Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 3.2e-189 666.0 451 100.0
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 6.0e-143 512.3 459 81.3
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 5.3e-115 419.5 458 73.6
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.2e-114 418.3 250 84.0
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 1.9e-109 401.0 459 66.9
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 7.9e-103 379.0 464 67.5
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 5.1e-102 376.3 453 69.8
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 5.1e-102 376.3 455 69.5
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 8.2e-100 369.0 451 67.6
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 4.1e-99 366.7 457 62.6
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 1.7e-97 361.3 451 61.2
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.9e-97 360.5 461 62.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.0e-94 352.1 449 61.2
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 1.8e-94 351.3 259 70.7
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 2.3e-94 350.9 458 63.8
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 5.1e-94 349.7 423 62.2
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.7e-92 344.7 449 60.8
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.7e-92 344.7 451 65.0
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 3.7e-92 343.6 451 63.0
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.4e-91 341.7 452 63.7
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 3.1e-91 340.5 466 62.2
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 3.4e-90 337.0 454 61.7
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 2.9e-89 334.0 462 63.0
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 4.7e-87 326.6 451 59.6
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 2.3e-86 324.3 451 59.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 8.8e-86 322.4 439 60.4
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 8.8e-86 322.4 472 60.0
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.0e-85 321.2 451 59.2
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 2.6e-85 320.9 369 65.0
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 7.4e-85 319.3 453 62.7
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.7e-84 318.2 458 57.6
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 3.7e-84 317.0 430 64.0
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 6.3e-84 316.2 422 63.5
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.6e-82 311.6 260 62.7
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 2.9e-81 307.4 394 62.9
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 8.5e-81 305.8 394 61.4
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 1.9e-80 304.7 393 61.6
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.2e-79 302.0 406 60.3
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 2.7e-79 300.8 408 62.0
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 1.0e-78 298.9 401 60.6
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 1.4e-78 298.5 445 56.0
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 3.0e-78 297.4 367 58.0
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.8e-76 290.8 395 47.3
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.8e-76 290.8 268 56.7
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 4.8e-76 290.0 402 46.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 4.8e-76 290.0 258 62.0
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 6.3e-76 289.7 444 62.2
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.2e-74 285.4 395 46.1
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.2e-74 285.4 395 46.1
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.6e-74 285.0 451 56.8
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.0e-73 282.3 251 58.6
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.3e-73 282.0 439 59.0
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.3e-73 282.0 255 60.8
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 2.2e-73 281.2 421 63.2
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 2.2e-73 281.2 256 59.4
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 2.9e-73 280.8 255 59.6
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 5.5e-72 276.6 256 57.4
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.7e-71 274.2 248 58.1
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.0e-70 270.8 254 56.7
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 1.5e-69 268.5 402 45.0
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.2e-68 264.6 250 56.0
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 7.0e-67 259.6 364 59.3
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 1.6e-66 258.5 247 56.3
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 5.9e-66 256.5 355 60.6
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.7e-65 255.0 338 62.7
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.7e-65 255.0 167 73.1
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 8.5e-65 252.7 346 59.8
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 1.1e-64 252.3 386 55.2
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 2.7e-63 247.7 380 58.2
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 6.8e-62 243.0 219 57.5
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.6e-61 241.1 270 49.3
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 1.3e-60 238.8 170 65.3
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 8.3e-60 236.1 170 67.1
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.5e-56 225.3 241 53.1
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 2.5e-56 224.6 197 57.9
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 3.3e-56 224.2 342 59.6
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 8.6e-49 199.5 138 65.2
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 2.0e-45 188.3 137 61.3
