Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 3.8e-202 708.0 362 100.0
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 2.7e-91 339.7 405 52.6
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 7.1e-84 315.1 360 49.7
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 8.7e-82 308.1 362 49.7
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 8.4e-77 291.6 362 46.7
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 1.9e-73 280.4 362 46.7
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.3e-72 277.7 330 48.8
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 4.8e-72 275.8 363 46.3
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 8.2e-72 275.0 346 46.2
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.8e-71 273.9 362 44.5
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 6.9e-71 271.9 368 47.3
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 6.9e-71 271.9 362 44.2
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 1.2e-70 271.2 346 45.4
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 5.8e-70 268.9 329 45.6
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.3e-69 267.7 329 46.2
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 1.7e-69 267.3 341 46.0
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 1.7e-69 267.3 363 43.8
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 1.7e-69 267.3 329 45.6
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 3.8e-69 266.2 365 45.8
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 6.5e-69 265.4 327 46.2
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 6.5e-69 265.4 365 45.8
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 1.1e-68 264.6 343 49.0
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 1.1e-68 264.6 329 46.2
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 1.9e-68 263.8 362 42.5
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 1.9e-68 263.8 362 42.5
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 2.5e-68 263.5 362 42.5
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 3.2e-68 263.1 362 45.3
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 3.2e-68 263.1 362 43.4
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 4.2e-68 262.7 364 45.6
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.2e-67 261.2 362 43.6
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 1.6e-67 260.8 350 45.1
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 2.1e-67 260.4 330 44.5
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 2.7e-67 260.0 362 43.6
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 3.5e-67 259.6 361 44.9
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 3.5e-67 259.6 362 43.4
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 3.5e-67 259.6 361 46.0
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 6.0e-67 258.8 341 43.7
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 7.9e-67 258.5 362 43.6
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.0e-66 258.1 362 44.2
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 1.0e-66 258.1 362 43.9
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.0e-66 258.1 362 43.6
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.3e-66 257.7 310 45.8
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 1.3e-66 257.7 363 43.8
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.8e-66 257.3 363 43.3
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.8e-66 257.3 364 44.8
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.8e-66 257.3 331 46.2
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 2.3e-66 256.9 362 43.4
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 3.0e-66 256.5 329 45.0
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 8.7e-66 255.0 360 43.3
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 1.1e-65 254.6 363 42.7
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 2.5e-65 253.4 363 43.8
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 2.5e-65 253.4 385 42.3
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 2.5e-65 253.4 362 43.9
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 3.3e-65 253.1 350 43.1
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 4.3e-65 252.7 362 43.1
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 5.7e-65 252.3 362 42.8
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 1.3e-64 251.1 367 42.0
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 2.2e-64 250.4 361 42.7
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 2.8e-64 250.0 331 43.8
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 6.3e-64 248.8 362 43.6
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 1.1e-63 248.1 364 42.6
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 1.1e-63 248.1 362 43.4
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.4e-63 247.7 365 41.1
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.4e-63 246.9 350 42.3
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 2.4e-63 246.9 304 46.7
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 3.1e-63 246.5 360 44.2
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 4.1e-63 246.1 333 43.8
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 6.9e-63 245.4 362 41.7
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 1.5e-62 244.2 362 41.7
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 2.0e-62 243.8 364 41.5
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.6e-62 243.4 364 41.5
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 4.5e-62 242.7 364 41.2
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 7.6e-62 241.9 360 42.2
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.3e-61 241.1 346 42.2
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 1.7e-61 240.7 347 43.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 2.2e-61 240.4 350 41.1
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 5.0e-61 239.2 340 42.1
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 5.0e-61 239.2 330 43.0
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.1e-60 238.0 361 43.5
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 2.5e-60 236.9 304 44.1
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 5.5e-60 235.7 332 42.8
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.5e-60 235.7 357 40.9
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.2e-59 234.6 374 40.6
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 1.2e-59 234.6 330 43.9
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.1e-59 233.8 371 39.9
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 3.6e-59 233.0 366 41.5
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 4.6e-59 232.6 302 43.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 6.1e-59 232.3 305 43.3
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 1.8e-58 230.7 302 43.4
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 2.3e-58 230.3 365 40.8
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 5.1e-58 229.2 302 43.0
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 8.8e-58 228.4 302 43.0
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.1e-57 228.0 321 41.1
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 1.5e-57 227.6 302 42.7
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.9e-57 227.3 350 40.6
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 1.9e-57 227.3 321 40.8
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 4.3e-57 226.1 363 40.5
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 5.7e-57 225.7 332 41.6
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 5.7e-57 225.7 332 41.6
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 7.4e-57 225.3 332 41.9
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 9.7e-57 224.9 332 41.6
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 2.8e-56 223.4 346 40.5
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 8.2e-56 221.9 318 41.2
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 9.1e-55 218.4 253 48.2
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.2e-54 218.0 362 38.4
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 1.2e-54 218.0 362 39.5
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 2.0e-54 217.2 321 39.9
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 1.7e-53 214.2 187 56.7
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 2.2e-53 213.8 362 38.4
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 5.5e-52 209.1 305 39.3
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 5.5e-52 209.1 204 53.4
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 5.5e-52 209.1 251 47.4
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 4.7e-51 206.1 298 41.6
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 4.7e-51 206.1 176 60.8
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 4.4e-49 199.5 207 52.7
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 8.2e-48 195.3 345 35.4
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 2.2e-45 187.2 304 35.2
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.9e-44 184.1 298 35.2
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 3.2e-44 183.3 304 34.9
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 4.1e-39 166.4 298 34.9
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 4.2e-36 156.4 298 34.6
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 1.6e-35 154.5 99 67.7
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 4.7e-35 152.9 173 50.3
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 4.7e-27 126.3 194 40.2
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 6.8e-26 122.5 217 33.6
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 3.7e-24 116.7 194 37.6
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 9.5e-20 102.1 104 54.8
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 6.6e-13 79.3 50 76.0
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 2.3e-10 70.9 37 89.2
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 2.0e-09 67.8 252 24.6
SEGI_12906 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 1.2e-06 58.5 34 76.5


User provided reference genes

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