Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0100100 Rhododendron simsii HOM05D034201 ORTHO05D021376 1.8e-105 386.0 203 100.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.2e-32 144.1 132 67.4
Rhsim02G0140100 Rhododendron simsii HOM05D034201 ORTHO05D021376 5.7e-22 108.6 87 77.0
Rhsim02G0142100 Rhododendron simsii HOM05D034201 ORTHO05D021376 5.7e-22 108.6 87 77.0
Rhsim05G0075700 Rhododendron simsii HOM05D001780 ORTHO05D004373 1.8e-20 103.6 89 66.3
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 2.9e-18 96.3 85 64.7
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 5.0e-18 95.5 89 62.9
Dinv33217 Davidia involucrata HOM05D001780 ORTHO05D004373 1.4e-17 94.0 82 62.2
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 1.9e-17 93.6 85 63.5
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 3.2e-17 92.8 74 64.9
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 4.2e-17 92.4 84 61.9
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 7.2e-17 91.7 88 60.2
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 2.1e-16 90.1 89 58.4
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 2.1e-16 90.1 82 58.5
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 2.1e-16 90.1 71 62.0
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 2.1e-16 90.1 76 60.5
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 2.7e-16 89.7 89 57.3
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 2.7e-16 89.7 71 62.0
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 2.7e-16 89.7 85 58.8
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 6.1e-16 88.6 71 64.8
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 6.1e-16 88.6 71 62.0
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 7.9e-16 88.2 85 56.5
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 7.9e-16 88.2 79 60.8
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 7.9e-16 88.2 74 62.2
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 7.9e-16 88.2 82 59.8
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 1.0e-15 87.8 85 56.5
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 1.0e-15 87.8 79 60.8
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 1.4e-15 87.4 71 63.4
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 1.4e-15 87.4 70 64.3
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 1.4e-15 87.4 74 59.5
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 1.8e-15 87.0 89 56.2
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 1.8e-15 87.0 89 56.2
Peaxi162Scf00558g00043 Petunia axillaris HOM05D001780 ORTHO05D004373 1.8e-15 87.0 85 57.6
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 1.8e-15 87.0 71 59.2
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 1.8e-15 87.0 89 57.3
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 1.8e-15 87.0 85 57.6
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 1.8e-15 87.0 85 57.6
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 3.0e-15 86.3 78 61.5
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 3.9e-15 85.9 85 57.6
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 3.9e-15 85.9 71 59.2
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 5.1e-15 85.5 84 57.1
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 6.7e-15 85.1 71 62.0
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 6.7e-15 85.1 71 62.0
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 6.7e-15 85.1 71 62.0
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 8.8e-15 84.7 82 52.4
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 1.1e-14 84.3 85 57.6
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 1.1e-14 84.3 69 62.3
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 1.1e-14 84.3 71 59.2
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 1.1e-14 84.3 71 59.2
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 1.1e-14 84.3 89 53.9
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.5e-14 84.0 96 47.9
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 1.5e-14 84.0 85 54.1
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 2.0e-14 83.6 85 56.5
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 2.0e-14 83.6 71 59.2
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 2.5e-14 83.2 71 57.7
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 2.5e-14 83.2 71 57.7
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 2.5e-14 83.2 70 61.4
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 2.5e-14 83.2 84 54.8
arahy.Tifrunner.gnm1.ann1.NNH8AZ Arachis hypogaea HOM05D001780 ORTHO05D004373 4.3e-14 82.4 81 58.0
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 5.7e-14 82.0 71 56.3
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 5.7e-14 82.0 85 54.1
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 5.7e-14 82.0 70 61.4
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 7.4e-14 81.6 70 57.1
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 7.4e-14 81.6 74 56.8
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 7.4e-14 81.6 70 58.6
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 1.3e-13 80.9 64 67.2
Nitab4.5_0001198g0100 Nicotiana tabacum HOM05D001780 ORTHO05D004373 1.3e-13 80.9 71 59.2
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 1.3e-13 80.9 71 57.7
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 1.3e-13 80.9 71 57.7
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 1.3e-13 80.9 76 53.9
