Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0014000 Rhododendron simsii HOM05D006355 ORTHO05D008284 1.0e-174 616.7 331 100.0
vmacro17166 Vaccinium macrocarpon HOM05D006355 ORTHO05D008284 1.1e-123 447.2 332 72.3
Lj4A288G20 Lonicera japonica HOM05D006355 ORTHO05D008284 1.8e-110 403.3 335 65.7
TAR413G0001 Trochodendron aralioides HOM05D006355 ORTHO05D008284 1.0e-108 397.5 329 64.1
Cpa.g.sc28.115 Carica papaya HOM05D006355 ORTHO05D008284 2.9e-108 396.0 332 64.5
Hma1.2p1_0672F.1_g200900 Hydrangea macrophylla HOM05D006355 ORTHO05D008284 8.4e-108 394.4 328 63.7
Haze_25952 Corylus avellana HOM05D006355 ORTHO05D008284 6.0e-106 388.3 332 62.0
QL02p061794 Quercus lobata HOM05D006355 ORTHO05D008284 3.9e-105 385.6 333 61.9
QL02p061767 Quercus lobata HOM05D006355 ORTHO05D008284 1.5e-104 383.6 333 61.6
Thecc.09G082800 Theobroma cacao HOM05D006355 ORTHO05D008284 1.5e-104 383.6 332 62.0
CiPaw.03G211000 Carya illinoinensis HOM05D006355 ORTHO05D008284 2.1e-103 379.8 335 60.3
GSVIVG01015151001 Vitis vinifera HOM05D006355 ORTHO05D008284 2.1e-103 379.8 331 62.5
Manes.16G098900 Manihot esculenta HOM05D006355 ORTHO05D008284 6.3e-103 378.3 332 62.3
Oeu010827.1 Olea europaea HOM05D006355 ORTHO05D008284 3.1e-102 375.9 332 60.5
Atru.chr7.1648 Acer truncatum HOM05D006355 ORTHO05D008284 1.5e-101 373.6 332 60.8
Gohir.D07G013200 Gossypium hirsutum HOM05D006355 ORTHO05D008284 1.5e-101 373.6 335 59.4
Cfa003044 Carpinus fangiana HOM05D006355 ORTHO05D008284 5.9e-101 371.7 332 59.6
Gorai.001G013900 Gossypium raimondii HOM05D006355 ORTHO05D008284 5.9e-101 371.7 335 59.1
Peaxi162Scf00494g00027 Petunia axillaris HOM05D006355 ORTHO05D008284 6.5e-100 368.2 331 60.4
Gohir.A07G013400 Gossypium hirsutum HOM05D006355 ORTHO05D008284 5.5e-99 365.2 332 58.4
CAN.G35.5 Capsicum annuum HOM05D006355 ORTHO05D008284 7.2e-99 364.8 330 60.6
Nitab4.5_0002079g0060 Nicotiana tabacum HOM05D006355 ORTHO05D008284 1.2e-98 364.0 330 60.6
Migut.L01533 Erythranthe guttata HOM05D006355 ORTHO05D008284 2.1e-98 363.2 332 59.0
Solyc07g041020.3 Solanum lycopersicum HOM05D006355 ORTHO05D008284 7.9e-98 361.3 330 60.6
Cc06_g11800 Coffea canephora HOM05D006355 ORTHO05D008284 3.0e-97 359.4 331 58.0
Eucgr.C00847 Eucalyptus grandis HOM05D006355 ORTHO05D008284 5.1e-97 358.6 332 57.5
Ciclev10008972m.g Citrus clementina HOM05D006355 ORTHO05D008284 1.1e-96 357.5 330 58.8
Nn8g38760 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.3e-96 355.5 332 59.9
Nn8g41302 Nelumbo nucifera HOM05D006355 ORTHO05D008284 4.3e-96 355.5 332 59.9
SalBow1G0189 Salvia bowleyana HOM05D006355 ORTHO05D008284 9.7e-96 354.4 332 59.6
PGSC0003DMG400014101 Solanum tuberosum HOM05D006355 ORTHO05D008284 2.2e-95 353.2 330 60.3
