Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0000600 Rhododendron simsii HOM05D000528 ORTHO05D023351 1.2e-29 132.5 69 100.0
vmacro06377 Vaccinium macrocarpon HOM05D000528 ORTHO05D000999 6.2e-21 103.6 67 77.6
Actinidia39603 Actinidia chinensis HOM05D000528 ORTHO05D000999 8.4e-18 93.2 68 67.6
CSS0027335 Camellia sinensis var. sinensis HOM05D000528 ORTHO05D000999 1.0e-15 86.3 64 67.2
Lj1A1154G40 Lonicera japonica HOM05D000528 ORTHO05D000999 1.7e-15 85.5 64 67.2
TAR626G1794 Trochodendron aralioides HOM05D000528 ORTHO05D000999 9.6e-14 79.7 59 66.1
GSVIVG01014993001 Vitis vinifera HOM05D000528 ORTHO05D000999 2.1e-13 78.6 58 67.2
CANSAT56G4237 Cannabis sativa HOM05D000528 ORTHO05D000999 4.8e-13 77.4 64 65.6
DCAR_023798 Daucus carota HOM05D000528 ORTHO05D000999 6.2e-13 77.0 62 61.3
Cfa021584 Carpinus fangiana HOM05D000528 ORTHO05D000999 8.1e-13 76.6 60 66.7
Oeu007685.1 Olea europaea HOM05D000528 ORTHO05D000999 2.4e-12 75.1 57 63.2
Haze_21237 Corylus avellana HOM05D000528 ORTHO05D000999 3.1e-12 74.7 60 66.7
Solyc12g017830.3 Solanum lycopersicum HOM05D000528 ORTHO05D000999 3.1e-12 74.7 62 61.3
Ah.01g016930 Amaranthus hybridus HOM05D000528 ORTHO05D000999 5.3e-12 73.9 56 67.9
HanXRQChr16g0521011 Helianthus annuus HOM05D000528 ORTHO05D000999 5.3e-12 73.9 64 59.4
Atru.chr7.1804 Acer truncatum HOM05D000528 ORTHO05D000999 6.9e-12 73.6 56 71.4
PGR142G1496 Punica granatum HOM05D000528 ORTHO05D000999 6.9e-12 73.6 60 66.7
TWI63G0826 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 9.0e-12 73.2 52 69.2
Prupe.7G189500 Prunus persica HOM05D000528 ORTHO05D000999 1.2e-11 72.8 61 67.2
Lsat_1_v5_gn_4_40140 Lactuca sativa HOM05D000528 ORTHO05D000999 1.5e-11 72.4 57 61.4
MBI13_g05971_MAGBIO Magnolia biondii HOM05D000528 ORTHO05D000999 1.5e-11 72.4 65 58.5
MD15G1225500 Malus domestica HOM05D000528 ORTHO05D000999 1.5e-11 72.4 61 67.2
Peaxi162Scf00006g03411 Petunia axillaris HOM05D000528 ORTHO05D000999 1.5e-11 72.4 60 58.3
Nitab4.5_0006028g0020 Nicotiana tabacum HOM05D000528 ORTHO05D000999 2.0e-11 72.0 62 61.3
TWI34G0978 Tripterygium wilfordii HOM05D000528 ORTHO05D000999 3.4e-11 71.2 55 65.5
Manes.03G054900 Manihot esculenta HOM05D000528 ORTHO05D000999 4.5e-11 70.9 55 67.3
Actinidia33511 Actinidia chinensis HOM05D000528 ORTHO05D023351 5.8e-11 70.5 64 56.2
Thecc.09G067600 Theobroma cacao HOM05D000528 ORTHO05D000999 5.8e-11 70.5 55 65.5
Gohir.A07G018300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 7.6e-11 70.1 53 66.0
Sabra06G0167300 Salix brachista HOM05D000528 ORTHO05D000999 7.6e-11 70.1 55 67.3
CiPaw.08G000100 Carya illinoinensis HOM05D000528 ORTHO05D000999 9.9e-11 69.7 60 63.3
