Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 3.2e-110 401.7 201 100.0
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 7.6e-104 380.6 201 94.0
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.4e-102 376.3 201 93.0
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 1.5e-88 329.7 193 82.4
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.4e-83 310.8 184 82.1
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 1.6e-64 250.0 195 62.6
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.0e-64 249.6 193 65.3
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.0e-64 249.6 189 64.0
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 2.7e-64 249.2 195 62.1
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.0e-63 247.3 189 63.5
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 2.9e-63 245.7 189 63.5
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 5.0e-63 245.0 191 61.3
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 2.5e-62 242.7 185 62.7
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.3e-62 242.3 196 60.7
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 5.5e-62 241.5 190 60.0
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 2.8e-61 239.2 190 58.9
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 3.6e-61 238.8 189 59.8
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 3.6e-61 238.8 191 58.1
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.7e-61 238.4 191 60.7
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 5.2e-60 235.0 187 60.4
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 6.8e-60 234.6 190 61.1
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.2e-59 233.8 187 58.3
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.0e-59 233.0 187 58.8
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 5.7e-59 231.5 188 57.4
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 9.8e-59 230.7 191 57.1
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 1.7e-58 229.9 193 56.5
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 1.7e-58 229.9 187 58.8
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 1.7e-58 229.9 191 57.6
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 2.2e-58 229.6 191 57.1
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 4.9e-58 228.4 189 56.1
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 6.3e-58 228.0 193 56.0
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 6.3e-58 228.0 187 58.3
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.3e-58 228.0 190 56.8
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 8.3e-58 227.6 198 56.1
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.1e-57 227.3 186 59.7
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 1.1e-57 227.3 187 57.8
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.4e-57 226.9 190 58.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.8e-57 226.5 189 57.1
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.8e-57 226.5 187 58.8
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.4e-57 226.1 188 56.9
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 3.1e-57 225.7 191 56.0
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.1e-57 225.3 187 56.7
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 4.1e-57 225.3 196 57.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 5.4e-57 224.9 191 57.1
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 5.4e-57 224.9 187 57.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 9.2e-57 224.2 189 56.1
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 1.6e-56 223.4 191 53.9
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 1.6e-56 223.4 196 56.1
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.7e-56 222.6 191 53.9
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 3.5e-56 222.2 187 55.1
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.5e-56 221.9 187 55.1
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 5.9e-56 221.5 190 55.8
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 1.0e-55 220.7 187 54.5
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.3e-55 220.3 188 56.4
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 1.3e-55 220.3 186 58.1
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 1.7e-55 219.9 185 57.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 1.7e-55 219.9 185 55.7
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 2.9e-55 219.2 190 53.7
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 2.9e-55 219.2 188 56.9
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 3.8e-55 218.8 184 54.9
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 3.8e-55 218.8 184 57.1
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.8e-55 218.8 185 57.8
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 3.8e-55 218.8 187 54.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 6.6e-55 218.0 192 53.1
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 8.6e-55 217.6 186 55.9
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 8.6e-55 217.6 188 55.3
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.1e-54 217.2 191 55.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 1.5e-54 216.9 187 55.1
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.9e-54 216.5 188 55.3
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.9e-54 216.5 188 53.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 2.5e-54 216.1 189 55.6
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 4.3e-54 215.3 188 54.8
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.3e-54 215.3 192 53.1
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 7.3e-54 214.5 188 55.9
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 9.5e-54 214.2 192 54.2
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 9.5e-54 214.2 187 56.1
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.2e-53 213.8 192 52.6
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 1.6e-53 213.4 183 56.8
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.8e-53 212.6 161 72.0
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 3.6e-53 212.2 186 57.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 3.6e-53 212.2 192 52.1
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 4.7e-53 211.8 190 54.7
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 1.4e-52 210.3 187 52.9
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 5.2e-52 208.4 183 54.6
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 5.2e-52 208.4 187 52.9
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 5.2e-52 208.4 187 53.5
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 6.8e-52 208.0 189 53.4
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.5e-51 206.8 190 53.7
