Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 6.5e-247 857.4 611 100.0
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 5.3e-132 475.7 630 68.6
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.5e-131 474.2 433 59.1
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 2.0e-123 447.2 581 67.8
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 2.2e-122 443.7 618 65.7
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.4e-121 441.0 421 54.9
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 1.8e-119 434.1 444 54.7
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 2.0e-118 430.6 429 54.3
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.3e-117 427.9 430 54.9
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 2.4e-116 423.7 450 53.3
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 3.1e-116 423.3 430 54.4
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 1.7e-114 417.5 443 50.1
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.2e-112 411.4 381 55.6
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 1.8e-111 407.5 429 54.5
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 3.3e-110 403.3 409 53.1
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 3.7e-109 399.8 417 52.3
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 4.1e-108 396.4 415 51.6
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 1.2e-107 394.8 444 52.0
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 7.2e-105 385.6 416 51.9
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 3.4e-102 376.7 413 50.6
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 1.1e-100 371.7 422 50.7
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 2.4e-100 370.5 410 51.5
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 3.1e-100 370.2 422 50.7
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 5.4e-100 369.4 428 49.3
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.6e-99 367.9 328 57.3
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 2.7e-99 367.1 427 48.5
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 1.7e-98 364.4 426 48.8
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 1.1e-97 361.7 427 46.8
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.5e-97 361.3 420 48.3
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 1.2e-96 358.2 436 47.0
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.2e-96 358.2 410 49.3
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.1e-96 357.5 428 47.9
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 1.8e-95 354.4 342 54.1
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 6.8e-95 352.4 418 48.3
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 2.0e-94 350.9 422 47.6
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 3.4e-94 350.1 416 47.4
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 5.7e-94 349.4 415 48.0
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 5.7e-94 349.4 360 48.9
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 1.7e-93 347.8 415 45.8
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.0e-92 342.4 426 46.2
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 2.0e-91 340.9 413 46.5
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 5.0e-90 336.3 369 49.3
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 5.0e-90 336.3 373 48.8
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 5.6e-89 332.8 423 47.3
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 5.6e-89 332.8 391 48.8
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 7.3e-89 332.4 418 45.2
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 9.5e-89 332.0 416 45.9
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 6.8e-87 325.9 402 44.8
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 8.9e-87 325.5 363 48.8
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 2.0e-86 324.3 416 45.2
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 2.9e-85 320.5 380 47.4
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 2.0e-83 314.3 325 52.0
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 7.8e-83 312.4 382 44.8
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 1.5e-81 308.1 397 45.6
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 2.1e-80 304.3 389 45.2
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 6.2e-80 302.8 389 45.2
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 1.4e-79 301.6 398 44.0
