Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.2e-91 339.0 170 100.0
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.8e-91 338.6 170 99.4
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 3.6e-86 321.6 170 94.1
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 3.0e-85 318.5 170 92.4
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 3.9e-85 318.2 170 92.4
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.8e-83 312.0 216 77.3
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 8.2e-83 310.5 168 90.5
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 1.4e-82 309.7 170 89.4
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 7.0e-82 307.4 166 91.0
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 7.0e-82 307.4 168 91.1
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 9.1e-82 307.0 168 88.7
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 9.1e-82 307.0 168 90.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.6e-81 305.4 168 89.9
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 3.5e-81 305.1 168 89.9
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 3.5e-81 305.1 168 89.3
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 4.5e-81 304.7 167 89.2
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 5.9e-81 304.3 168 87.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.9e-81 304.3 168 88.1
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.9e-81 304.3 168 88.1
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.3e-80 303.1 168 88.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 2.9e-80 302.0 168 86.9
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 5.0e-80 301.2 168 88.1
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 5.0e-80 301.2 168 87.5
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 6.5e-80 300.8 168 87.5
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.5e-80 300.8 168 87.5
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 6.5e-80 300.8 168 87.5
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 8.5e-80 300.4 168 88.1
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-79 299.7 165 87.3
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 1.5e-79 299.7 168 87.5
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.9e-79 299.3 168 86.3
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 1.9e-79 299.3 168 86.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 3.2e-79 298.5 168 88.7
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 3.2e-79 298.5 166 86.7
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.2e-79 298.5 168 86.3
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 3.2e-79 298.5 167 88.6
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 4.2e-79 298.1 167 86.8
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 5.5e-79 297.7 168 86.9
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.1e-78 295.8 165 87.9
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-78 295.8 165 87.9
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.1e-78 295.8 165 87.9
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.1e-78 295.8 165 87.9
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 3.6e-78 295.0 168 85.1
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.6e-78 295.0 165 87.9
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 4.7e-78 294.7 241 68.0
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 6.1e-78 294.3 168 86.3
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 6.1e-78 294.3 168 85.7
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.0e-77 293.5 168 86.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.8e-77 292.7 168 85.1
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 2.3e-77 292.4 168 85.7
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 2.3e-77 292.4 168 83.3
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.0e-77 291.6 168 82.7
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 6.7e-77 290.8 185 79.5
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.1e-76 290.0 168 85.7
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-76 290.0 165 84.2
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 1.5e-76 289.7 171 86.0
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 3.3e-76 288.5 168 85.1
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 3.3e-76 288.5 181 79.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 4.4e-76 288.1 168 82.7
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 5.7e-76 287.7 165 84.2
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.7e-76 287.7 206 72.8
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 7.5e-76 287.3 168 82.1
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 7.5e-76 287.3 168 86.9
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 1.3e-75 286.6 168 82.1
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 1.3e-75 286.6 168 82.1
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.3e-75 286.6 191 76.4
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 1.3e-75 286.6 168 82.1
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.8e-75 284.6 168 83.9
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-74 283.5 168 82.7
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.1e-74 283.5 168 82.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.1e-74 283.5 182 79.1
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.1e-74 283.5 168 82.7
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.1e-74 283.5 168 83.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-74 283.1 182 79.1
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.4e-74 283.1 182 79.1
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 1.8e-74 282.7 168 81.5
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 5.3e-74 281.2 168 81.5
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 9.1e-74 280.4 168 81.5
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.6e-73 279.6 168 80.4
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 2.0e-73 279.3 165 80.6
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.7e-73 278.9 168 81.5
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.5e-73 278.5 166 81.9
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.5e-73 278.5 165 80.6
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 3.5e-73 278.5 225 66.7
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 3.5e-73 278.5 148 91.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 2.2e-72 275.8 168 78.0
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.9e-72 275.4 168 77.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 3.8e-72 275.0 148 89.2
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.8e-72 275.0 167 77.2
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.5e-72 274.2 171 82.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 8.5e-72 273.9 168 80.4
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 8.5e-72 273.9 153 88.9
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.2e-71 271.9 168 79.2
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 4.2e-71 271.6 148 88.5
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.5e-71 271.2 171 81.9
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.2e-71 270.8 168 78.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 9.4e-71 270.4 169 76.3
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.6e-70 269.6 154 83.8
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 4.7e-70 268.1 168 79.8
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 8.0e-70 267.3 169 78.1
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 1.0e-69 266.9 168 79.2
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 1.4e-69 266.5 166 78.9
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 2.3e-69 265.8 148 87.2
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 2.3e-69 265.8 168 78.6
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 4.0e-69 265.0 148 85.1
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 4.0e-69 265.0 168 73.2
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 4.0e-69 265.0 166 75.9
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 5.2e-69 264.6 144 88.2
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 6.8e-69 264.2 193 68.9
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.5e-68 263.1 149 83.9
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.4e-68 261.5 142 88.7
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 7.5e-68 260.8 147 84.4
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 6.3e-67 257.7 168 74.4
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.1e-66 255.4 149 82.6
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 1.6e-65 253.1 176 75.0
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.0e-64 248.1 167 73.1
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 2.1e-62 242.7 148 79.7
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 3.4e-60 235.3 156 76.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 4.4e-60 235.0 169 74.6
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 7.5e-60 234.2 123 88.6
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 7.5e-60 234.2 123 88.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 1.7e-59 233.0 148 77.0
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 6.3e-59 231.1 152 76.3
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 1.8e-58 229.6 148 75.7
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 2.4e-58 229.2 125 85.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.3e-56 222.6 124 90.3
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 8.6e-56 220.7 168 69.0
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 5.6e-55 218.0 165 69.1
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.6e-54 216.5 124 86.3
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.7e-54 214.9 124 88.7
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 6.1e-54 214.5 155 67.7
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-53 213.8 165 68.5
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 2.3e-53 212.6 132 79.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 5.2e-53 211.5 192 57.3
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 5.2e-53 211.5 121 86.0
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 6.8e-53 211.1 121 85.1
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 6.8e-53 211.1 121 85.1
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 1.5e-52 209.9 121 84.3
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 4.4e-52 208.4 123 83.7
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 7.5e-52 207.6 143 74.8
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.1e-50 203.8 147 72.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 7.8e-49 197.6 158 69.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.0e-48 194.9 134 68.7
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 2.4e-42 176.0 89 88.8
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 2.7e-41 172.6 106 82.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 4.3e-39 165.2 89 88.8
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.0e-37 158.7 94 87.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.3e-32 143.7 103 66.0
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.3e-32 143.7 83 88.0
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.1e-29 132.5 73 94.5
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.2e-28 130.6 100 64.0
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.5e-28 130.2 94 68.1
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.6e-25 118.6 82 70.7
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.0e-25 118.2 77 76.6
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 1.0e-24 117.5 103 61.2
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.1e-21 107.5 75 68.0
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.5e-20 103.6 74 67.6
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 3.8e-19 99.0 153 39.2
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 1.4e-18 97.1 130 41.5
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.4e-18 95.1 64 71.9
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.5e-17 92.4 46 91.3
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 7.8e-17 91.3 65 72.3
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.8e-14 82.0 49 83.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.8e-14 82.0 49 83.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 9.0e-13 77.8 111 48.6
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 3.4e-12 75.9 182 33.0
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.6e-09 67.0 37 78.4


User provided reference genes

Program Settings