Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 0.0e+00 1647.1 976 100.0
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 2.8e-268 929.1 993 61.5
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 2.8e-199 699.9 990 51.7
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.5e-99 368.6 730 42.5
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 5.0e-92 343.6 1019 36.1
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 7.8e-77 293.1 873 35.7
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 1.4e-73 282.3 421 46.1
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 3.1e-73 281.2 424 45.8
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 5.1e-68 263.8 402 46.5
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 5.6e-67 260.4 822 33.7
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 9.6e-67 259.6 1006 31.7
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 3.1e-65 254.6 854 33.0
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 1.7e-60 238.8 855 32.3
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 4.3e-59 234.2 1088 29.9
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 9.6e-59 233.0 753 35.3
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 9.6e-59 233.0 793 35.4
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.8e-57 228.8 689 34.3
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 4.4e-56 224.2 828 32.7
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 6.4e-55 220.3 1143 28.9
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 7.1e-54 216.9 781 33.7
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 2.1e-53 215.3 930 30.6
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.6e-50 205.7 1121 28.7
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 1.2e-48 199.5 1035 29.3
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 2.0e-48 198.7 1025 29.0
CSS0027095 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 9.9e-48 196.4 365 45.8
CSS0016721 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 2.9e-47 194.9 368 46.2
CSS0038644 Camellia sinensis var. sinensis HOM05D037884 ORTHO05D005895 2.9e-47 194.9 368 46.2
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 2.9e-47 194.9 869 30.7
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 3.2e-46 191.4 1046 30.6
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 1.2e-45 189.5 891 28.7
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 6.0e-45 187.2 918 30.9
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 1.0e-44 186.4 822 30.4
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 1.8e-44 185.7 839 30.3
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 5.1e-44 184.1 892 30.3
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 6.7e-44 183.7 841 29.7
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 1.1e-43 183.0 605 33.9
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 4.3e-43 181.0 912 29.6
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 6.2e-42 177.2 830 31.6
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 1.2e-40 172.9 815 28.6
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 2.0e-40 172.2 814 30.0
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 2.0e-40 172.2 842 31.9
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 2.6e-40 171.8 850 28.9
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 2.2e-39 168.7 653 32.8
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 2.1e-37 162.2 568 31.7
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 4.6e-37 161.0 625 33.6
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 6.0e-37 160.6 846 28.3
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 1.1e-35 156.4 431 35.0
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 5.7e-35 154.1 694 28.8
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 1.5e-32 146.0 840 28.0
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 4.5e-32 144.4 896 28.0
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 2.9e-31 141.7 561 30.7
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 5.0e-31 141.0 659 29.4
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 6.5e-31 140.6 947 28.0
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 1.1e-30 139.8 933 28.4
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 1.9e-30 139.0 832 29.0
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 2.5e-30 138.7 577 30.5
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 3.2e-30 138.3 625 31.4
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.2e-29 136.3 521 34.5
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 2.1e-29 135.6 800 29.4
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.7e-29 135.2 845 27.9
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.0e-28 131.7 780 26.4
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.0e-28 131.7 883 27.9
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 8.7e-28 130.2 840 27.3
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 9.7e-27 126.7 415 34.5
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 2.2e-26 125.6 382 36.9
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 8.2e-26 123.6 528 33.3
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 4.1e-25 121.3 504 34.3
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 1.5e-24 119.4 645 27.4
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 2.6e-24 118.6 122 54.1
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 2.6e-24 118.6 112 55.4
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 3.4e-24 118.2 89 79.8
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 7.7e-24 117.1 506 32.0
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 2.9e-23 115.2 118 66.9
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 3.8e-23 114.8 537 30.7
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 3.8e-23 114.8 569 31.3
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 6.5e-23 114.0 334 32.6
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 6.5e-23 114.0 837 25.2
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 1.1e-22 113.2 120 60.8
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 1.9e-22 112.5 568 28.7
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 5.5e-22 110.9 396 30.1
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 9.4e-22 110.2 126 53.2
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 9.4e-22 110.2 515 26.6
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 9.4e-22 110.2 407 30.0
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 2.7e-21 108.6 112 63.4
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 3.6e-21 108.2 273 38.5
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 1.4e-20 106.3 677 27.8
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 6.7e-20 104.0 110 63.6
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 1.1e-19 103.2 112 44.6
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 2.0e-19 102.4 116 56.0
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 2.5e-19 102.1 138 49.3
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 2.5e-19 102.1 603 28.9
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 4.3e-19 101.3 330 33.3
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 9.7e-19 100.1 119 52.1
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 1.3e-18 99.8 325 32.9
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 1.3e-18 99.8 325 32.9
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 1.3e-18 99.8 325 32.9
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 1.7e-18 99.4 318 34.6
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.2e-18 99.0 320 31.2
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 2.8e-18 98.6 134 64.2
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 4.8e-18 97.8 165 55.8
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 4.8e-18 97.8 382 34.8
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 8.2e-18 97.1 316 32.0
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 8.2e-18 97.1 83 73.5
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 1.4e-17 96.3 301 36.9
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 1.4e-17 96.3 112 63.4
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 1.8e-17 95.9 152 50.7
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 3.1e-17 95.1 81 74.1
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 4.1e-17 94.7 154 48.1
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.7e-15 89.4 62 64.5
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 2.2e-15 89.0 56 71.4
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 5.0e-15 87.8 111 53.2
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 6.5e-15 87.4 89 64.0
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.1e-14 86.7 77 54.5
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 7.2e-14 84.0 172 47.1
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 9.4e-14 83.6 379 35.9
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 1.2e-13 83.2 117 52.1
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 6.3e-10 70.9 114 50.0
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 3.1e-09 68.6 195 32.3
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 5.3e-09 67.8 110 51.8
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 7.0e-09 67.4 58 50.0
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.2e-08 66.6 126 33.3
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 2.0e-08 65.9 122 46.7
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 1.0e-07 63.5 791 22.3
Dinv42333 Davidia involucrata HOM05D006920 ORTHO05D005895 2.9e-07 62.0 71 52.1
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 5.0e-07 61.2 50 58.0
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 5.0e-07 61.2 50 58.0
AUR62033943 Chenopodium quinoa HOM05D036879 ORTHO05D005895 2.5e-06 58.9 54 48.1
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 5.5e-06 57.8 53 49.1


User provided reference genes

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