ClCG11G001610 Citrullus lanatus HOM05D006355 ORTHO05D008284 3.7e-95 352.4 333 60.1
CANSAT56G3969 Cannabis sativa HOM05D006355 ORTHO05D008284 8.2e-95 351.3 333 56.8
CANSAT56G1278 Cannabis sativa HOM05D006355 ORTHO05D008284 2.4e-94 349.7 333 56.8
Prupe.7G204300 Prunus persica HOM05D006355 ORTHO05D008284 2.4e-94 349.7 332 57.8
Sopen07g020150 Solanum pennellii HOM05D006355 ORTHO05D008284 4.1e-94 349.0 330 58.8
CsaV3_2G001300 Cucumis sativus L. HOM05D006355 ORTHO05D008284 1.2e-93 347.4 332 58.7
MELO3C004639.2 Cucumis melo HOM05D006355 ORTHO05D008284 2.6e-93 346.3 332 59.0
Lj4g0004716 Lotus japonicus HOM05D006355 ORTHO05D008284 2.6e-93 346.3 332 56.3
RcHm_v2.0_Chr2g0094111 Rosa chinensis HOM05D006355 ORTHO05D008284 2.6e-93 346.3 332 57.2
TWI34G0237 Tripterygium wilfordii HOM05D006355 ORTHO05D008284 2.6e-93 346.3 333 58.9
Potri.006G146200 Populus trichocarpa HOM05D006355 ORTHO05D008284 4.5e-93 345.5 332 58.7
Aqoxy7G01135 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 5.9e-93 345.1 334 58.4
Nitab4.5_0002842g0040 Nicotiana tabacum HOM05D006355 ORTHO05D008284 5.9e-93 345.1 339 58.1
Sed0027351 Sechium edule HOM05D006355 ORTHO05D008284 1.3e-92 344.0 333 58.3
Ca_21303_v3 Cicer arietinum L. HOM05D006355 ORTHO05D008284 2.2e-92 343.2 331 55.0
DCAR_024718 Daucus carota HOM05D006355 ORTHO05D008284 1.4e-91 340.5 335 56.4
Phvul.003G133900 Phaseolus vulgaris HOM05D006355 ORTHO05D008284 2.5e-91 339.7 332 56.0
Duzib168G2189 Durio zibethinus HOM05D006355 ORTHO05D008284 5.5e-91 338.6 333 57.7
Glyma.13G107200 Glycine max HOM05D006355 ORTHO05D008284 5.5e-91 338.6 331 54.7
SGA_v2.0_scaffold21G09447 Striga asiatica HOM05D006355 ORTHO05D008284 5.5e-91 338.6 332 56.3
Glyma.17G052200 Glycine max HOM05D006355 ORTHO05D008284 1.8e-89 333.6 332 54.8
FAN28G1606 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.1e-88 330.9 331 56.5
ECA234G3558 Erigeron canadensis HOM05D006355 ORTHO05D008284 2.0e-88 330.1 331 55.9
arahy.Tifrunner.gnm1.ann1.I94R61 Arachis hypogaea HOM05D006355 ORTHO05D008284 2.5e-88 329.7 332 56.0
HanXRQChr12g0354551 Helianthus annuus HOM05D006355 ORTHO05D008284 2.5e-88 329.7 331 56.2
FvH4_1g08060 Fragaria vesca HOM05D006355 ORTHO05D008284 3.3e-88 329.3 331 56.8
FAN19G0491 Fragaria x ananassa HOM05D006355 ORTHO05D008284 3.3e-88 329.3 331 56.8
FAN23G1962 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.3e-87 327.4 331 56.8
TPR.G9437 Trifolium pratense HOM05D006355 ORTHO05D008284 2.2e-87 326.6 333 55.6
PGR142G1993 Punica granatum HOM05D006355 ORTHO05D008284 2.4e-86 323.2 332 54.5
Psat4g016280 Pisum sativum HOM05D006355 ORTHO05D008284 5.3e-86 322.0 334 55.1
Sabra06G0115400 Salix brachista HOM05D006355 ORTHO05D008284 5.3e-86 322.0 372 51.1
