Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0195700 Rhododendron simsii HOM05D005575 ORTHO05D007355 1.3e-274 949.1 495 100.0
vmacro08393 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 4.8e-208 728.0 686 60.5
Actinidia08453 Actinidia chinensis HOM05D005575 ORTHO05D007355 3.9e-202 708.4 494 75.7
Dinv44604 Davidia involucrata HOM05D005575 ORTHO05D007355 4.5e-198 694.9 494 75.9
CSS0047423 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.6e-195 686.4 498 77.3
ECA240G2677 Erigeron canadensis HOM05D005575 ORTHO05D007355 8.0e-195 684.1 492 72.2
CSS0022244 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 1.0e-194 683.7 493 73.2
CSS0045755 Camellia sinensis var. sinensis HOM05D005575 ORTHO05D007355 3.0e-194 682.2 493 73.0
Cfa008407 Carpinus fangiana HOM05D005575 ORTHO05D007355 1.2e-193 680.2 494 72.5
Dinv14070 Davidia involucrata HOM05D005575 ORTHO05D007355 5.7e-193 677.9 495 72.9
GSVIVG01018083001 Vitis vinifera HOM05D005575 ORTHO05D007355 5.7e-193 677.9 493 74.0
Haze_11258 Corylus avellana HOM05D005575 ORTHO05D007355 1.7e-192 676.4 494 73.1
MELO3C006485.2 Cucumis melo HOM05D005575 ORTHO05D007355 1.3e-189 666.8 493 70.2
Nn3g19479 Nelumbo nucifera HOM05D005575 ORTHO05D007355 1.7e-189 666.4 494 74.3
Cc03_g04530 Coffea canephora HOM05D005575 ORTHO05D007355 2.2e-189 666.0 492 70.9
ClCG05G004730 Citrullus lanatus HOM05D005575 ORTHO05D007355 2.9e-189 665.6 493 71.6
CsaV3_3G012740 Cucumis sativus L. HOM05D005575 ORTHO05D007355 1.1e-188 663.7 493 69.8
CiPaw.01G193100 Carya illinoinensis HOM05D005575 ORTHO05D007355 3.2e-188 662.1 494 70.6
Lsat_1_v5_gn_3_124080 Lactuca sativa HOM05D005575 ORTHO05D007355 4.2e-188 661.8 489 71.2
CANSAT78G2185 Cannabis sativa HOM05D005575 ORTHO05D007355 5.5e-188 661.4 494 70.4
Prupe.1G025500 Prunus persica HOM05D005575 ORTHO05D007355 7.2e-188 661.0 500 73.0
QL06p000355 Quercus lobata HOM05D005575 ORTHO05D007355 7.2e-188 661.0 497 72.6
Rhsim02G0032000 Rhododendron simsii HOM05D005575 ORTHO05D007355 8.0e-187 657.5 490 72.4
Potri.008G159900 Populus trichocarpa HOM05D005575 ORTHO05D007355 1.4e-186 656.8 492 72.6
Manes.03G170700 Manihot esculenta HOM05D005575 ORTHO05D007355 2.3e-186 656.0 494 70.6
Eucgr.H03187 Eucalyptus grandis HOM05D005575 ORTHO05D007355 3.0e-186 655.6 493 70.4
HanXRQChr13g0423561 Helianthus annuus HOM05D005575 ORTHO05D007355 3.0e-186 655.6 492 69.3
TWI53G0136 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 6.8e-186 654.4 495 70.3
Ca_01767_v3 Cicer arietinum L. HOM05D005575 ORTHO05D007355 2.6e-185 652.5 495 71.1
Nitab4.5_0012347g0010 Nicotiana tabacum HOM05D005575 ORTHO05D007355 4.4e-185 651.7 494 69.6
SalBow3G3314 Salvia bowleyana HOM05D005575 ORTHO05D007355 9.8e-185 650.6 497 70.8
Medtr1g041115 Medicago truncatula HOM05D005575 ORTHO05D007355 1.7e-184 649.8 494 71.1
Sabra08G0121800 Salix brachista HOM05D005575 ORTHO05D007355 2.2e-184 649.4 519 68.6
Psat6g136600 Pisum sativum HOM05D005575 ORTHO05D007355 2.8e-184 649.0 494 72.1
