Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0001600 Rhododendron simsii HOM05D005148 ORTHO05D006218 2.8e-148 528.9 323 100.0
Rhsim04G0000500 Rhododendron simsii HOM05D005148 ORTHO05D006218 1.6e-124 449.9 341 86.5
Dinv22285 Davidia involucrata HOM05D005148 ORTHO05D006218 1.0e-86 324.3 342 61.4
CSS0036538 Camellia sinensis var. sinensis HOM05D005148 ORTHO05D006218 1.5e-85 320.5 341 65.1
vmacro09737 Vaccinium macrocarpon HOM05D005148 ORTHO05D006218 8.0e-79 298.1 338 60.4
Gohir.A13G139300 Gossypium hirsutum HOM05D005148 ORTHO05D006218 9.8e-77 291.2 370 54.6
CAN.G1781.10 Capsicum annuum HOM05D005148 ORTHO05D006218 1.2e-74 284.3 279 58.8
Hma1.2p1_0938F.1_g239180 Hydrangea macrophylla HOM05D005148 ORTHO05D006218 5.6e-72 275.4 370 54.6
Sopen10g002340 Solanum pennellii HOM05D005148 ORTHO05D006218 1.1e-70 271.2 279 58.4
PGSC0003DMG400014426 Solanum tuberosum HOM05D005148 ORTHO05D006218 5.2e-70 268.9 279 58.4
Duzib268G1307 Durio zibethinus HOM05D005148 ORTHO05D006218 4.4e-69 265.8 289 56.7
Migut.H01845 Erythranthe guttata HOM05D005148 ORTHO05D006218 1.3e-68 264.2 280 59.6
TAR626G1940 Trochodendron aralioides HOM05D005148 ORTHO05D006218 1.7e-68 263.8 300 55.7
Nn1g07082 Nelumbo nucifera HOM05D005148 ORTHO05D006218 2.2e-68 263.5 282 58.2
Solyc10g006390.3 Solanum lycopersicum HOM05D005148 ORTHO05D006218 2.9e-68 263.1 279 57.3
Nitab4.5_0005048g0010 Nicotiana tabacum HOM05D005148 ORTHO05D006218 8.3e-68 261.5 358 47.5
Thecc.07G044600 Theobroma cacao HOM05D005148 ORTHO05D006218 1.4e-67 260.8 284 56.3
MD03G1208700 Malus domestica HOM05D005148 ORTHO05D006218 1.9e-67 260.4 294 54.1
Prupe.4G208000 Prunus persica HOM05D005148 ORTHO05D006218 1.2e-66 257.7 431 42.2
MD11G1223400 Malus domestica HOM05D005148 ORTHO05D006218 1.6e-66 257.3 279 55.9
Duzib213G0030 Durio zibethinus HOM05D005148 ORTHO05D006218 2.0e-66 256.9 370 54.1
Cc05_g13470 Coffea canephora HOM05D005148 ORTHO05D006218 6.0e-66 255.4 275 56.0
Sed0006852 Sechium edule HOM05D005148 ORTHO05D006218 7.8e-66 255.0 351 55.6
Nitab4.5_0001393g0210 Nicotiana tabacum HOM05D005148 ORTHO05D006218 3.3e-64 249.6 279 57.3
QL06p002269 Quercus lobata HOM05D005148 ORTHO05D006218 1.2e-63 247.7 243 60.1
ATR0752G127 Amborella trichopoda HOM05D005148 ORTHO05D006218 4.0e-62 242.7 265 55.8
CsaV3_3G023250 Cucumis sativus L. HOM05D005148 ORTHO05D006218 8.9e-62 241.5 278 56.8
HanXRQChr08g0235221 Helianthus annuus HOM05D005148 ORTHO05D006218 8.9e-62 241.5 298 53.0
ClCG05G014480 Citrullus lanatus HOM05D005148 ORTHO05D006218 1.2e-58 231.1 392 51.0
ECA246G0930 Erigeron canadensis HOM05D005148 ORTHO05D006218 1.6e-58 230.7 311 48.9
RcHm_v2.0_Chr5g0037921 Rosa chinensis HOM05D005148 ORTHO05D006218 2.1e-58 230.3 427 43.8