FAN26G1509 Fragaria x ananassa HOM05D006355 ORTHO05D008284 6.9e-86 321.6 343 54.8
FAN26G2768 Fragaria x ananassa HOM05D006355 ORTHO05D008284 1.5e-85 320.5 343 54.5
Hund08706 Selenicereus undatus HOM05D006355 ORTHO05D008284 1.7e-84 317.0 335 55.5
Thhalv10022802m.g Eutrema salsugineum HOM05D006355 ORTHO05D008284 5.0e-84 315.5 331 54.1
Medtr4g125720 Medicago truncatula HOM05D006355 ORTHO05D008284 1.1e-83 314.3 337 52.8
Lalb_Chr12g0199961 Lupinus albus HOM05D006355 ORTHO05D008284 5.5e-83 312.0 328 53.4
COL.COLO4_18155 Corchorus olitorius HOM05D006355 ORTHO05D008284 3.6e-82 309.3 332 53.3
Lsat_1_v5_gn_5_143521 Lactuca sativa HOM05D006355 ORTHO05D008284 1.4e-81 307.4 325 54.5
Carub.0003s3364 Capsella rubella HOM05D006355 ORTHO05D008284 2.0e-80 303.5 331 53.5
MBI11_g07532_MAGBIO Magnolia biondii HOM05D006355 ORTHO05D008284 5.7e-80 302.0 333 52.6
MD02G1085300 Malus domestica HOM05D006355 ORTHO05D008284 9.7e-80 301.2 333 51.4
Sp3g32760 Schrenkiella parvula HOM05D006355 ORTHO05D008284 6.3e-79 298.5 332 53.9
CARHR109830 Cardamine hirsuta HOM05D006355 ORTHO05D008284 8.2e-79 298.1 331 51.7
MD15G1212400 Malus domestica HOM05D006355 ORTHO05D008284 1.1e-78 297.7 335 52.5
Actinidia25231 Actinidia chinensis HOM05D006355 ORTHO05D008284 1.4e-78 297.4 170 84.1
ATR0051G027 Amborella trichopoda HOM05D006355 ORTHO05D008284 7.0e-78 295.0 331 52.0
BcaB03g16724 Brassica carinata HOM05D006355 ORTHO05D008284 4.5e-77 292.4 331 51.1
AUR62025162 Chenopodium quinoa HOM05D006355 ORTHO05D008284 1.0e-76 291.2 326 56.4
Sc08g0008680 Simmondsia chinensis HOM05D006355 ORTHO05D008284 2.2e-76 290.0 339 51.3
AT2G19385 Arabidopsis thaliana HOM05D006355 ORTHO05D008284 3.8e-76 289.3 331 52.0
AUR62029015 Chenopodium quinoa HOM05D006355 ORTHO05D008284 6.5e-76 288.5 341 51.9
VMungo1215G0260 Vigna mungo HOM05D006355 ORTHO05D008284 4.2e-75 285.8 306 53.6
Aa31LG8G16390 Aethionema arabicum HOM05D006355 ORTHO05D008284 3.6e-74 282.7 329 51.7
CDE06G0893 Ceratophyllum demersum HOM05D006355 ORTHO05D008284 1.0e-73 281.2 334 48.5
Dinv36798 Davidia involucrata HOM05D006355 ORTHO05D008284 1.4e-73 280.8 273 55.3
C07p02840 Brassica napus HOM05D006355 ORTHO05D008284 1.8e-73 280.4 330 51.8
BolC7t40681H Brassica oleracea HOM05D006355 ORTHO05D008284 1.8e-73 280.4 330 51.8
A07p01380 Brassica napus HOM05D006355 ORTHO05D008284 3.0e-73 279.6 332 51.5
BraA07t27933Z Brassica rapa HOM05D006355 ORTHO05D008284 5.2e-73 278.9 331 50.5
AL3G48940 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 1.5e-72 277.3 331 51.1
BcaC06g36568 Brassica carinata HOM05D006355 ORTHO05D008284 1.5e-72 277.3 332 51.5
Gohir.A05G032100 Gossypium hirsutum HOM05D006355 ORTHO05D008284 8.2e-71 271.6 330 51.2
arahy.Tifrunner.gnm1.ann1.2VE13Z Arachis hypogaea HOM05D006355 ORTHO05D008284 1.8e-70 270.4 332 50.3