Thecc.04G242000 Theobroma cacao HOM05D005575 ORTHO05D007355 2.8e-184 649.0 494 68.8
Lalb_Chr01g0020841 Lupinus albus HOM05D005575 ORTHO05D007355 4.8e-184 648.3 495 71.1
Glyma.02G001600 Glycine max HOM05D005575 ORTHO05D007355 2.4e-183 646.0 494 70.0
COL.COLO4_13167 Corchorus olitorius HOM05D005575 ORTHO05D007355 5.4e-183 644.8 494 68.0
Oeu064221.1 Olea europaea HOM05D005575 ORTHO05D007355 5.4e-183 644.8 510 68.2
Peaxi162Scf00788g00114 Petunia axillaris HOM05D005575 ORTHO05D007355 5.4e-183 644.8 494 69.0
VMungo0720G2094 Vigna mungo HOM05D005575 ORTHO05D007355 1.6e-182 643.3 494 70.6
Nitab4.5_0000941g0050 Nicotiana tabacum HOM05D005575 ORTHO05D007355 2.0e-182 642.9 494 70.2
Phvul.007G279400 Phaseolus vulgaris HOM05D005575 ORTHO05D007355 2.0e-182 642.9 494 70.9
PSO210G5698 Papaver somniferum HOM05D005575 ORTHO05D007355 4.5e-182 641.7 493 69.4
Lj6g0016373 Lotus japonicus HOM05D005575 ORTHO05D007355 5.9e-182 641.3 495 71.3
PSO461G0077 Papaver somniferum HOM05D005575 ORTHO05D007355 1.0e-181 640.6 493 69.2
EL10Ac8g19543 Beta vulgaris HOM05D005575 ORTHO05D007355 1.7e-181 639.8 515 66.2
Manes.15G034800 Manihot esculenta HOM05D005575 ORTHO05D007355 1.7e-181 639.8 494 68.6
Sed0020385 Sechium edule HOM05D005575 ORTHO05D007355 1.7e-181 639.8 492 68.3
Duzib052G1036 Durio zibethinus HOM05D005575 ORTHO05D007355 2.9e-181 639.0 494 68.0
MSTRG.24710 Avicennia marina HOM05D005575 ORTHO05D007355 8.6e-181 637.5 496 70.2
Glyma.10G001900 Glycine max HOM05D005575 ORTHO05D007355 8.6e-181 637.5 494 69.8
MD16G1218200 Malus domestica HOM05D005575 ORTHO05D007355 8.6e-181 637.5 454 73.3
Gohir.A10G117000 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.1e-180 637.1 493 67.7
COL.COLO4_26929 Corchorus olitorius HOM05D005575 ORTHO05D007355 2.5e-180 636.0 494 67.4
MD13G1203000 Malus domestica HOM05D005575 ORTHO05D007355 3.2e-180 635.6 454 73.1
PGSC0003DMG401006082 Solanum tuberosum HOM05D005575 ORTHO05D007355 3.2e-180 635.6 493 69.2
Gorai.011G167300 Gossypium raimondii HOM05D005575 ORTHO05D007355 4.2e-180 635.2 493 68.0
arahy.Tifrunner.gnm1.ann1.0U5UXQ Arachis hypogaea HOM05D005575 ORTHO05D007355 7.2e-180 634.4 494 70.2
Gohir.D10G150300 Gossypium hirsutum HOM05D005575 ORTHO05D007355 1.6e-179 633.3 493 67.5
TWI09G0420 Tripterygium wilfordii HOM05D005575 ORTHO05D007355 1.6e-179 633.3 492 68.3
SGA_v2.0_scaffold79G25614 Striga asiatica HOM05D005575 ORTHO05D007355 3.6e-179 632.1 498 68.3
arahy.Tifrunner.gnm1.ann1.XPT1GW Arachis hypogaea HOM05D005575 ORTHO05D007355 2.3e-178 629.4 494 70.0
Solyc09g083000.3 Solanum lycopersicum HOM05D005575 ORTHO05D007355 3.0e-178 629.0 493 68.6
Sopen09g031870 Solanum pennellii HOM05D005575 ORTHO05D007355 5.2e-178 628.2 495 69.1
RcHm_v2.0_Chr4g0388931 Rosa chinensis HOM05D005575 ORTHO05D007355 1.2e-177 627.1 497 69.2
Duzib151G0571 Durio zibethinus HOM05D005575 ORTHO05D007355 2.6e-177 625.9 494 67.0
Ciclev10004932m.g Citrus clementina HOM05D005575 ORTHO05D007355 9.8e-177 624.0 446 71.5