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 5.8e-45 186.8 168 58.3
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 3.2e-43 181.0 187 48.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.3e-40 171.0 116 68.1
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 4.3e-40 170.6 426 50.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 1.2e-39 169.1 391 45.8
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 3.6e-39 167.5 461 46.2
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 1.7e-36 158.7 92 79.3
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.0e-33 149.4 241 65.1
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 1.8e-30 138.7 156 42.3
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 5.8e-29 133.7 144 46.5
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 2.2e-28 131.7 206 85.0
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.6e-26 125.6 164 47.6
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.1e-24 119.4 70 78.6
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 8.1e-23 113.2 98 50.0
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 8.1e-23 113.2 98 50.0
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 5.2e-22 110.5 98 53.1
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 5.2e-22 110.5 98 53.1
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 8.9e-22 109.8 67 76.1
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.3e-17 95.9 225 60.0
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 2.8e-15 88.2 91 41.8
Oeu036988.1 Olea europaea HOM05D002444 ORTHO05D009235 1.5e-13 82.4 98 43.9
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 3.5e-10 71.2 143 25.9
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 6.0e-10 70.5 143 26.6
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 3.0e-09 68.2 126 29.4
ClCG05G006410 Citrullus lanatus HOM05D002444 ORTHO05D009235 5.1e-09 67.4 78 39.7
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 8.7e-09 66.6 126 28.6
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 1.1e-08 66.2 143 23.8
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 2.5e-08 65.1 143 24.5
THA.LOC104806571 Tarenaya hassleriana HOM05D006895 ORTHO05D008605 3.3e-08 64.7 132 28.0
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 9.6e-08 63.2 155 25.2
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 2.1e-07 62.0 138 26.1
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 2.1e-07 62.0 166 19.9
CANSAT64G0911 Cannabis sativa HOM05D006740 ORTHO05D008571 3.6e-07 61.2 172 21.5
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 4.8e-07 60.8 142 23.2
AL5G28320 Arabidopsis lyrata HOM05D007409 ORTHO05D009264 6.2e-07 60.5 125 28.8
AT3G48810 Arabidopsis thaliana HOM05D007409 ORTHO05D009264 6.2e-07 60.5 125 28.8
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 6.2e-07 60.5 100 34.0
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 6.2e-07 60.5 190 23.2
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 6.2e-07 60.5 164 22.6
Potri.010G077400 Populus trichocarpa HOM05D006740 ORTHO05D008571 6.2e-07 60.5 169 21.3
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 8.1e-07 60.1 142 24.6
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 8.1e-07 60.1 156 26.3
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 8.1e-07 60.1 143 21.7
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 8.1e-07 60.1 153 26.1
COL.COLO4_34570 Corchorus olitorius HOM05D007409 ORTHO05D009264 1.1e-06 59.7 127 23.6
Migut.N01566 Erythranthe guttata HOM05D002986 ORTHO05D006011 1.1e-06 59.7 131 26.0
Nitab4.5_0002527g0080 Nicotiana tabacum HOM05D000716 ORTHO05D004822 1.1e-06 59.7 183 23.5
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 1.1e-06 59.7 211 24.2
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 1.1e-06 59.7 84 33.3
THA.LOC104818868 Tarenaya hassleriana HOM05D007409 ORTHO05D009264 1.4e-06 59.3 125 28.8
Atru.BG.215.p Acer truncatum HOM05D006740 ORTHO05D008571 1.8e-06 58.9 155 20.0
Migut.L00552 Erythranthe guttata HOM05D002986 ORTHO05D006011 1.8e-06 58.9 161 24.2
Solyc01g096210.4 Solanum lycopersicum HOM05D002986 ORTHO05D003966 1.8e-06 58.9 201 23.9
Prupe.2G106500 Prunus persica HOM05D002986 ORTHO05D003966 2.4e-06 58.5 132 28.8
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 2.4e-06 58.5 143 21.7
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 2.4e-06 58.5 143 21.7
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 2.4e-06 58.5 136 27.2
Carub.0005s1497 Capsella rubella HOM05D007409 ORTHO05D009264 3.1e-06 58.2 122 29.5
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 3.1e-06 58.2 153 22.9
Thhalv10012543m.g Eutrema salsugineum HOM05D006596 ORTHO05D008497 3.1e-06 58.2 170 24.7
Sp5g13220 Schrenkiella parvula HOM05D007409 ORTHO05D009264 3.1e-06 58.2 148 25.7
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 3.1e-06 58.2 192 22.4
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 4.0e-06 57.8 145 29.0
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 4.0e-06 57.8 178 29.8
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 4.0e-06 57.8 144 27.1
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 4.0e-06 57.8 118 23.7
CARHR157620 Cardamine hirsuta HOM05D007409 ORTHO05D009264 6.9e-06 57.0 125 28.0
ClCG06G004440 Citrullus lanatus HOM05D007409 ORTHO05D009264 6.9e-06 57.0 150 23.3
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 6.9e-06 57.0 136 25.7
SalBow3G2352 Salvia bowleyana HOM05D006740 ORTHO05D008571 6.9e-06 57.0 143 20.3
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 9.0e-06 56.6 145 26.2
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 9.0e-06 56.6 151 26.5
AUR62024804 Chenopodium quinoa HOM05D002986 ORTHO05D003966 9.0e-06 56.6 135 25.2
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 9.0e-06 56.6 166 20.5
SalBow3G1009 Salvia bowleyana HOM05D006740 ORTHO05D008571 9.0e-06 56.6 143 20.3


User provided reference genes

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