CiPaw.11G186500 Carya illinoinensis HOM05D005148 ORTHO05D006218 2.7e-58 229.9 212 61.3
FvH4_3g22101 Fragaria vesca HOM05D005148 ORTHO05D006218 2.7e-58 229.9 285 51.9
FAN16G3277 Fragaria x ananassa HOM05D005148 ORTHO05D006218 2.7e-58 229.9 287 52.3
FAN21G2996 Fragaria x ananassa HOM05D005148 ORTHO05D006218 3.5e-58 229.6 287 52.3
MSTRG.12962 Avicennia marina HOM05D005148 ORTHO05D006218 3.9e-57 226.1 255 54.1
SGA_v2.0_scaffold115G32129 Striga asiatica HOM05D005148 ORTHO05D006218 5.1e-57 225.7 313 48.9
unitig_22.g5751 Utricularia gibba HOM05D005148 ORTHO05D006218 1.5e-56 224.2 254 53.9
Psat5g183400 Pisum sativum HOM05D005148 ORTHO05D006218 1.9e-56 223.8 292 50.7
RcHm_v2.0_Chr4g0405041 Rosa chinensis HOM05D005148 ORTHO05D006218 2.5e-56 223.4 279 51.3
Ca_14709_v3 Cicer arietinum L. HOM05D005148 ORTHO05D006218 4.3e-56 222.6 287 53.3
Eucgr.F00968 Eucalyptus grandis HOM05D005148 ORTHO05D006218 1.6e-55 220.7 348 50.0
Haze_06035 Corylus avellana HOM05D001748 ORTHO05D006218 3.6e-55 219.5 207 59.4
FAN11G3177 Fragaria x ananassa HOM05D005148 ORTHO05D006218 3.6e-55 219.5 295 49.2
HPP92_019925 Vanilla planifolia HOM05D005148 ORTHO05D006218 6.2e-55 218.8 283 52.3
Ciclev10008061m.g Citrus clementina HOM05D005148 ORTHO05D006218 1.8e-54 217.2 251 55.8
COL.COLO4_09623 Corchorus olitorius HOM05D005148 ORTHO05D006218 3.1e-54 216.5 384 42.7
CDE05G0897 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 8.9e-54 214.9 307 46.9
Gohir.D13G144100 Gossypium hirsutum HOM05D005148 ORTHO05D006218 8.9e-54 214.9 330 49.1
GSVIVG01030604001 Vitis vinifera HOM05D005148 ORTHO05D006218 1.2e-53 214.5 289 50.9
Gorai.013G161200 Gossypium raimondii HOM05D005148 ORTHO05D006218 1.5e-53 214.2 330 50.0
Manes.03G127500 Manihot esculenta HOM05D005148 ORTHO05D006218 1.5e-53 214.2 182 65.4
Atru.chr2.3757 Acer truncatum HOM05D005148 ORTHO05D006218 2.0e-53 213.8 254 50.8
Lsat_1_v5_gn_5_13800 Lactuca sativa HOM05D005148 ORTHO05D006218 2.6e-53 213.4 364 44.0
PGR042G3618 Punica granatum HOM05D005148 ORTHO05D006218 2.6e-53 213.4 280 51.1
Atru.chr2.3744 Acer truncatum HOM05D005148 ORTHO05D006218 3.4e-53 213.0 257 51.0
Cfa020393 Carpinus fangiana HOM05D001748 ORTHO05D001759 3.4e-53 213.0 212 57.1
Dinv40732 Davidia involucrata HOM05D005148 ORTHO05D006218 3.4e-53 213.0 304 57.6
CANSAT54G0232 Cannabis sativa HOM05D005148 ORTHO05D006218 9.9e-53 211.5 428 41.6
QL03p062207 Quercus lobata HOM05D005148 ORTHO05D006218 9.9e-53 211.5 448 40.8
QL03p062820 Quercus lobata HOM05D005148 ORTHO05D006218 9.9e-53 211.5 448 40.8
Sc03g0008800 Simmondsia chinensis HOM05D005148 ORTHO05D006218 1.3e-52 211.1 233 57.9
arahy.Tifrunner.gnm1.ann1.ICWX02 Arachis hypogaea HOM05D005148 ORTHO05D006218 4.9e-52 209.1 202 58.9