Gohir.D07G018100 Gossypium hirsutum HOM05D000528 ORTHO05D000999 1.3e-10 69.3 50 70.0
Gorai.001G018700 Gossypium raimondii HOM05D000528 ORTHO05D000999 1.3e-10 69.3 50 70.0
Lsat_1_v5_gn_1_84121 Lactuca sativa HOM05D000528 ORTHO05D000999 1.3e-10 69.3 57 61.4
Sc03g0004600 Simmondsia chinensis HOM05D000528 ORTHO05D000999 1.3e-10 69.3 56 62.5
MSTRG.27425 Avicennia marina HOM05D000528 ORTHO05D000999 1.7e-10 68.9 62 59.7
Nn6g31501 Nelumbo nucifera HOM05D000528 ORTHO05D000999 2.2e-10 68.6 51 68.6
Sopen12g008630 Solanum pennellii HOM05D000528 ORTHO05D000999 2.2e-10 68.6 53 64.2
AUR62023914 Chenopodium quinoa HOM05D000528 ORTHO05D000999 2.9e-10 68.2 54 66.7
Duzib150G1295 Durio zibethinus HOM05D000528 ORTHO05D000999 3.8e-10 67.8 55 63.6
ECA234G2762 Erigeron canadensis HOM05D000528 ORTHO05D000999 3.8e-10 67.8 54 63.0
Potri.006G216900 Populus trichocarpa HOM05D000528 ORTHO05D000999 3.8e-10 67.8 55 65.5
COL.COLO4_21179 Corchorus olitorius HOM05D000528 ORTHO05D000999 4.9e-10 67.4 55 65.5
AUR62038332 Chenopodium quinoa HOM05D000528 ORTHO05D000999 6.4e-10 67.0 51 68.6
Migut.F01825 Erythranthe guttata HOM05D000528 ORTHO05D000999 6.4e-10 67.0 63 60.3
Migut.F02072 Erythranthe guttata HOM05D000528 ORTHO05D000999 6.4e-10 67.0 62 58.1
SalBow3G2418 Salvia bowleyana HOM05D000528 ORTHO05D000999 6.4e-10 67.0 54 61.1
MSTRG.8180 Avicennia marina HOM05D000528 ORTHO05D000999 8.4e-10 66.6 64 60.9
FAN26G3208 Fragaria x ananassa HOM05D000528 ORTHO05D000999 8.4e-10 66.6 45 75.6
SalBow1G1474 Salvia bowleyana HOM05D000528 ORTHO05D000999 8.4e-10 66.6 62 59.7
SGA_v2.0_scaffold122G33228 Striga asiatica HOM05D000528 ORTHO05D000999 8.4e-10 66.6 57 59.6
Gorai.009G039300 Gossypium raimondii HOM05D000528 ORTHO05D000999 1.1e-09 66.2 47 72.3
Eucgr.C00756 Eucalyptus grandis HOM05D000528 ORTHO05D000999 1.4e-09 65.9 65 53.8
Cc09_g04400 Coffea canephora HOM05D000528 ORTHO05D000999 1.9e-09 65.5 54 61.1
HanXRQChr01g0017721 Helianthus annuus HOM05D000528 ORTHO05D000999 1.9e-09 65.5 52 61.5
Gohir.D05G038800 Gossypium hirsutum HOM05D000528 ORTHO05D000999 2.4e-09 65.1 47 70.2
RcHm_v2.0_Chr2g0096511 Rosa chinensis HOM05D000528 ORTHO05D000999 2.4e-09 65.1 45 73.3
Aqoxy6G02695 Aquilegia oxysepala HOM05D000528 ORTHO05D000999 3.2e-09 64.7 56 64.3
Gohir.A05G037300 Gossypium hirsutum HOM05D000528 ORTHO05D000999 3.2e-09 64.7 49 69.4
Manes.16G088500 Manihot esculenta HOM05D000528 ORTHO05D000999 3.2e-09 64.7 55 63.6
Phvul.003G126000 Phaseolus vulgaris HOM05D000528 ORTHO05D000999 3.2e-09 64.7 59 62.7
FvH4_1g09670 Fragaria vesca HOM05D000528 ORTHO05D000999 4.2e-09 64.3 45 73.3
Lalb_Chr07g0181491 Lupinus albus HOM05D000528 ORTHO05D000999 4.2e-09 64.3 61 62.3
