Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.8e-283 978.0 511 100.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.1e-85 321.6 324 59.6
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 1.1e-74 285.0 278 59.7
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.6e-63 247.3 269 55.8
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.0e-59 233.0 265 53.2
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.5e-55 221.5 278 50.4
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 3.4e-55 220.3 268 50.4
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.1e-53 215.3 267 49.8
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 1.1e-53 215.3 264 51.1
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 5.4e-53 213.0 251 52.6
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 3.5e-52 210.3 266 50.0
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 4.5e-52 209.9 266 48.9
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 1.0e-51 208.8 266 50.0
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 1.0e-51 208.8 266 50.0
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 1.3e-51 208.4 269 47.6
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 5.0e-51 206.5 264 48.5
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 6.6e-51 206.1 277 47.3
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 3.3e-50 203.8 254 50.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 1.2e-49 201.8 264 48.9
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.2e-49 201.8 264 47.7
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.6e-49 200.3 274 47.8
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 6.1e-49 199.5 265 47.9
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 1.8e-48 198.0 264 46.6
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 3.0e-48 197.2 257 47.9
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 4.0e-48 196.8 257 47.9
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.2e-48 196.4 264 48.1
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.5e-47 194.9 264 47.0
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 3.7e-46 190.3 265 46.8
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 3.2e-45 187.2 264 45.1
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 7.0e-45 186.0 268 47.0
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.6e-44 184.9 270 45.6
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 2.7e-44 184.1 220 51.8
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.7e-43 181.4 270 44.8
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 3.9e-43 180.3 268 44.0
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 3.9e-43 180.3 258 46.5
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 4.3e-42 176.8 192 55.7
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 5.6e-42 176.4 250 45.6
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 5.6e-42 176.4 262 45.8
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 7.3e-42 176.0 254 46.1
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 9.5e-42 175.6 271 44.6
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.1e-41 174.5 275 42.2
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.1e-41 174.5 248 44.4
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.7e-41 173.3 248 44.8
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 1.1e-40 172.2 266 44.7
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.8e-40 171.4 273 43.2
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.8e-40 171.4 252 44.4
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 1.8e-40 171.4 268 42.9
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.3e-40 171.0 265 43.0
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.1e-40 170.6 265 42.3
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 4.0e-40 170.2 270 44.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 5.2e-40 169.9 259 41.7
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 6.8e-40 169.5 252 42.9
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 8.9e-40 169.1 252 42.9
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 8.9e-40 169.1 273 42.5
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.2e-39 168.7 265 42.3
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.0e-39 167.9 265 41.1
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 2.0e-39 167.9 208 50.0
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.0e-39 167.9 274 42.3
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.6e-39 167.5 254 44.1
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 2.6e-39 167.5 208 51.0
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 3.4e-39 167.2 272 42.3
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 3.4e-39 167.2 273 42.1
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 4.4e-39 166.8 273 41.0
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 5.8e-39 166.4 263 44.1
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 9.8e-39 165.6 265 42.6
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 9.8e-39 165.6 269 41.3
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 1.3e-38 165.2 265 41.9
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-38 165.2 268 43.7
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 2.2e-38 164.5 312 39.1
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.2e-38 164.5 273 41.4
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 2.9e-38 164.1 265 41.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 2.9e-38 164.1 265 41.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 4.9e-38 163.3 265 42.6
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 6.4e-38 162.9 255 43.1
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.4e-38 162.9 259 43.2
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 8.3e-38 162.5 244 43.9
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 1.1e-37 162.2 205 47.3
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.4e-37 161.8 259 42.9
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.9e-37 161.4 269 40.9
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-37 161.4 263 43.7
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.9e-37 161.4 260 40.4
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 5.4e-37 159.8 259 40.2
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 5.4e-37 159.8 255 42.0
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 7.0e-37 159.5 262 39.7
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 9.2e-37 159.1 261 41.0
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.2e-36 158.7 282 39.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.1e-36 157.9 266 42.9
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 3.5e-36 157.1 259 39.8
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.5e-36 157.1 230 44.8
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 1.3e-35 155.2 259 41.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 3.0e-35 154.1 264 41.3
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 1.1e-34 152.1 207 47.3
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 9.5e-34 149.1 208 46.2
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.6e-33 148.3 234 42.7
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.1e-33 147.9 241 42.3
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 3.6e-33 147.1 257 40.9
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 1.1e-32 145.6 130 58.5
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.4e-32 145.2 197 45.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 3.1e-32 144.1 269 36.8
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.2e-32 143.3 292 36.6
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 4.4e-31 140.2 204 44.6
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.5e-31 139.4 269 37.9
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.7e-30 138.3 205 43.4
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.9e-30 137.5 160 48.1
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.9e-30 137.5 263 38.0
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 8.3e-30 136.0 207 43.0
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 4.1e-29 133.7 228 41.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 7.1e-29 132.9 183 44.8
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.7e-28 131.0 253 36.8
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.9e-27 127.1 276 35.5
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.9e-26 124.8 218 41.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 4.3e-26 123.6 279 32.6
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-25 120.6 103 62.1
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 2.6e-23 114.4 230 40.0
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.7e-22 111.7 260 33.8
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.7e-22 111.7 173 44.5
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 2.2e-22 111.3 162 43.2
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.9e-22 110.9 173 42.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.9e-21 108.2 211 38.4
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.7e-20 104.4 254 30.7
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.6e-20 103.6 117 53.0
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.7e-19 101.7 251 29.9
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 3.3e-18 97.4 210 35.2
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 7.3e-18 96.3 80 62.5
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 7.3e-18 96.3 104 49.0
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.1e-16 92.4 99 50.5
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.8e-16 91.7 55 78.2
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 6.9e-16 89.7 89 56.2
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 1.9e-13 81.6 260 30.4
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.9e-13 81.6 64 64.1
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-08 65.9 155 36.1
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.8e-08 65.1 64 56.2
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 1.5e-07 62.0 142 34.5
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.3e-06 58.9 139 36.0
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 6.4e-06 56.6 47 53.2


User provided reference genes

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