DCAR_030703 Daucus carota HOM05D005575 ORTHO05D007355 2.8e-176 622.5 397 75.8
Nitab4.5_0003815g0070 Nicotiana tabacum HOM05D005575 ORTHO05D007355 3.7e-176 622.1 493 69.4
Atru.chr4.2312 Acer truncatum HOM05D005575 ORTHO05D007355 1.4e-175 620.2 495 68.1
PGSC0003DMG400013391 Solanum tuberosum HOM05D005575 ORTHO05D007355 1.4e-175 620.2 497 69.4
BcaB06g26421 Brassica carinata HOM05D005575 ORTHO05D007355 2.4e-175 619.4 492 67.9
FAN17G2264 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.4e-175 619.4 495 67.9
Peaxi162Scf00467g00914 Petunia axillaris HOM05D005575 ORTHO05D007355 2.4e-175 619.4 496 67.1
FvH4_4g01960 Fragaria vesca HOM05D005575 ORTHO05D007355 4.1e-175 618.6 495 68.1
Solyc03g005310.4 Solanum lycopersicum HOM05D005575 ORTHO05D007355 5.4e-175 618.2 497 69.0
Nitab4.5_0000977g0090 Nicotiana tabacum HOM05D005575 ORTHO05D007355 9.2e-175 617.5 494 69.2
Sopen03g001350 Solanum pennellii HOM05D005575 ORTHO05D007355 3.5e-174 615.5 497 68.8
BraA05t21452Z Brassica rapa HOM05D005575 ORTHO05D007355 4.5e-174 615.1 492 66.5
Sc25g0004210 Simmondsia chinensis HOM05D005575 ORTHO05D007355 4.5e-174 615.1 495 67.7
TPR.G32768 Trifolium pratense HOM05D005575 ORTHO05D007355 4.5e-174 615.1 490 67.6
Aa31LG8G9490 Aethionema arabicum HOM05D005575 ORTHO05D007355 7.8e-174 614.4 493 67.7
A05p25710 Brassica napus HOM05D005575 ORTHO05D007355 1.0e-173 614.0 492 66.3
CARHR098930 Cardamine hirsuta HOM05D005575 ORTHO05D007355 6.6e-173 611.3 492 66.3
PGR004G2878 Punica granatum HOM05D005575 ORTHO05D007355 2.5e-172 609.4 497 66.8
BcaC05g27989 Brassica carinata HOM05D005575 ORTHO05D007355 3.3e-172 609.0 492 66.3
C05p40000 Brassica napus HOM05D005575 ORTHO05D007355 3.3e-172 609.0 492 66.3
BolC5t32746H Brassica oleracea HOM05D005575 ORTHO05D007355 3.3e-172 609.0 492 66.3
Thhalv10020692m.g Eutrema salsugineum HOM05D005575 ORTHO05D007355 5.6e-172 608.2 492 66.7
Sp3g20680 Schrenkiella parvula HOM05D005575 ORTHO05D007355 5.6e-172 608.2 492 66.5
Hund21566 Selenicereus undatus HOM05D005575 ORTHO05D007355 1.2e-171 607.1 494 66.8
FAN22G1081 Fragaria x ananassa HOM05D005575 ORTHO05D007355 2.1e-171 606.3 494 67.2
vmacro15397 Vaccinium macrocarpon HOM05D005575 ORTHO05D007355 4.7e-171 605.1 417 75.5
Migut.N00227 Erythranthe guttata HOM05D005575 ORTHO05D007355 6.1e-171 604.7 497 67.0
CAN.G749.16 Capsicum annuum HOM05D005575 ORTHO05D007355 4.0e-170 602.1 449 68.4
Cpa.g.sc58.3 Carica papaya HOM05D005575 ORTHO05D007355 5.2e-170 601.7 494 67.0
AL3G37400 Arabidopsis lyrata HOM05D005575 ORTHO05D007355 5.7e-169 598.2 492 65.9
AUR62034661 Chenopodium quinoa HOM05D005575 ORTHO05D007355 7.5e-169 597.8 446 68.8
AT3G22990 Arabidopsis thaliana HOM05D005575 ORTHO05D007355 9.8e-169 597.4 492 65.2
Carub.0003s2315 Capsella rubella HOM05D005575 ORTHO05D007355 9.8e-169 597.4 492 65.2
Migut.G00397 Erythranthe guttata HOM05D005575 ORTHO05D007355 1.4e-167 593.6 492 64.8
