Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.3e-215 751.9 372 100.0
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.9e-193 679.1 374 89.3
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 4.4e-190 667.9 372 87.6
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 4.4e-190 667.9 372 87.9
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 7.6e-190 667.2 374 89.0
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 7.6e-190 667.2 370 90.8
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 2.2e-189 665.6 376 87.5
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 4.9e-189 664.5 372 87.4
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.4e-189 664.1 372 88.2
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 6.4e-189 664.1 372 87.4
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 1.4e-188 662.9 373 85.8
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.4e-188 662.9 372 87.4
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.9e-188 662.5 372 87.6
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.9e-188 662.5 384 85.4
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 4.2e-188 661.4 375 85.9
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 7.1e-188 660.6 372 86.6
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 9.3e-188 660.2 372 87.6
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 9.3e-188 660.2 375 85.9
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 2.1e-187 659.1 375 85.6
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 2.7e-187 658.7 372 87.6
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 1.0e-186 656.8 372 87.1
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.7e-186 656.0 353 91.2
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 2.3e-186 655.6 375 85.6
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.3e-186 655.6 375 86.4
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 3.9e-186 654.8 372 85.5
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 6.6e-186 654.1 369 86.4
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 8.7e-186 653.7 372 86.6
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.1e-185 653.3 372 86.3
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.9e-185 652.5 372 86.6
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.9e-185 652.5 372 86.6
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 4.3e-185 651.4 373 87.1
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 4.3e-185 651.4 372 85.2
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 4.3e-185 651.4 372 85.2
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 5.6e-185 651.0 372 86.3
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.3e-184 649.8 372 86.6
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 1.6e-184 649.4 372 86.6
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.8e-184 648.7 373 85.8
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 6.2e-184 647.5 372 85.2
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.1e-183 646.7 373 85.0
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 1.8e-183 646.0 372 83.6
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 1.8e-183 646.0 372 86.0
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 3.1e-183 645.2 379 85.0
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 4.0e-183 644.8 373 84.7
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 4.0e-183 644.8 372 84.7
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 4.0e-183 644.8 375 85.3
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 4.0e-183 644.8 372 85.2
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 4.0e-183 644.8 372 86.0
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 5.3e-183 644.4 373 85.0
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 6.9e-183 644.0 372 84.9
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 6.9e-183 644.0 372 85.5
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 6.9e-183 644.0 372 85.8
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 9.0e-183 643.7 372 85.2
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.0e-183 643.7 373 84.7
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 1.5e-182 642.9 373 85.0
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 2.6e-182 642.1 372 85.5
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 9.9e-182 640.2 388 83.0
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.7e-181 639.4 373 84.7
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 2.2e-181 639.0 399 80.2
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.4e-181 637.5 372 84.4
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 6.4e-181 637.5 372 84.4
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 6.4e-181 637.5 372 84.4
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.4e-181 637.5 373 84.5
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.4e-181 637.5 373 84.5
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 8.4e-181 637.1 372 85.2
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 1.1e-180 636.7 373 83.4
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.9e-180 636.0 372 84.1
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 7.1e-180 634.0 373 83.6
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.2e-179 633.3 373 83.4
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 1.6e-179 632.9 373 82.8
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 2.1e-179 632.5 368 85.9
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 2.7e-179 632.1 371 81.9
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 3.5e-179 631.7 411 77.6
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 1.3e-178 629.8 372 85.8
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.3e-178 629.8 373 83.1
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 2.3e-178 629.0 363 85.7
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 2.3e-178 629.0 372 83.1
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 3.9e-178 628.2 372 83.9
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 5.1e-178 627.9 372 83.1
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 8.7e-178 627.1 371 84.1
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 1.5e-177 626.3 373 83.6
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 1.9e-177 625.9 373 83.6
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.9e-177 625.9 371 83.0
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 5.6e-177 624.4 373 83.4
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 7.4e-177 624.0 372 80.4
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.6e-176 622.9 372 82.3
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 1.1e-175 620.2 366 83.6
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 1.4e-175 619.8 373 82.3
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.8e-175 619.4 366 82.5
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 3.1e-175 618.6 372 80.9
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 4.0e-175 618.2 373 81.8
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 5.3e-175 617.8 433 73.7
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 9.0e-175 617.1 372 80.4
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 1.5e-174 616.3 361 84.2
