Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 7.0e-66 253.8 130 100.0
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 6.4e-43 177.6 122 74.6
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 4.4e-36 154.8 125 65.6
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.2e-34 148.7 125 63.2
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 4.6e-33 144.8 124 62.1
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 3.1e-29 132.1 125 58.4
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 5.2e-29 131.3 108 65.7
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 1.5e-28 129.8 125 52.8
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 1.4e-26 123.2 120 55.0
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 7.8e-25 117.5 119 47.1
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.3e-24 115.9 125 55.2
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 5.1e-24 114.8 126 52.4
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 5.1e-24 114.8 126 52.4
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 5.1e-24 114.8 124 53.2
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 6.6e-24 114.4 126 52.4
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 9.5e-23 110.5 127 51.2
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 1.6e-22 109.8 124 50.0
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 8.1e-22 107.5 124 48.4
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.8e-21 106.3 126 51.6
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 1.8e-21 106.3 126 54.8
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 2.4e-21 105.9 121 50.4
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 3.1e-21 105.5 125 52.8
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 4.0e-21 105.1 122 52.5
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 8.9e-21 104.0 122 51.6
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.2e-20 103.6 120 52.5
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.2e-20 103.6 124 50.8
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 2.6e-20 102.4 123 47.2
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 2.6e-20 102.4 125 49.6
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 3.4e-20 102.1 126 52.4
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 9.9e-20 100.5 126 47.6
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 9.9e-20 100.5 123 48.0
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 9.9e-20 100.5 124 47.6
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 2.2e-19 99.4 121 46.3
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 2.2e-19 99.4 123 48.0
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.9e-19 99.0 129 45.7
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 5.4e-18 94.7 125 43.2
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 7.1e-18 94.4 123 48.0
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.6e-17 93.2 128 44.5
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.1e-17 92.8 124 46.0
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 2.7e-17 92.4 84 64.3
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 3.5e-17 92.0 131 43.5
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 4.6e-17 91.7 127 42.5
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 4.6e-17 91.7 126 46.0
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 1.0e-16 90.5 122 42.6
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.0e-16 90.5 140 40.7
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 1.3e-16 90.1 127 46.5
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 1.3e-16 90.1 122 46.7
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 1.7e-16 89.7 126 43.7
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 1.7e-16 89.7 129 44.2
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 2.3e-16 89.4 126 43.7
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 2.3e-16 89.4 126 43.7
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 2.3e-16 89.4 125 40.8
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 3.0e-16 89.0 126 46.0
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 3.9e-16 88.6 127 44.1
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 3.9e-16 88.6 127 45.7
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 5.1e-16 88.2 127 44.1
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 5.1e-16 88.2 127 44.1
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 5.1e-16 88.2 118 44.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 5.1e-16 88.2 127 43.3
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 8.7e-16 87.4 132 43.2
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 1.1e-15 87.0 124 46.0
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 1.5e-15 86.7 127 43.3
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 1.9e-15 86.3 130 41.5
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 1.9e-15 86.3 131 42.7
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.9e-15 86.3 127 45.7
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 2.5e-15 85.9 65 70.8
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 3.3e-15 85.5 127 42.5
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 4.3e-15 85.1 127 43.3
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 7.3e-15 84.3 65 69.2
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 7.3e-15 84.3 132 39.4
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 7.3e-15 84.3 110 48.2
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 9.6e-15 84.0 77 54.5
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 1.3e-14 83.6 124 43.5
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 1.6e-14 83.2 129 44.2
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 3.6e-14 82.0 125 44.8
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 4.8e-14 81.6 113 45.1
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 4.8e-14 81.6 128 44.5
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 8.1e-14 80.9 76 61.8
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 8.1e-14 80.9 125 44.8
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.4e-13 80.1 127 45.7
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 1.8e-13 79.7 114 47.4
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-13 79.7 129 41.1
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 1.8e-13 79.7 129 41.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.4e-13 79.3 105 44.8
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 3.1e-13 79.0 73 57.5
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 3.1e-13 79.0 73 57.5
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.1e-13 79.0 127 44.1
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 4.0e-13 78.6 127 43.3
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 5.3e-13 78.2 64 65.6
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.3e-13 78.2 73 58.9
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 5.3e-13 78.2 78 55.1
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 5.3e-13 78.2 130 39.2
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 9.0e-13 77.4 132 38.6
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.2e-12 77.0 127 44.1
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.5e-12 76.6 73 56.2
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.5e-12 76.6 73 56.2
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 4.9e-11 71.6 95 45.3
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 1.1e-10 70.5 57 57.9
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 1.1e-10 70.5 126 39.7
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 1.2e-09 67.0 56 55.4
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 2.7e-09 65.9 57 54.4
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 6.0e-09 64.7 51 54.9
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 6.0e-09 64.7 51 54.9
Lsat_1_v5_gn_1_105560 Lactuca sativa HOM05D003178 ORTHO05D003636 7.8e-09 64.3 59 54.2
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 3.9e-08 62.0 68 47.1
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 5.1e-08 61.6 142 32.4
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.9e-07 59.7 44 63.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 3.6e-06 55.5 56 51.8
Rhsim08G0136300 Rhododendron simsii HOM05D007381 ORTHO05D006450 4.8e-06 55.1 70 52.9


User provided reference genes

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