Os01g0583200 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D008284 7.0e-70 268.5 331 47.1
PSO063G0296 Papaver somniferum HOM05D006355 ORTHO05D008284 8.8e-65 251.5 337 45.7
PSO832G0549 Papaver somniferum HOM05D006355 ORTHO05D008284 1.2e-64 251.1 339 46.6
Zm00001eb357030 Zea mays HOM05D006355 ORTHO05D008284 7.5e-64 248.4 330 47.0
EL10Ac8g19156 Beta vulgaris HOM05D006355 ORTHO05D008284 1.3e-63 247.7 407 41.3
HPP92_009733 Vanilla planifolia HOM05D006355 ORTHO05D008284 3.7e-55 219.5 331 41.4
SEGI_15381 Sequoiadendron giganteum HOM05D006355 ORTHO05D008284 7.0e-54 215.3 331 42.9
CSS0037261 Camellia sinensis var. sinensis HOM05D006355 ORTHO05D008284 8.6e-52 208.4 269 53.5
Pp3c3_280 Physcomitrium patens HOM05D006355 ORTHO05D008284 1.1e-43 181.4 331 37.5
Mapoly0108s0017 Marchantia polymorpha HOM05D006355 ORTHO05D008284 2.1e-42 177.2 273 42.9
AagrBONN_evm.TU.Sc2ySwM_228.3887 Anthoceros agrestis HOM05D006355 ORTHO05D008284 4.7e-42 176.0 126 64.3
CBR_g39727 Chara braunii HOM05D006355 ORTHO05D008284 1.8e-41 174.1 137 62.8
SMO200G0211 Selaginella moellendorffii HOM05D006355 ORTHO05D008284 1.8e-41 174.1 338 36.1
unitig_8.g3528 Utricularia gibba HOM05D001583 ORTHO05D001900 1.5e-40 171.0 323 38.7
Carub.0003s3362 Capsella rubella HOM05D006355 ORTHO05D008284 3.7e-39 166.4 333 36.6
AT2G19380 Arabidopsis thaliana HOM05D006355 ORTHO05D011679 2.8e-34 150.2 199 42.7
AL3G48950 Arabidopsis lyrata HOM05D006355 ORTHO05D008284 3.1e-33 146.7 226 41.2
SGA_v2.0_scaffold23G10049 Striga asiatica HOM05D006355 ORTHO05D008284 7.5e-32 142.1 365 31.2
Cre17.g701050 Chlamydomonas reinhardtii HOM05D006355 ORTHO05D008284 4.3e-27 126.3 136 45.6
PRCOL_00003845 Prasinoderma coloniale HOM05D006355 ORTHO05D008284 1.2e-26 124.8 128 46.1
MCO07G733 Micromonas commoda HOM05D006355 ORTHO05D008284 4.9e-23 112.8 137 43.1
SHI30664 Sapria himalayana HOM05D006355 ORTHO05D008284 8.4e-23 112.1 158 42.4
Migut.B00896 Erythranthe guttata HOM05D002142 ORTHO05D001189 3.2e-22 110.2 105 56.2
SHI23456 Sapria himalayana HOM05D006355 ORTHO05D008284 1.0e-20 105.1 57 75.4
SHI30666 Sapria himalayana HOM05D006355 ORTHO05D008284 3.0e-20 103.6 57 73.7
Aqoxy7G02122 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 2.5e-19 100.5 246 34.6
Actinidia25232 Actinidia chinensis HOM05D006355 ORTHO05D008284 3.3e-19 100.1 121 52.1
Aqoxy4G01928 Aquilegia oxysepala HOM05D006355 ORTHO05D008284 1.2e-18 98.2 246 34.6
GSVIVG01008148001 Vitis vinifera HOM05D006355 ORTHO05D000948 1.5e-08 64.7 90 41.1
Os01g0583300 Oryza sativa ssp. japonica HOM05D006355 ORTHO05D300111 3.4e-08 63.5 41 73.2


User provided reference genes

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