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.0e-174 615.9 372 81.5
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 3.4e-174 615.1 364 81.9
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 5.8e-174 614.4 368 83.2
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 9.9e-174 613.6 366 82.2
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 1.3e-173 613.2 373 81.5
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 1.3e-173 613.2 366 83.1
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 2.2e-173 612.5 372 80.9
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 2.2e-173 612.5 372 81.2
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 4.9e-173 611.3 364 81.3
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 4.9e-173 611.3 364 81.3
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 4.9e-173 611.3 364 81.3
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 4.9e-173 611.3 364 81.3
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 4.9e-173 611.3 364 81.3
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 8.4e-173 610.5 372 80.9
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 1.1e-172 610.1 371 81.1
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 2.4e-172 609.0 372 79.3
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 4.2e-172 608.2 373 80.7
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 5.5e-172 607.8 404 77.0
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 5.5e-172 607.8 366 81.1
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.1e-171 605.9 352 85.2
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 4.6e-171 604.7 358 82.4
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 3.3e-169 598.6 360 83.1
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 3.3e-169 598.6 374 81.3
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.6e-168 596.3 370 76.8
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 2.8e-168 595.5 371 79.8
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 1.1e-167 593.6 370 76.8
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 2.0e-166 589.3 373 78.3
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 4.5e-166 588.2 373 78.3
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 2.2e-165 585.9 353 81.6
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 3.8e-165 585.1 373 77.7
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 3.2e-164 582.0 372 78.2
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.2e-163 580.1 364 79.9
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 2.1e-163 579.3 353 81.3
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.5e-163 578.6 373 76.7
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 8.7e-162 573.9 373 78.3
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 7.4e-161 570.9 356 78.9
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 7.4e-161 570.9 362 79.8
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 1.6e-160 569.7 367 76.8
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 2.8e-160 568.9 353 79.3
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 3.1e-159 565.5 366 76.0
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 5.3e-159 564.7 366 77.3
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 2.0e-158 562.8 368 75.0
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 3.3e-153 545.4 364 74.7
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 9.4e-148 527.3 373 67.3
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.4e-146 523.5 372 67.5
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 5.1e-146 521.5 399 70.7
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 6.7e-146 521.2 372 66.9
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 1.1e-145 520.4 363 70.0
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 5.7e-145 518.1 290 86.9
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.8e-144 515.8 373 67.3
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.0e-142 509.6 372 65.9
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 3.4e-142 508.8 327 77.1
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 2.5e-140 502.7 282 86.9
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 4.2e-140 501.9 285 85.6
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 7.2e-140 501.1 373 65.7
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 1.4e-138 496.9 361 66.5
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 2.3e-138 496.1 374 68.7
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 2.3e-138 496.1 360 68.6
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 7.4e-137 491.1 369 71.0
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 2.8e-136 489.2 279 86.7
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.1e-132 477.2 369 63.7
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-132 477.2 329 72.9
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 8.8e-130 467.6 280 82.9
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 5.7e-129 464.9 279 81.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 2.8e-128 462.6 279 81.7
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 4.1e-127 458.8 241 92.5
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.7e-120 436.8 388 56.2
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 6.5e-117 424.9 277 77.6
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 1.9e-116 423.3 273 75.8
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 4.7e-115 418.7 368 55.2
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.6e-113 412.9 273 73.3
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 3.7e-112 409.1 404 52.2
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 4.1e-111 405.6 372 54.3
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 8.9e-98 361.3 273 69.2
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 1.6e-94 350.5 198 84.8
AUR62029978 Chenopodium quinoa HOM05D003727 ORTHO05D004731 1.2e-91 340.9 224 75.0
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.3e-90 336.7 198 84.3
MD16G1136800 Malus domestica HOM05D003727 ORTHO05D004731 8.6e-85 318.2 179 86.0
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 1.3e-69 267.7 171 79.5
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.0e-61 241.5 268 54.9
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.7e-46 190.3 369 31.7
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.5e-44 184.5 120 73.3
Glyma.14G127500 Glycine max HOM05D003727 ORTHO05D004731 3.3e-44 183.3 115 82.6
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 9.7e-44 181.8 148 64.9
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 3.7e-43 179.9 120 71.7
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.1e-42 176.8 442 28.1
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 4.2e-39 166.4 405 26.7
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.1e-36 158.3 115 67.0
Cfa027032 Carpinus fangiana HOM05D003727 ORTHO05D122316 1.7e-32 144.4 316 30.1
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 2.8e-27 127.1 84 73.8
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 5.3e-10 69.7 198 32.3
VMungo0251G3273 Vigna mungo HOM05D003727 ORTHO05D000132 7.0e-10 69.3 48 77.1


User provided reference genes

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