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 1.3e-13 80.9 76 53.9
ATR0789G163 Amborella trichopoda HOM05D001780 ORTHO05D004373 1.7e-13 80.5 80 55.0
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 1.7e-13 80.5 74 58.1
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 1.7e-13 80.5 71 57.7
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 1.7e-13 80.5 79 55.7
RcHm_v2.0_Chr5g0060191 Rosa chinensis HOM05D001780 ORTHO05D004373 1.7e-13 80.5 85 51.8
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 2.2e-13 80.1 70 55.7
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 2.2e-13 80.1 70 55.7
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 2.2e-13 80.1 70 55.7
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 2.2e-13 80.1 71 56.3
Haze_00734 Corylus avellana HOM05D001780 ORTHO05D004373 3.7e-13 79.3 91 50.5
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 4.8e-13 79.0 85 54.1
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 4.8e-13 79.0 85 54.1
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 4.8e-13 79.0 85 54.1
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 8.2e-13 78.2 85 54.1
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 8.2e-13 78.2 71 57.7
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 1.1e-12 77.8 89 52.8
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 1.1e-12 77.8 71 56.3
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 1.8e-12 77.0 78 52.6
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 1.8e-12 77.0 89 52.8
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 1.8e-12 77.0 85 51.8
Mapoly0045s0031 Marchantia polymorpha HOM05D001780 ORTHO05D004373 1.8e-12 77.0 74 50.0
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 2.4e-12 76.6 78 52.6
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 3.1e-12 76.3 85 50.6
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 4.1e-12 75.9 88 51.1
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 4.1e-12 75.9 75 50.7
AagrBONN_evm.TU.Sc2ySwM_362.2885 Anthoceros agrestis HOM05D001780 ORTHO05D004373 5.3e-12 75.5 73 50.7
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 5.3e-12 75.5 85 49.4
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 6.9e-12 75.1 78 50.0
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 6.9e-12 75.1 85 49.4
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 6.9e-12 75.1 71 53.5
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 6.9e-12 75.1 71 54.9
SEGI_14552 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 6.9e-12 75.1 71 52.1
BcaNung00801 Brassica carinata HOM05D001780 ORTHO05D004373 9.1e-12 74.7 71 53.5
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 9.1e-12 74.7 75 49.3
Hma1.2p1_0597F.1_g186560 Hydrangea macrophylla HOM05D001780 ORTHO05D004373 9.1e-12 74.7 59 67.8
FAN17G1275 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.2e-11 74.3 62 58.1
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 1.5e-11 73.9 85 50.6
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 1.5e-11 73.9 85 50.6
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 1.5e-11 73.9 85 50.6
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 1.5e-11 73.9 71 52.1
C07p51730 Brassica napus HOM05D001780 ORTHO05D004373 1.5e-11 73.9 71 52.1
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 1.5e-11 73.9 85 50.6
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 1.5e-11 73.9 85 50.6
CARHR218340 Cardamine hirsuta HOM05D001780 ORTHO05D004373 1.5e-11 73.9 71 53.5
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 1.5e-11 73.9 85 50.6
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 2.0e-11 73.6 85 48.2
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 3.4e-11 72.8 85 48.2
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 3.4e-11 72.8 85 49.4
FAN17G1933 Fragaria x ananassa HOM05D001780 ORTHO05D004373 3.4e-11 72.8 64 53.1
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 4.5e-11 72.4 85 47.1
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 4.5e-11 72.4 79 50.6
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 5.9e-11 72.0 85 48.2
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 1.0e-10 71.2 71 50.7
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.7e-10 70.5 75 53.3
HPP92_012342 Vanilla planifolia HOM05D001780 ORTHO05D004373 2.2e-10 70.1 60 51.7
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 1.9e-09 67.0 80 51.2
ECA234G4143 Erigeron canadensis HOM05D001780 ORTHO05D004373 2.5e-09 66.6 64 53.1
Pp3c16_16950 Physcomitrium patens HOM05D001780 ORTHO05D004373 3.2e-09 66.2 74 44.6
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 3.2e-09 66.2 70 48.6
SMO200G0022 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 1.2e-08 64.3 72 47.2
Rhsim06G0150900 Rhododendron simsii HOM05D002068 ORTHO05D002029 3.6e-08 62.8 120 43.3
Carub.0003s2335 Capsella rubella HOM05D001780 ORTHO05D004373 4.7e-08 62.4 81 46.9
Aqoxy2G00702 Aquilegia oxysepala HOM05D001780 ORTHO05D021376 5.1e-07 58.9 41 65.9
Cre16.g651750 Chlamydomonas reinhardtii HOM05D001780 ORTHO05D004373 6.7e-07 58.5 61 44.3
CBR_g17670 Chara braunii HOM05D001780 ORTHO05D004373 8.8e-07 58.2 73 41.1
Rhsim06G0151000 Rhododendron simsii HOM05D001802 ORTHO05D021376 1.1e-06 57.8 38 81.6
ECA247G3932 Erigeron canadensis HOM05D001780 ORTHO05D004373 2.6e-06 56.6 48 56.2


User provided reference genes

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