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.0e-51 206.5 192 51.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.4e-51 205.7 187 52.4
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 4.4e-51 205.3 193 51.3
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.8e-51 204.9 198 52.0
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 7.5e-51 204.5 193 50.8
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 9.8e-51 204.1 175 54.9
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.7e-50 203.4 193 50.3
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 4.9e-50 201.8 185 53.5
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 6.4e-50 201.4 184 57.6
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.1e-49 200.7 194 49.5
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 1.1e-49 200.7 192 50.5
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 1.4e-49 200.3 233 45.9
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 2.4e-49 199.5 189 50.8
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 3.2e-49 199.1 192 49.0
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 193 50.8
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 4.1e-49 198.7 191 50.8
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.0e-49 198.0 186 51.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 1.2e-48 197.2 194 50.0
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 1.6e-48 196.8 187 51.3
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 2.0e-48 196.4 189 51.3
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 2.0e-48 196.4 189 49.7
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 2.7e-48 196.1 193 50.8
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 3.5e-48 195.7 195 50.8
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 4.6e-48 195.3 169 57.4
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 6.0e-48 194.9 189 49.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 6.0e-48 194.9 194 50.0
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 7.8e-48 194.5 168 54.8
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.0e-47 194.1 190 48.9
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 1.3e-47 193.7 192 49.0
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 1.7e-47 193.4 189 47.1
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.7e-47 193.4 195 49.7
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 5.0e-47 191.8 192 47.9
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.6e-47 191.4 192 47.9
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.1e-46 190.7 143 57.3
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 1.9e-46 189.9 192 50.0
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 3.3e-46 189.1 172 53.5
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 5.6e-46 188.3 193 48.7
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 7.3e-46 188.0 186 48.9
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 1.6e-45 186.8 186 48.4
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-45 186.0 181 50.8
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 4.7e-45 185.3 192 46.4
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 8.0e-45 184.5 173 52.6
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 1.1e-44 184.1 186 48.9
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 1.8e-44 183.3 186 48.4
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.8e-44 183.3 197 54.8
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 6.8e-44 181.4 193 49.2
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 4.4e-43 178.7 192 46.9
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.9e-42 176.0 160 55.6
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 4.9e-42 175.3 190 48.4
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 4.9e-42 175.3 140 58.6
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 6.4e-42 174.9 186 47.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.4e-41 173.7 163 52.1
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 3.2e-41 172.6 190 47.9
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 5.4e-41 171.8 163 51.5
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.2e-40 170.6 193 45.6
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.0e-39 167.5 187 48.1
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.3e-39 166.4 192 45.8
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 5.1e-39 165.2 192 44.8
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 1.5e-38 163.7 186 44.1
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 3.3e-38 162.5 137 54.7
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.3e-38 162.5 159 50.9
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 2.1e-37 159.8 192 42.2
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.4e-36 157.1 193 43.0
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 1.8e-36 156.8 188 43.1
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 2.3e-36 156.4 196 43.4
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 3.1e-36 156.0 193 43.0
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 1.2e-35 154.1 164 48.2
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.3e-34 150.6 131 52.7
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.3e-34 150.6 193 44.0
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.3e-34 150.6 186 40.9
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 7.1e-33 144.8 150 48.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 4.6e-32 142.1 192 41.1
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 6.0e-32 141.7 143 46.2
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.9e-30 136.7 126 50.8
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-28 129.8 129 46.5
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 6.6e-23 111.7 109 52.3
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.7e-23 111.3 195 35.9
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 2.5e-22 109.8 191 40.8
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 5.8e-19 98.6 107 47.7
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.3e-15 87.4 187 32.1
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 2.5e-14 83.2 81 49.4
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.3e-13 80.9 162 32.7
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 2.1e-13 80.1 227 27.8
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.4e-12 76.6 101 43.6
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 1.5e-11 73.9 223 28.3
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 1.5e-11 73.9 74 50.0
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.4e-09 67.4 169 29.0
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 3.2e-09 66.2 163 30.1
Solyc04g040020.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 3.3e-06 56.2 43 58.1


User provided reference genes

Program Settings