Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.6e-112 408.3 213 100.0
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.0e-94 349.4 213 89.2
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 3.7e-88 328.6 217 81.1
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 7.6e-78 294.3 196 77.6
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.0e-77 293.9 196 77.6
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 2.2e-77 292.7 196 79.1
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 1.2e-75 287.0 196 75.5
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 5.7e-73 278.1 194 74.7
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.4e-71 273.5 196 72.4
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.8e-71 273.1 194 72.7
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 2.4e-71 272.7 194 71.6
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 3.1e-71 272.3 194 72.2
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 5.3e-71 271.6 196 71.9
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 9.0e-71 270.8 194 71.6
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.5e-70 270.0 194 72.2
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 2.0e-70 269.6 194 71.1
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 2.0e-70 269.6 194 71.1
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 2.0e-70 269.6 194 72.7
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 2.0e-70 269.6 194 69.6
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 3.4e-70 268.9 206 67.5
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 4.5e-70 268.5 194 70.6
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 4.5e-70 268.5 194 69.1
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 4.5e-70 268.5 194 70.6
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 7.7e-70 267.7 194 69.1
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 7.7e-70 267.7 194 70.1
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.0e-69 267.3 194 72.2
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 1.3e-69 266.9 196 70.4
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 1.7e-69 266.5 194 70.6
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.7e-69 266.5 194 69.6
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 2.2e-69 266.2 195 71.3
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 2.2e-69 266.2 194 69.6
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 3.8e-69 265.4 194 69.6
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 3.8e-69 265.4 189 72.5
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 5.0e-69 265.0 202 69.3
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 6.5e-69 264.6 194 70.1
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 6.5e-69 264.6 196 68.9
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 2.5e-68 262.7 189 72.5
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 2.5e-68 262.7 196 68.9
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 3.2e-68 262.3 196 67.9
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 3.2e-68 262.3 194 68.6
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 4.2e-68 261.9 194 69.1
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 5.5e-68 261.5 194 68.6
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 9.4e-68 260.8 194 68.6
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 9.4e-68 260.8 194 69.1
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 9.4e-68 260.8 195 69.2
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.2e-67 260.4 196 70.9
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 1.2e-67 260.4 194 67.0
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 2.1e-67 259.6 195 67.7
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.1e-67 259.6 194 68.6
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.7e-67 259.2 194 68.6
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 4.6e-67 258.5 194 69.6
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 4.6e-67 258.5 196 69.9
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 6.1e-67 258.1 195 70.3
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 6.1e-67 258.1 194 67.0
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 6.1e-67 258.1 189 71.4
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 7.9e-67 257.7 194 67.0
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.0e-66 257.3 194 68.0
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.0e-66 257.3 194 68.0
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.0e-66 257.3 194 70.6
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 1.0e-66 257.3 196 67.9
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 1.4e-66 256.9 194 69.1
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 1.8e-66 256.5 194 68.0
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 1.8e-66 256.5 194 65.5
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 2.3e-66 256.1 194 67.0
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 3.9e-66 255.4 194 67.5
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 6.7e-66 254.6 190 68.9
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 6.7e-66 254.6 194 69.6
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.1e-65 253.8 194 66.5
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 3.3e-65 252.3 194 66.0
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 5.7e-65 251.5 195 65.6
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 5.7e-65 251.5 225 61.3
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 9.7e-65 250.8 192 66.1
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 9.7e-65 250.8 205 65.9
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 1.3e-64 250.4 196 68.4
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 1.7e-64 250.0 194 65.5
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 2.2e-64 249.6 194 66.0
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 2.8e-64 249.2 200 64.0
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 3.7e-64 248.8 194 65.5
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 3.7e-64 248.8 194 65.5
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 4.8e-64 248.4 198 64.6
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 6.3e-64 248.1 238 58.0
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 4.5e-62 241.9 191 68.6
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 2.2e-61 239.6 194 63.4
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.9e-61 239.2 193 72.0
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 8.5e-61 237.7 194 63.4
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.1e-60 237.3 194 62.4
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.4e-60 236.9 194 63.4
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 7.2e-60 234.6 191 65.4
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.0e-58 230.7 215 58.1
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.7e-57 224.9 216 56.9
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 9.7e-57 224.2 191 62.3
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 1.3e-56 223.8 196 62.8
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.8e-56 222.6 165 70.9
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.1e-55 220.7 225 54.7
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 1.2e-54 217.2 166 68.7
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.1e-49 200.7 161 65.2
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 7.5e-49 198.0 195 52.8
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 8.2e-48 194.5 181 55.2
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 3.1e-47 192.6 191 60.7
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 1.2e-46 190.7 162 62.3
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 1.3e-45 187.2 122 74.6
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.9e-45 186.0 186 55.9
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 3.4e-41 172.6 198 47.0
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 1.7e-40 170.2 196 47.4
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 9.1e-39 164.5 191 47.6
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.2e-37 159.8 93 87.1
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 4.7e-35 152.1 121 66.1
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 6.1e-35 151.8 114 68.4
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 1.3e-32 144.1 185 45.4
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 1.7e-29 133.7 103 67.0
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 6.6e-29 131.7 113 61.1
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.8e-27 126.3 183 43.2
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 3.4e-25 119.4 137 50.4
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 3.7e-24 115.9 138 49.3
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 3.7e-24 115.9 138 49.3
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 2.4e-23 113.2 105 57.1
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 4.9e-16 89.0 59 71.2
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 2.4e-15 86.7 65 66.2
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 1.4e-10 70.9 71 57.7
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 2.3e-10 70.1 73 52.1
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 3.7e-08 62.8 32 90.6
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 3.2e-07 59.7 32 84.4


User provided reference genes

Program Settings