Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.9e-99 365.9 192 100.0
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.1e-94 348.6 213 89.2
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 2.7e-74 282.3 217 72.8
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 1.8e-65 253.1 196 71.4
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.8e-65 253.1 196 69.9
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.3e-65 252.7 196 69.9
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 2.8e-63 245.7 196 67.9
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.6e-61 239.2 171 74.3
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 3.4e-61 238.8 177 76.8
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.0e-60 237.3 196 65.8
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 1.3e-60 236.9 194 65.5
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 2.2e-60 236.1 194 67.5
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 2.9e-60 235.7 194 65.5
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 5.0e-60 235.0 194 65.5
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 6.5e-60 234.6 194 65.5
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 1.1e-59 233.8 194 64.9
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 1.4e-59 233.4 194 64.9
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 1.4e-59 233.4 194 64.9
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 4.2e-59 231.9 194 63.9
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 5.5e-59 231.5 194 62.9
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 5.5e-59 231.5 193 64.8
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 7.2e-59 231.1 194 63.4
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 2.7e-58 229.2 194 62.9
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 4.6e-58 228.4 194 64.9
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 4.6e-58 228.4 202 63.4
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 4.6e-58 228.4 196 64.3
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 6.1e-58 228.0 194 64.4
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 7.9e-58 227.6 206 61.2
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 7.9e-58 227.6 194 63.4
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 1.0e-57 227.3 194 62.4
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 1.0e-57 227.3 194 63.4
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 1.8e-57 226.5 194 62.4
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 3.0e-57 225.7 196 62.8
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 3.9e-57 225.3 194 62.9
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 3.9e-57 225.3 194 63.4
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 3.9e-57 225.3 194 62.4
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 3.9e-57 225.3 189 64.6
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 3.9e-57 225.3 194 62.4
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 5.1e-57 224.9 194 62.4
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 5.1e-57 224.9 194 61.9
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 6.7e-57 224.6 189 65.1
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 8.8e-57 224.2 194 62.4
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 8.8e-57 224.2 196 62.2
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 1.1e-56 223.8 189 65.6
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.5e-56 223.4 195 63.6
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.9e-56 223.0 193 61.1
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 1.9e-56 223.0 196 61.2
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 2.5e-56 222.6 194 62.9
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 5.7e-56 221.5 195 63.1
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 5.7e-56 221.5 195 62.6
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 5.7e-56 221.5 195 61.5
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 7.4e-56 221.1 195 60.0
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 7.4e-56 221.1 194 62.9
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 7.4e-56 221.1 194 61.3
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 1.3e-55 220.3 194 63.4
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.3e-55 220.3 196 61.2
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 2.2e-55 219.5 194 63.4
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 2.8e-55 219.2 194 59.8
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 3.7e-55 218.8 194 62.9
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 3.7e-55 218.8 205 60.5
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 4.8e-55 218.4 194 60.8
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 4.8e-55 218.4 196 62.8
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 6.3e-55 218.0 194 60.8
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 6.3e-55 218.0 194 59.3
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 6.3e-55 218.0 196 61.2
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 1.1e-54 217.2 194 60.8
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.4e-54 216.9 194 59.8
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.4e-54 216.9 194 62.4
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 1.8e-54 216.5 195 62.1
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.4e-54 216.1 194 60.3
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.4e-54 216.1 194 60.3
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 3.1e-54 215.7 194 60.3
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 1.5e-53 213.4 194 59.8
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 1.5e-53 213.4 190 61.1
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 2.0e-53 213.0 195 57.9
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 2.0e-53 213.0 194 60.3
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.0e-53 213.0 225 55.6
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 3.4e-53 212.2 194 59.8
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 3.4e-53 212.2 194 59.8
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 4.5e-53 211.8 198 57.1
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 5.9e-53 211.5 200 57.5
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.2e-52 209.5 192 58.3
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.6e-50 203.4 194 56.2
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 2.7e-50 202.6 194 56.7
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 2.7e-50 202.6 238 51.3
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 4.7e-50 201.8 194 57.2
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 7.9e-50 201.1 194 57.2
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 8.8e-49 197.6 191 59.2
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.0e-48 196.4 215 51.6
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 2.6e-48 196.1 196 57.7
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 2.2e-47 193.0 144 71.5
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 1.1e-46 190.7 144 70.1
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.1e-46 189.1 216 51.4
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 5.9e-45 184.9 225 49.3
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 3.8e-44 182.2 191 54.5
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 8.0e-42 174.5 141 63.8
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 3.0e-41 172.6 141 63.8
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 3.3e-40 169.1 195 47.7
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 2.8e-39 166.0 136 63.2
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 8.2e-39 164.5 181 49.2
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 3.8e-36 155.6 198 44.4
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 5.5e-35 151.8 132 62.1
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 1.2e-34 150.6 196 44.4
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 1.2e-34 150.6 122 64.8
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.7e-34 148.7 191 51.8
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 3.3e-32 142.5 191 44.5
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 9.1e-30 134.4 116 61.2
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 3.5e-29 132.5 114 60.5
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 3.8e-28 129.0 185 41.6
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 4.2e-27 125.6 121 57.9
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 9.4e-27 124.4 78 76.9
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.7e-26 122.9 138 50.7
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 5.2e-25 118.6 93 71.0
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 1.2e-24 117.5 138 50.0
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 1.2e-24 117.5 138 50.0
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 2.2e-23 113.2 105 57.1
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 7.5e-16 88.2 45 86.7
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 2.5e-11 73.2 64 60.9
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 2.1e-10 70.1 73 52.1
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 3.4e-08 62.8 32 90.6
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 2.9e-07 59.7 32 84.4
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 2.9e-07 59.7 45 64.4


User provided reference genes

Program Settings