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 1.8e-79 301.2 354 48.6
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 4.0e-79 300.1 416 43.0
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.9e-76 291.2 328 51.5
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.4e-76 290.8 395 67.6
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 4.1e-76 290.0 390 42.8
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 5.4e-76 289.7 206 68.4
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 9.2e-76 288.9 390 43.8
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 9.2e-76 288.9 390 43.8
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 1.6e-75 288.1 410 42.7
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 2.1e-75 287.7 334 46.4
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 6.0e-75 286.2 402 41.0
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 6.0e-75 286.2 334 46.1
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 2.3e-74 284.3 329 50.8
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 9.5e-73 278.9 324 47.8
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 2.8e-72 277.3 329 49.5
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 2.8e-72 277.3 323 48.6
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.2e-70 271.9 324 49.4
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 1.5e-70 271.6 326 45.4
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 3.4e-70 270.4 205 65.4
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 5.8e-70 269.6 327 44.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 1.9e-68 264.6 324 46.0
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 1.3e-66 258.5 365 41.4
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 2.5e-65 254.2 321 46.1
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 9.6e-65 252.3 333 42.0
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 9.6e-65 252.3 396 38.6
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.8e-63 248.1 354 42.4
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 5.2e-63 246.5 320 44.4
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 2.4e-60 237.7 326 44.2
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.3e-58 231.9 379 38.5
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 5.1e-58 229.9 326 44.2
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.5e-57 228.4 379 37.5
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.3e-56 225.3 197 58.4
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 5.3e-55 219.9 422 36.3
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 2.0e-54 218.0 424 37.7
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 1.7e-53 214.9 204 53.9
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.4e-52 211.8 345 40.3
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.4e-52 211.1 249 47.8
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.7e-50 204.9 362 37.8
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 8.7e-50 202.6 326 41.1
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 9.0e-47 192.6 225 45.3
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 6.4e-45 186.4 302 36.8
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 3.5e-43 180.6 135 67.4
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 4.8e-24 117.1 111 52.3
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 5.9e-22 110.2 76 68.4
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 1.7e-13 82.0 148 31.8
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 3.0e-10 71.2 264 24.2
Zm00001eb169740 Zea mays HOM05D000001 ORTHO05D010175 8.8e-10 69.7 303 21.8
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.1e-09 69.3 41 68.3
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 1.5e-09 68.9 259 22.8
Cfa013826 Carpinus fangiana HOM05D000001 ORTHO05D010175 5.7e-09 67.0 195 24.6
Os11g0482400 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D010175 5.7e-09 67.0 196 24.0
HanXRQChr15g0481881 Helianthus annuus HOM05D000001 ORTHO05D000003 7.4e-09 66.6 223 23.8
ECA236G2823 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.7e-09 66.2 213 23.0
Haze_22498 Corylus avellana HOM05D000001 ORTHO05D010175 1.7e-08 65.5 195 24.1
Sp7g18820 Schrenkiella parvula HOM05D005973 ORTHO05D007285 2.8e-08 64.7 190 26.3
THA.LOC104816147 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 3.7e-08 64.3 214 20.1
