Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 0.0e+00 1183.7 638 100.0
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 4.7e-256 887.9 668 76.0
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 3.5e-235 818.5 680 68.5
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.5e-233 813.1 605 78.5
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.3e-229 800.0 671 68.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.2e-229 799.3 667 68.5
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 4.0e-223 778.5 651 67.9
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 3.3e-217 758.8 668 64.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 9.5e-217 757.3 666 65.2
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 9.9e-214 747.3 668 65.9
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 8.4e-213 744.2 658 66.0
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.1e-212 743.8 671 64.4
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.4e-212 743.4 689 62.7
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 7.1e-212 741.1 678 63.9
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 7.1e-212 741.1 673 64.0
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 9.2e-212 740.7 686 62.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.6e-211 740.0 685 62.9
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 6.0e-211 738.0 675 66.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 6.0e-211 738.0 669 63.7
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 8.7e-210 734.2 673 64.2
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 4.3e-209 731.9 671 62.9
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 9.6e-209 730.7 655 62.7
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.1e-208 729.6 676 61.8
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.6e-208 728.8 665 62.3
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.1e-207 727.2 668 62.9
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.8e-207 726.5 666 62.6
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 3.4e-206 722.2 664 62.7
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 5.8e-206 721.5 588 66.3
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 5.8e-206 721.5 666 62.6
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.4e-204 716.8 664 60.5
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 2.4e-204 716.1 626 64.9
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 5.4e-204 714.9 634 62.8
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 7.1e-204 714.5 660 62.9
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.1e-203 713.0 667 62.8
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 4.6e-203 711.8 671 61.3
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.3e-202 710.3 607 64.3
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.7e-202 709.9 607 64.3
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.7e-202 709.9 630 65.4
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.3e-202 709.5 633 62.2
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 5.1e-202 708.4 659 60.8
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.9e-201 706.4 670 60.0
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.3e-201 705.7 697 59.0
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.6e-201 704.9 614 64.7
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.3e-200 703.7 609 63.7
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.6e-200 703.4 672 61.9
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 4.8e-200 701.8 630 62.7
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 3.1e-199 699.1 679 61.6
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 4.0e-199 698.7 659 60.2
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 9.0e-199 697.6 670 59.0
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.2e-198 697.2 700 61.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.0e-198 696.4 673 62.1
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 7.6e-198 694.5 641 61.6
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 7.6e-198 694.5 663 59.6
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.7e-197 693.3 673 61.8
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.9e-197 692.6 659 59.9
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 5.4e-196 688.3 624 63.3
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 7.1e-196 688.0 652 61.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 9.3e-196 687.6 668 58.5
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 2.1e-195 686.4 686 58.2
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 2.1e-195 686.4 561 66.1
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.7e-195 686.0 641 60.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 4.6e-195 685.3 645 59.7
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 7.9e-195 684.5 668 59.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 3.0e-194 682.6 647 62.0
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 5.1e-194 681.8 673 58.8
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 6.7e-194 681.4 661 59.8
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 6.7e-194 681.4 582 63.9
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.3e-193 678.7 647 61.7
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.8e-192 676.0 635 62.0
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 6.2e-192 674.9 660 60.6
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 9.9e-190 667.5 647 60.9
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.4e-188 663.7 668 58.5
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 4.2e-188 662.1 646 59.4
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 9.3e-188 661.0 624 62.3
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.8e-186 656.8 664 57.4
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.3e-186 656.4 645 59.5
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.3e-186 656.4 673 58.5
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 6.7e-186 654.8 667 57.9
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 6.7e-186 654.8 631 61.2
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 8.7e-186 654.4 655 58.0
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.9e-185 653.3 663 58.7
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.9e-185 653.3 655 58.0
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 3.3e-185 652.5 606 61.1
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 3.3e-185 652.5 650 58.6
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-184 650.6 671 57.8
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.3e-184 650.6 653 57.9
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 4.8e-184 648.7 655 57.7
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.4e-183 647.1 644 58.7
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.8e-183 646.7 658 58.5
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.9e-181 639.4 537 64.4
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 5.5e-180 635.2 631 58.5
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 6.0e-179 631.7 643 58.8
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.5e-174 617.1 655 54.7
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.3e-169 599.0 511 64.0
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.7e-163 579.7 662 53.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 4.4e-161 572.4 670 52.1
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 7.4e-161 571.6 677 53.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 8.2e-160 568.2 670 53.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 6.5e-157 558.5 666 54.5
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.8e-152 542.3 423 72.6
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 1.1e-148 531.2 689 48.3
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 4.7e-131 472.6 561 47.1
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.5e-129 467.6 329 75.7
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 3.1e-127 459.9 594 46.6
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 2.0e-121 440.7 567 49.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 6.4e-120 435.6 595 47.6
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.5e-113 414.5 694 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 1.5e-108 397.9 690 40.0
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.1e-102 377.5 432 55.6
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 4.6e-102 376.3 509 48.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.0e-90 336.7 251 70.9
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 7.1e-87 325.9 643 33.9
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.4e-81 307.0 275 61.1
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 8.4e-80 302.4 392 49.2
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.4e-79 300.8 316 53.8
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.5e-76 291.6 276 58.3
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 4.8e-75 286.6 320 48.8
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 3.0e-61 240.7 656 29.1
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 6.3e-59 233.0 740 28.5
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.5e-57 228.4 149 76.5
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.0e-52 211.5 589 36.5
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 6.5e-48 196.4 206 58.3
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 2.3e-37 161.4 207 48.3
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.0e-37 161.0 177 52.5
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 5.7e-36 156.8 357 31.7
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 9.7e-36 156.0 261 41.8
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.7e-35 155.2 211 47.4
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.1e-34 151.0 149 59.7
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.7e-32 145.2 113 62.8
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 4.2e-31 140.6 99 73.7
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 2.3e-29 134.8 126 56.3
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 4.0e-29 134.0 207 43.5
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 6.8e-29 133.3 207 43.5
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 6.8e-29 133.3 98 62.2
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.8e-27 127.9 263 34.2
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 9.4e-23 112.8 151 47.0
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 5.9e-17 93.6 100 56.0
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.3e-16 92.4 120 48.3
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 6.6e-16 90.1 107 47.7
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 2.3e-13 81.6 142 35.9
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 5.2e-13 80.5 142 35.2
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 5.2e-13 80.5 142 35.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 6.8e-13 80.1 142 35.2
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 6.8e-13 80.1 142 35.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 8.9e-13 79.7 108 46.3
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 2.0e-12 78.6 142 34.5
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.7e-11 74.3 44 75.0
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 1.3e-08 65.9 42 66.7
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 4.3e-07 60.8 55 50.9
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 4.3e-07 60.8 55 50.9
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 1.6e-06 58.9 72 45.8


User provided reference genes

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