Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0019900 Rhododendron simsii HOM05D055487 ORTHO05D338639 7.9e-145 517.3 305 100.0
Rhsim04G0020000 Rhododendron simsii HOM05D055487 ORTHO05D338746 1.7e-70 270.4 171 78.4
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 3.8e-14 83.2 68 66.2
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 3.8e-14 83.2 68 66.2
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 1.5e-13 81.3 68 63.2
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 5.5e-13 79.3 68 63.2
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 7.2e-13 79.0 61 68.9
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 7.2e-13 79.0 61 68.9
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 7.2e-13 79.0 61 68.9
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 7.2e-13 79.0 61 68.9
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 7.2e-13 79.0 68 63.2
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 7.2e-13 79.0 61 68.9
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 9.4e-13 78.6 61 67.2
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 9.4e-13 78.6 61 67.2
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 1.6e-12 77.8 61 67.2
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 2.7e-12 77.0 68 60.3
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 4.7e-12 76.3 61 65.6
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 4.7e-12 76.3 61 65.6
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 6.1e-12 75.9 61 63.9
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 6.1e-12 75.9 61 63.9
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 67.2
TAR626G1858 Trochodendron aralioides HOM05D003356 ORTHO05D004362 8.0e-12 75.5 61 65.6
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 8.0e-12 75.5 68 58.8
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.4e-11 74.7 68 60.3
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 1.4e-11 74.7 68 58.8
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 1.4e-11 74.7 68 58.8
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 1.4e-11 74.7 61 62.3
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.4e-11 74.7 68 58.8
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 1.4e-11 74.7 68 57.4
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 1.4e-11 74.7 68 58.8
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 1.8e-11 74.3 61 63.9
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 1.8e-11 74.3 61 63.9
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 1.8e-11 74.3 61 65.6
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 1.8e-11 74.3 61 63.9
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.3e-11 73.9 68 63.2
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 2.3e-11 73.9 61 65.6
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 3.0e-11 73.6 68 57.4
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 3.0e-11 73.6 61 65.6
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 3.0e-11 73.6 68 58.8
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 3.0e-11 73.6 61 60.7
HPP92_020871 Vanilla planifolia HOM05D003356 ORTHO05D004362 3.0e-11 73.6 68 57.4
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 4.0e-11 73.2 61 65.6
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 4.0e-11 73.2 61 63.9
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 5.2e-11 72.8 61 63.9
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 5.2e-11 72.8 61 63.9
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 5.2e-11 72.8 61 62.3
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 5.2e-11 72.8 61 63.9
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 5.2e-11 72.8 61 62.3
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 5.2e-11 72.8 61 62.3
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 6.8e-11 72.4 61 62.3
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 6.8e-11 72.4 61 63.9
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 6.8e-11 72.4 61 62.3
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 6.8e-11 72.4 61 62.3
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 8.8e-11 72.0 61 60.7
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 8.8e-11 72.0 61 62.3
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 8.8e-11 72.0 61 62.3
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 1.2e-10 71.6 61 63.9
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 1.2e-10 71.6 61 63.9
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 1.2e-10 71.6 61 62.3
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 1.2e-10 71.6 61 62.3
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 1.5e-10 71.2 61 63.9
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 1.5e-10 71.2 61 63.9
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 60.7
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 60.7
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 59.0
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 62.3
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 62.3
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 62.3
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 62.3
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 62.3
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 62.3
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 2.0e-10 70.9 61 59.0
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 60.7
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 60.7
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 62.3
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 62.3
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 59.0
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 60.7
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 60.7
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 63.9
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 2.6e-10 70.5 61 59.0
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 3.4e-10 70.1 68 55.9
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 3.4e-10 70.1 61 57.4
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 3.4e-10 70.1 61 62.3
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 4.4e-10 69.7 61 59.0
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 4.4e-10 69.7 61 62.3
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 4.4e-10 69.7 61 59.0
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 4.4e-10 69.7 61 60.7
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 5.7e-10 69.3 61 59.0
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 5.7e-10 69.3 61 57.4
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 7.5e-10 68.9 61 57.4
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 7.5e-10 68.9 61 57.4
Dinv08306 Davidia involucrata HOM05D003356 ORTHO05D004362 7.5e-10 68.9 61 62.3
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 7.5e-10 68.9 61 59.0
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 7.5e-10 68.9 61 59.0
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 7.5e-10 68.9 61 60.7
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 57.4
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 60.7
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 59.0
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 59.0
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 59.0
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 59.0
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 59.0
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 9.8e-10 68.6 61 59.0
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 59.0
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 57.4
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 57.4
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 57.4
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 59.0
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 59.0
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 59.0
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 57.4
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 57.4
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 1.3e-09 68.2 61 57.4
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 1.7e-09 67.8 61 62.3
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 1.7e-09 67.8 61 62.3
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 2.2e-09 67.4 61 59.0
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 2.2e-09 67.4 61 55.7
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 55.7
AL3G27910 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 55.7
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 57.4
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 57.4
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 57.4
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 57.4
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 59.0
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 59.0
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 2.8e-09 67.0 61 59.0
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 3.7e-09 66.6 95 41.1
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 4.8e-09 66.2 61 57.4
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 8.3e-09 65.5 61 55.7
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 1.1e-08 65.1 61 60.7
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 1.4e-08 64.7 61 57.4
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 1.4e-08 64.7 61 59.0
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.8e-08 64.3 61 57.4
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 2.4e-08 63.9 61 57.4
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 2.4e-08 63.9 61 54.1
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 2.4e-08 63.9 62 59.7
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 7.0e-08 62.4 61 55.7
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 7.0e-08 62.4 61 55.7
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 4.5e-07 59.7 61 52.5
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 2.3e-06 57.4 61 47.5


User provided reference genes

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