Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 2.6e-146 522.3 318 100.0
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 5.3e-59 232.3 301 58.5
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 7.2e-56 221.9 166 72.3
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.6e-55 220.7 166 71.7
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 8.8e-54 214.9 303 48.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 8.8e-54 214.9 178 65.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.8e-51 207.2 162 66.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.8e-51 207.2 175 61.7
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.4e-51 206.8 166 64.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 3.1e-51 206.5 181 61.9
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 4.1e-51 206.1 164 65.9
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 5.3e-51 205.7 168 62.5
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 5.3e-51 205.7 180 61.7
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 9.1e-51 204.9 194 56.2
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.2e-50 204.5 177 61.6
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.0e-49 201.4 169 60.9
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.0e-49 201.4 168 62.5
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 1.0e-49 201.4 181 61.3
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.3e-49 201.1 176 62.5
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.7e-49 200.7 196 57.7
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.7e-49 200.7 159 65.4
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.2e-49 200.3 176 61.9
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 2.9e-49 199.9 167 64.1
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 2.9e-49 199.9 176 61.4
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.8e-49 199.5 191 60.2
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.8e-49 199.5 176 60.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 3.8e-49 199.5 169 61.5
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.8e-49 199.5 159 64.8
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 6.5e-49 198.7 168 61.3
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 8.5e-49 198.4 175 61.1
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 8.5e-49 198.4 180 60.0
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.1e-48 198.0 168 60.7
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-48 198.0 168 60.7
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 1.5e-48 197.6 180 60.0
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.5e-48 197.6 176 61.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.5e-48 197.6 183 58.5
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 1.5e-48 197.6 182 58.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 1.5e-48 197.6 167 61.1
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 1.5e-48 197.6 180 57.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.9e-48 197.2 169 60.9
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.9e-48 197.2 177 59.3
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.2e-48 196.4 170 60.6
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 4.2e-48 196.1 190 60.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 4.2e-48 196.1 177 58.8
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 4.2e-48 196.1 164 64.0
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 5.5e-48 195.7 192 55.7
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 7.2e-48 195.3 159 64.2
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 7.2e-48 195.3 180 58.3
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.2e-47 194.5 167 62.3
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.2e-47 194.5 192 55.2
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.6e-47 194.1 179 58.7
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 2.1e-47 193.7 175 60.6
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.1e-47 193.7 177 59.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 2.7e-47 193.4 166 62.0
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.7e-47 192.6 181 56.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 6.1e-47 192.2 169 59.8
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 8.0e-47 191.8 166 62.0
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 8.0e-47 191.8 166 62.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 8.0e-47 191.8 162 63.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.0e-46 191.4 166 60.2
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.4e-46 191.0 164 62.2
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-46 191.0 183 57.4
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.3e-46 190.3 178 59.0
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.3e-46 190.3 177 58.8
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 2.3e-46 190.3 173 60.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 4.0e-46 189.5 180 57.8
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 5.2e-46 189.1 167 59.9
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 8.8e-46 188.3 164 61.6
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 8.8e-46 188.3 162 61.1
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.2e-45 188.0 169 59.8
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 3.3e-45 186.4 180 56.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 4.4e-45 186.0 162 60.5
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.7e-45 185.7 162 58.0
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 5.7e-45 185.7 162 59.3
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 9.7e-45 184.9 179 57.0
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 9.7e-45 184.9 162 58.0
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 1.3e-44 184.5 166 57.8
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.2e-44 183.7 168 57.7
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.8e-44 183.3 183 53.6
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 2.8e-44 183.3 189 54.5
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 3.7e-44 183.0 178 57.9
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 6.3e-44 182.2 168 60.1
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 8.3e-44 181.8 167 58.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 8.3e-44 181.8 173 58.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.8e-43 180.6 182 57.7
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 2.4e-43 180.3 168 57.1
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 4.1e-43 179.5 175 59.4
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 5.3e-43 179.1 166 57.2
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 7.0e-43 178.7 167 59.3
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 9.1e-43 178.3 175 58.9
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 9.1e-43 178.3 163 57.7
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 9.1e-43 178.3 164 57.3
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-42 177.9 164 57.9
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-42 177.9 164 57.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.2e-42 177.9 164 58.5
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 5.9e-42 175.6 164 58.5
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.9e-42 175.6 166 58.4
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.1e-40 171.4 164 56.7
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 6.1e-39 165.6 160 54.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 3.0e-38 163.3 165 53.9
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 8.8e-38 161.8 165 53.3
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.5e-37 161.0 165 52.7
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.5e-37 158.7 179 52.0
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.7e-36 156.4 165 52.1
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.5e-32 142.5 197 46.2
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.1e-31 139.0 175 39.4
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 8.0e-31 138.7 179 42.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.0e-30 138.3 171 40.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.8e-30 137.5 178 42.7
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 6.3e-28 129.0 111 57.7
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.4e-27 127.1 184 46.2
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 7.8e-26 122.1 162 47.5
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.7e-25 120.9 123 50.4
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.1e-24 118.2 181 40.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.3e-24 116.7 140 41.4
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 4.7e-23 112.8 183 41.0
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-20 104.0 108 50.0
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.7e-20 103.2 176 42.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 6.4e-20 102.4 106 47.2
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 1.7e-17 94.4 83 59.0
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 6.2e-15 85.9 83 51.8
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 5.8e-13 79.3 76 59.2
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.7e-12 77.8 98 48.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 8.3e-12 75.5 56 71.4
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.9e-11 74.3 72 50.0
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 7.0e-11 72.4 54 64.8
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 7.0e-11 72.4 61 62.3
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 3.0e-09 67.0 67 46.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.2e-07 61.6 125 31.2
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 4.0e-06 56.6 81 35.8
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 5.2e-06 56.2 38 68.4


User provided reference genes

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