arahy.Tifrunner.gnm1.ann1.XKJ78D Arachis hypogaea HOM05D005148 ORTHO05D006218 4.9e-52 209.1 202 58.9
AUR62021649 Chenopodium quinoa HOM05D005148 ORTHO05D006218 8.4e-52 208.4 189 60.8
AL3G34380 Arabidopsis lyrata HOM05D005148 ORTHO05D006218 1.1e-51 208.0 296 51.4
Cpa.g.sc97.43 Carica papaya HOM05D005148 ORTHO05D006218 1.1e-51 208.0 186 61.8
QL08p012200 Quercus lobata HOM05D005148 ORTHO05D006218 1.9e-51 207.2 165 66.1
Phvul.006G037500 Phaseolus vulgaris HOM05D005148 ORTHO05D006218 4.1e-51 206.1 293 47.8
Zm00001eb286040 Zea mays HOM05D005148 ORTHO05D006218 7.1e-51 205.3 258 52.3
Glyma.18G102900 Glycine max HOM05D005148 ORTHO05D006218 1.6e-50 204.1 377 43.2
VMungo0540G1829 Vigna mungo HOM05D005148 ORTHO05D006218 2.7e-50 203.4 302 47.7
Lalb_Chr20g0114191 Lupinus albus HOM05D005148 ORTHO05D006218 3.5e-50 203.0 226 55.8
EL10Ac4g07904 Beta vulgaris HOM05D005148 ORTHO05D006218 1.7e-49 200.7 172 61.6
DCAR_019897 Daucus carota HOM05D005148 ORTHO05D006218 1.7e-49 200.7 336 43.8
Potri.001G420400 Populus trichocarpa HOM05D005148 ORTHO05D006218 2.3e-49 200.3 311 47.9
Lj6g0026690 Lotus japonicus HOM05D005148 ORTHO05D006218 5.1e-49 199.1 174 63.2
Ah.04g165650 Amaranthus hybridus HOM05D001748 ORTHO05D001759 1.1e-48 198.0 296 50.0
Actinidia10719 Actinidia chinensis HOM05D005148 ORTHO05D006218 7.3e-48 195.3 218 73.4
Os05g0545600 Oryza sativa ssp. japonica HOM05D005148 ORTHO05D006218 9.6e-48 194.9 218 57.8
Atru.chr2.3269 Acer truncatum HOM05D005148 ORTHO05D006218 1.2e-47 194.5 163 63.2
Medtr3g049440 Medicago truncatula HOM05D005148 ORTHO05D006218 2.1e-47 193.7 218 51.8
AUR62008441 Chenopodium quinoa HOM05D005148 ORTHO05D006218 2.8e-47 193.4 277 48.7
Carub.0003s2052 Capsella rubella HOM05D005148 ORTHO05D006218 3.6e-47 193.0 308 43.5
CDE02G2943 Ceratophyllum demersum HOM05D005148 ORTHO05D006218 2.4e-46 190.3 345 43.5
PSO675G4432 Papaver somniferum HOM05D005148 ORTHO05D006218 2.4e-46 190.3 177 61.0
Glyma.09G101200 Glycine max HOM05D005148 ORTHO05D006218 1.5e-45 187.6 385 39.0
Nn1g03595 Nelumbo nucifera HOM05D005148 ORTHO05D006218 7.6e-45 185.3 241 52.7
TWI38G1498 Tripterygium wilfordii HOM05D005148 ORTHO05D006218 2.2e-44 183.7 321 54.2
Oeu007601.1 Olea europaea HOM05D005148 ORTHO05D006218 2.9e-44 183.3 322 43.2
TPR.G13552 Trifolium pratense HOM05D005148 ORTHO05D006218 1.1e-43 181.4 165 60.0
CARHR096320 Cardamine hirsuta HOM05D005148 ORTHO05D006218 5.4e-43 179.1 322 40.7
SEGI_03914 Sequoiadendron giganteum HOM05D005148 ORTHO05D006218 5.4e-43 179.1 296 43.2
PSO541G0017 Papaver somniferum HOM05D005148 ORTHO05D006218 1.2e-42 177.9 310 43.2
AT3G20550 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 1.6e-42 177.6 169 57.4