SalBow7G1772 Salvia bowleyana HOM05D000001 ORTHO05D000003 4.8e-08 63.9 283 22.3
AagrBONN_evm.TU.Sc2ySwM_228.5723 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.3e-08 63.5 205 24.4
Sopen11g003140 Solanum pennellii HOM05D000001 ORTHO05D000003 8.2e-08 63.2 202 24.8
TPR.G27049 Trifolium pratense HOM05D000001 ORTHO05D010175 8.2e-08 63.2 192 24.0
RcHm_v2.0_Chr7g0233371 Rosa chinensis HOM05D000001 ORTHO05D010175 1.1e-07 62.8 217 24.4
Solyc11g007230.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 1.1e-07 62.8 202 24.8
THA.LOC104821986 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 1.4e-07 62.4 189 27.5
Psat2g064000 Pisum sativum HOM05D000001 ORTHO05D010175 1.8e-07 62.0 218 22.5
Aa31sc12G200 Aethionema arabicum HOM05D000001 ORTHO05D000003 2.4e-07 61.6 198 25.8
vmacro20006 Vaccinium macrocarpon HOM05D002479 ORTHO05D002675 2.4e-07 61.6 321 21.5
CiPaw.16G118300 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.1e-07 61.2 189 25.4
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 4.1e-07 60.8 136 27.2
CiPaw.07G162100 Carya illinoinensis HOM05D000001 ORTHO05D010175 4.1e-07 60.8 195 23.1
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 4.1e-07 60.8 312 19.9
FvH4_5g33990 Fragaria vesca HOM05D000001 ORTHO05D010175 4.1e-07 60.8 195 24.1
MD15G1390700 Malus domestica HOM05D000001 ORTHO05D010175 4.1e-07 60.8 195 23.6
QL12p039946 Quercus lobata HOM05D000001 ORTHO05D010175 4.1e-07 60.8 196 25.0
Eucgr.D02231 Eucalyptus grandis HOM05D000001 ORTHO05D004269 5.3e-07 60.5 147 27.9
Sed0022984 Sechium edule HOM05D000001 ORTHO05D000003 5.3e-07 60.5 189 23.8
BraA01t01158Z Brassica rapa HOM05D005973 ORTHO05D007285 7.0e-07 60.1 188 26.1
COL.COLO4_16762 Corchorus olitorius HOM05D006156 ORTHO05D007699 7.0e-07 60.1 201 24.4
TWI38G0505 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 9.1e-07 59.7 233 20.2
Aa31LG1G3360 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.2e-06 59.3 186 23.7
arahy.Tifrunner.gnm1.ann1.7QQU10 Arachis hypogaea HOM05D000001 ORTHO05D010175 1.2e-06 59.3 188 21.8
arahy.Tifrunner.gnm1.ann1.F6CXU9 Arachis hypogaea HOM05D000001 ORTHO05D010175 1.2e-06 59.3 188 21.8
AL1G46610 Arabidopsis lyrata HOM05D000001 ORTHO05D010365 2.0e-06 58.5 235 24.7
CARHR061800 Cardamine hirsuta HOM05D000001 ORTHO05D000003 2.0e-06 58.5 150 28.7
FvH4_4g11480 Fragaria vesca HOM05D008684 ORTHO05D010796 2.0e-06 58.5 343 22.2
Lalb_Chr04g0257851 Lupinus albus HOM05D000001 ORTHO05D000003 2.0e-06 58.5 227 22.9
Ciclev10018890m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.6e-06 58.2 189 22.2
THA.LOC104798871 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 2.6e-06 58.2 216 20.8
Atru.BG.69.p Acer truncatum HOM05D000001 ORTHO05D000003 3.5e-06 57.8 190 22.6
Prupe.1G285700 Prunus persica HOM05D005622 ORTHO05D002854 3.5e-06 57.8 332 20.5
CAN.G730.50 Capsicum annuum HOM05D000001 ORTHO05D000003 4.5e-06 57.4 204 24.0
FAN04G2674 Fragaria x ananassa HOM05D000001 ORTHO05D010175 4.5e-06 57.4 217 23.0
A01p12160 Brassica napus HOM05D005973 ORTHO05D007285 5.9e-06 57.0 189 25.4
CARHR067890 Cardamine hirsuta HOM05D000001 ORTHO05D000003 5.9e-06 57.0 341 19.1
Thhalv10019713m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 5.9e-06 57.0 146 27.4
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 5.9e-06 57.0 262 19.8
BcaB08g35191 Brassica carinata HOM05D000001 ORTHO05D000003 7.7e-06 56.6 188 25.0
BcaC07g42658 Brassica carinata HOM05D000001 ORTHO05D000003 7.7e-06 56.6 188 25.0
Ciclev10000550m.g Citrus clementina HOM05D000001 ORTHO05D010175 7.7e-06 56.6 195 22.6
MBI06_g08450_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 7.7e-06 56.6 153 22.9
MD07G1126900 Malus domestica HOM05D000001 ORTHO05D000003 7.7e-06 56.6 207 20.8
Manes.14G156200 Manihot esculenta HOM05D000001 ORTHO05D010426 7.7e-06 56.6 280 20.7
Phvul.007G066000 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 7.7e-06 56.6 266 22.2
Prupe.1G539500 Prunus persica HOM05D000001 ORTHO05D010175 7.7e-06 56.6 195 23.6
SMO234G0081 Selaginella moellendorffii HOM05D000001 ORTHO05D376482 7.7e-06 56.6 143 26.6
THA.LOC104815925 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 7.7e-06 56.6 210 21.9
Thecc.08G076000 Theobroma cacao HOM05D000001 ORTHO05D010175 7.7e-06 56.6 195 22.6
TAR629G1135 Trochodendron aralioides HOM05D005622 ORTHO05D002854 7.7e-06 56.6 335 19.7


User provided reference genes

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