Lalb_Chr12g0200411 Lupinus albus HOM05D000528 ORTHO05D000999 4.2e-09 64.3 69 55.1
Ca_21350_v3 Cicer arietinum L. HOM05D000528 ORTHO05D000999 9.3e-09 63.2 54 64.8
Medtr4g124430 Medicago truncatula HOM05D000528 ORTHO05D000999 9.3e-09 63.2 56 62.5
Lj4g0008783 Lotus japonicus HOM05D000528 ORTHO05D000999 1.2e-08 62.8 54 64.8
VMungo1215G1674 Vigna mungo HOM05D000528 ORTHO05D000999 1.2e-08 62.8 59 62.7
TPR.G12643 Trifolium pratense HOM05D000528 ORTHO05D000999 1.6e-08 62.4 56 60.7
ClCG05G002580 Citrullus lanatus HOM05D000528 ORTHO05D000999 2.7e-08 61.6 58 63.8
PSO017G2681 Papaver somniferum HOM05D000528 ORTHO05D000999 2.7e-08 61.6 61 57.4
Hund00753 Selenicereus undatus HOM05D000528 ORTHO05D000999 2.7e-08 61.6 41 73.2
Glyma.17G044000 Glycine max HOM05D000528 ORTHO05D000999 4.6e-08 60.8 60 61.7
Psat4g020000 Pisum sativum HOM05D000528 ORTHO05D000999 4.6e-08 60.8 57 57.9
MELO3C006224.2 Cucumis melo HOM05D000528 ORTHO05D000999 7.9e-08 60.1 58 63.8
CsaV3_3G010020 Cucumis sativus L. HOM05D000528 ORTHO05D000999 7.9e-08 60.1 58 63.8
Sed0012879 Sechium edule HOM05D000528 ORTHO05D000999 7.9e-08 60.1 47 72.3
Glyma.13G115800 Glycine max HOM05D000528 ORTHO05D000999 1.0e-07 59.7 60 61.7
PSO170G1988 Papaver somniferum HOM05D000528 ORTHO05D000999 1.3e-07 59.3 61 55.7
arahy.Tifrunner.gnm1.ann1.Z2MV1Y Arachis hypogaea HOM05D000528 ORTHO05D000999 5.1e-07 57.4 57 57.9
SGA_v2.0_scaffold13G06349 Striga asiatica HOM05D000528 ORTHO05D000999 1.1e-06 56.2 37 75.7
arahy.Tifrunner.gnm1.ann1.JF9XSQ Arachis hypogaea HOM05D000528 ORTHO05D000999 1.9e-06 55.5 57 56.1
Sed0018294 Sechium edule HOM05D000528 ORTHO05D000999 1.9e-06 55.5 41 73.2
A06p26630 Brassica napus HOM05D000528 ORTHO05D000999 2.5e-06 55.1 46 63.0
C03p67850 Brassica napus HOM05D000528 ORTHO05D000999 2.5e-06 55.1 46 63.0
BolSC21t60253H Brassica oleracea HOM05D000528 ORTHO05D000999 2.5e-06 55.1 46 63.0
BraA06t25597Z Brassica rapa HOM05D000528 ORTHO05D000999 2.5e-06 55.1 46 63.0
THA.LOC104810976 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 3.3e-06 54.7 41 65.9
THA.LOC104799601 Tarenaya hassleriana HOM05D000528 ORTHO05D000999 4.3e-06 54.3 46 60.9
unitig_699.g19737 Utricularia gibba HOM05D000528 ORTHO05D023351 4.3e-06 54.3 38 68.4
Aa31LG4G12930 Aethionema arabicum HOM05D000528 ORTHO05D000999 7.4e-06 53.5 45 62.2
Sp5g17840 Schrenkiella parvula HOM05D000528 ORTHO05D000999 7.4e-06 53.5 46 60.9
Carub.0005s0916 Capsella rubella HOM05D000528 ORTHO05D000999 9.6e-06 53.1 46 60.9
CARHR153370 Cardamine hirsuta HOM05D000528 ORTHO05D000999 9.6e-06 53.1 46 60.9
unitig_736.g22501 Utricularia gibba HOM05D000528 ORTHO05D000999 9.6e-06 53.1 42 66.7


User provided reference genes

Program Settings