Os07g0609766 Oryza sativa ssp. japonica HOM05D005575 ORTHO05D007355 1.1e-164 583.9 489 64.6
HPP92_006286 Vanilla planifolia HOM05D005575 ORTHO05D007355 4.3e-164 582.0 493 63.7
ATR0665G105 Amborella trichopoda HOM05D005575 ORTHO05D007355 2.8e-163 579.3 488 62.3
Zm00001eb183490 Zea mays HOM05D005575 ORTHO05D007355 1.3e-160 570.5 487 62.6
AUR62008592 Chenopodium quinoa HOM05D005575 ORTHO05D007355 9.2e-159 564.3 396 72.7
SGA_v2.0_scaffold101G29757 Striga asiatica HOM05D005575 ORTHO05D007355 9.2e-159 564.3 493 63.7
unitig_62.g23259 Utricularia gibba HOM05D005575 ORTHO05D007355 3.6e-155 552.4 494 60.7
SEGI_28733 Sequoiadendron giganteum HOM05D005575 ORTHO05D007355 2.4e-151 539.7 450 62.0
Lj3A720G71 Lonicera japonica HOM05D005575 ORTHO05D007355 6.6e-141 505.0 313 81.2
FAN12G1274 Fragaria x ananassa HOM05D005575 ORTHO05D007355 1.2e-134 484.2 412 66.0
Mapoly0008s0256 Marchantia polymorpha HOM05D005575 ORTHO05D007355 4.6e-134 482.3 416 59.6
SMO230G0018 Selaginella moellendorffii HOM05D005575 ORTHO05D007355 7.1e-127 458.4 395 58.2
AagrBONN_evm.TU.Sc2ySwM_117.635 Anthoceros agrestis HOM05D005575 ORTHO05D007355 6.0e-126 455.3 403 56.6
Pp3c9_410 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.0e-109 399.8 488 48.8
SHI00566 Sapria himalayana HOM05D005575 ORTHO05D007355 1.1e-95 354.8 285 61.8
Pp3c15_1060 Physcomitrium patens HOM05D005575 ORTHO05D007355 3.2e-95 353.2 442 48.6
Nn1g02522 Nelumbo nucifera HOM05D005575 ORTHO05D007355 4.8e-91 339.3 293 65.9
CBR_g10806 Chara braunii HOM05D005575 ORTHO05D007355 6.3e-91 339.0 519 37.8
Actinidia05473 Actinidia chinensis HOM05D005575 ORTHO05D007355 2.3e-77 293.9 188 78.7
BcaC05g25996 Brassica carinata HOM05D005575 ORTHO05D007355 1.2e-62 245.0 303 51.5
BolC5t30651H Brassica oleracea HOM05D005575 ORTHO05D007355 1.7e-56 224.6 288 50.3
C05p19490 Brassica napus HOM05D005575 ORTHO05D007355 2.3e-56 224.2 288 50.3
TAR365G1190 Trochodendron aralioides HOM05D005575 ORTHO05D007355 9.5e-55 218.8 207 58.9
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 1.1e-42 178.7 145 63.4
C08p25570 Brassica napus HOM05D005575 ORTHO05D027690 1.2e-41 175.3 146 62.3
SHI00565 Sapria himalayana HOM05D005575 ORTHO05D007355 4.4e-36 156.8 198 48.5
BolC8t50179H Brassica oleracea HOM05D005575 ORTHO05D027690 6.4e-35 152.9 123 63.4
TAR365G1076 Trochodendron aralioides HOM05D005575 ORTHO05D007355 4.6e-33 146.7 154 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3391 Anthoceros agrestis HOM05D005575 ORTHO05D007355 4.4e-28 130.2 373 29.0
BcaC07g39513 Brassica carinata HOM05D005575 ORTHO05D027690 1.6e-22 111.7 60 86.7
SalBow3G4542 Salvia bowleyana HOM05D005575 ORTHO05D007355 5.1e-16 90.1 56 80.4
Psat7g122560 Pisum sativum HOM05D005575 ORTHO05D007355 1.9e-15 88.2 59 66.1
Sabra10G0062800 Salix brachista HOM05D005575 ORTHO05D027690 3.3e-15 87.4 70 71.4
Cc06_g23150 Coffea canephora HOM05D005575 ORTHO05D007355 8.7e-08 62.8 66 63.6


User provided reference genes

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