Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0235900 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.8e-80 300.8 152 100.0
Rhsim04G0238200 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.8e-28 129.8 65 93.8
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.3e-15 87.0 79 57.0
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.5e-14 82.8 79 57.0
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 6.8e-12 74.7 82 47.6
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.5e-11 73.6 74 52.7
vmacro08049 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 2.0e-11 73.2 104 39.4
Rhsim04G0237600 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.4e-11 72.4 86 50.0
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 4.4e-11 72.0 73 47.9
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.4e-11 72.0 84 48.8
Rhsim04G0238100 Rhododendron simsii HOM05D000862 ORTHO05D003588 9.8e-11 70.9 82 50.0
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 2.2e-10 69.7 69 53.6
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 2.9e-10 69.3 89 46.1
Rhsim04G0235800 Rhododendron simsii HOM05D000862 ORTHO05D003588 8.3e-10 67.8 62 58.1
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 5.4e-09 65.1 64 51.6
Rhsim04G0238300 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.4e-09 65.1 62 56.5
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 1.2e-08 63.9 59 52.5
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 1.6e-08 63.5 59 50.8
Peaxi162Scf00441g00622 Petunia axillaris HOM05D000862 ORTHO05D003588 1.0e-07 60.8 74 43.2
CANSAT25G2036 Cannabis sativa HOM05D000862 ORTHO05D000943 1.3e-07 60.5 67 46.3
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 1.3e-07 60.5 79 43.0
QL02p010275 Quercus lobata HOM05D000862 ORTHO05D000943 1.7e-07 60.1 71 42.3
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.3e-07 59.7 48 60.4
Aa31LG7G4300 Aethionema arabicum HOM05D000862 ORTHO05D000943 3.9e-07 58.9 79 38.0
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 3.9e-07 58.9 67 38.8
C05p18160 Brassica napus HOM05D000862 ORTHO05D000003 3.9e-07 58.9 67 43.3
BolC5t30523H Brassica oleracea HOM05D000862 ORTHO05D000003 3.9e-07 58.9 67 43.3
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 5.0e-07 58.5 76 43.4
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.6e-07 58.2 43 60.5
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.6e-07 58.2 43 60.5
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 6.6e-07 58.2 74 44.6
Lalb_Chr10g0103371 Lupinus albus HOM05D000862 ORTHO05D000943 6.6e-07 58.2 63 41.3
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 6.6e-07 58.2 62 43.5
ATR0665G023 Amborella trichopoda HOM05D000862 ORTHO05D000943 8.6e-07 57.8 77 39.0
TPR.G15181 Trifolium pratense HOM05D000862 ORTHO05D000943 8.6e-07 57.8 70 41.4
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.1e-06 57.4 76 46.1
arahy.Tifrunner.gnm1.ann1.8VYI8C Arachis hypogaea HOM05D000862 ORTHO05D000943 1.1e-06 57.4 70 40.0
arahy.Tifrunner.gnm1.ann1.VI7NX3 Arachis hypogaea HOM05D000862 ORTHO05D000943 1.1e-06 57.4 70 40.0
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 1.1e-06 57.4 82 40.2
CSS0022415 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.1e-06 57.4 77 44.2
ATR0789G103 Amborella trichopoda HOM05D000862 ORTHO05D000943 1.5e-06 57.0 70 42.9
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 1.5e-06 57.0 63 39.7
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 1.5e-06 57.0 47 55.3
Hma1.2p1_0040F.1_g025100 Hydrangea macrophylla HOM05D000862 ORTHO05D000943 1.5e-06 57.0 67 43.3
CANSAT25G1772 Cannabis sativa HOM05D000862 ORTHO05D000943 1.9e-06 56.6 57 45.6
Nitab4.5_0006269g0010 Nicotiana tabacum HOM05D000862 ORTHO05D000943 1.9e-06 56.6 65 44.6
PSO210G4227 Papaver somniferum HOM05D000862 ORTHO05D000943 1.9e-06 56.6 67 43.3
PSO210G7120 Papaver somniferum HOM05D000862 ORTHO05D000943 1.9e-06 56.6 67 43.3
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.5e-06 56.2 59 45.8
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 2.5e-06 56.2 65 43.1
Nitab4.5_0000798g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.5e-06 56.2 56 48.2
Rhsim04G0236900 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.5e-06 56.2 68 51.5
SalBow8G4155 Salvia bowleyana HOM05D000862 ORTHO05D000943 2.5e-06 56.2 83 37.3
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 3.3e-06 55.8 82 40.2
Hma1.2p1_1397F.1_g280670 Hydrangea macrophylla HOM05D000862 ORTHO05D000943 3.3e-06 55.8 53 49.1
Hma1.2p1_2241F.1_g317835 Hydrangea macrophylla HOM05D000862 ORTHO05D000943 3.3e-06 55.8 53 49.1
SalBow8G4313 Salvia bowleyana HOM05D000862 ORTHO05D000943 3.3e-06 55.8 78 41.0
Nitab4.5_0000029g0100 Nicotiana tabacum HOM05D000862 ORTHO05D000943 4.3e-06 55.5 63 44.4
TWI12G0321 Tripterygium wilfordii HOM05D000862 ORTHO05D000943 4.3e-06 55.5 70 38.6
CAN.G960.44 Capsicum annuum HOM05D000862 ORTHO05D000943 5.6e-06 55.1 70 40.0
CDE05G1578 Ceratophyllum demersum HOM05D000862 ORTHO05D000943 5.6e-06 55.1 63 41.3
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.6e-06 55.1 66 47.0
Sp1g17550 Schrenkiella parvula HOM05D000862 ORTHO05D000943 5.6e-06 55.1 67 43.3
VMungo0540G1698 Vigna mungo HOM05D000862 ORTHO05D000943 5.6e-06 55.1 70 40.0
EL10Ac1g00598 Beta vulgaris HOM05D000862 ORTHO05D000943 7.3e-06 54.7 55 43.6
Hma1.2p1_2581F.1_g324740 Hydrangea macrophylla HOM05D000862 ORTHO05D000943 7.3e-06 54.7 56 46.4
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 7.3e-06 54.7 55 47.3
Potri.005G232500 Populus trichocarpa HOM05D000862 ORTHO05D000943 7.3e-06 54.7 55 43.6
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 9.5e-06 54.3 58 50.0
Ciclev10000604m.g Citrus clementina HOM05D000862 ORTHO05D000943 9.5e-06 54.3 67 40.3
Cc10_g02350 Coffea canephora HOM05D000862 ORTHO05D000943 9.5e-06 54.3 78 38.5
Nitab4.5_0000941g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 9.5e-06 54.3 62 43.5
Peaxi162Scf00028g02010 Petunia axillaris HOM05D000862 ORTHO05D000943 9.5e-06 54.3 70 40.0
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 9.5e-06 54.3 86 40.7
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 9.5e-06 54.3 59 45.8
GSVIVG01009788001 Vitis vinifera HOM05D000862 ORTHO05D000943 9.5e-06 54.3 70 38.6


User provided reference genes

Program Settings