 8.0e-06 56.2 172 27.9
CsaV3_6G001080 Cucumis sativus L. HOM05D007163 ORTHO05D009213 8.0e-06 56.2 66 43.9


User provided reference genes

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