Hund14204 Selenicereus undatus HOM05D005148 ORTHO05D006218 2.1e-42 177.2 162 59.9
BcaB04g19113 Brassica carinata HOM05D005148 ORTHO05D006218 3.5e-42 176.4 301 42.9
C03p51180 Brassica napus HOM05D005148 ORTHO05D006218 2.3e-41 173.7 354 39.8
BcaC01g03550 Brassica carinata HOM05D005148 ORTHO05D006218 3.9e-41 172.9 364 39.8
BraA03t13333Z Brassica rapa HOM05D005148 ORTHO05D006218 3.9e-41 172.9 291 42.6
BolC3t17407H Brassica oleracea HOM05D005148 ORTHO05D006218 1.1e-40 171.4 358 39.9
Peaxi162Scf00032g02417 Petunia axillaris HOM05D005148 ORTHO05D006218 1.5e-40 171.0 293 42.3
Sp3g18560 Schrenkiella parvula HOM05D005148 ORTHO05D006218 1.9e-40 170.6 377 38.2
EL10Ac5g11049 Beta vulgaris HOM05D005148 ORTHO05D006218 5.6e-40 169.1 354 41.2
Aa31LG8G7350 Aethionema arabicum HOM05D005148 ORTHO05D006218 1.3e-39 167.9 389 36.8
Medtr5g081620 Medicago truncatula HOM05D005148 ORTHO05D006218 1.6e-39 167.5 149 61.1
A03p41800 Brassica napus HOM05D005148 ORTHO05D006218 3.6e-39 166.4 290 42.4
Sabra16G0285400 Salix brachista HOM05D005148 ORTHO05D006218 4.8e-39 166.0 149 63.1
CBR_g38419 Chara braunii HOM05D005148 ORTHO05D006218 1.4e-38 164.5 163 56.4
Mapoly0068s0031 Marchantia polymorpha HOM05D005148 ORTHO05D006218 1.4e-38 164.5 331 40.2
Aqoxy5G02091 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 9.0e-38 161.8 228 48.7
Haze_09643 Corylus avellana HOM05D005148 ORTHO05D006218 1.5e-37 161.0 125 68.8
AagrBONN_evm.TU.Sc2ySwM_362.1748 Anthoceros agrestis HOM05D005148 ORTHO05D006218 4.5e-37 159.5 238 43.7
Potri.011G136102 Populus trichocarpa HOM05D005148 ORTHO05D006218 3.8e-36 156.4 274 44.5
Aqoxy3G00120 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 8.4e-36 155.2 172 55.8
Aqoxy1G03309 Aquilegia oxysepala HOM05D005148 ORTHO05D006218 1.1e-35 154.8 172 55.8
Pp3c19_14080 Physcomitrium patens HOM05D005148 ORTHO05D006218 2.4e-35 153.7 164 52.4
FAN05G2630 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.0e-33 148.3 155 52.9
FAN09G4771 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.3e-33 147.9 160 52.5
FvH4_6g43590 Fragaria vesca HOM05D005148 ORTHO05D006218 3.9e-33 146.4 160 50.6
SalBow7G4088 Salvia bowleyana HOM05D005148 ORTHO05D006218 5.1e-33 146.0 219 49.3
FAN14G1203 Fragaria x ananassa HOM05D005148 ORTHO05D006218 1.5e-32 144.4 151 51.0
MELO3C018081.2 Cucumis melo HOM05D005148 ORTHO05D006218 7.6e-29 132.1 82 78.0
Manes.15G074502 Manihot esculenta HOM05D005148 ORTHO05D006218 1.6e-26 124.4 206 45.1
Actinidia10720 Actinidia chinensis HOM05D005148 ORTHO05D006218 6.2e-23 112.5 108 57.4
SMO367G0870 Selaginella moellendorffii HOM05D005148 ORTHO05D006218 6.9e-22 109.0 148 44.6
MCO09G834 Micromonas commoda HOM05D005148 ORTHO05D006218 9.0e-22 108.6 147 40.8
Cre09.g390430 Chlamydomonas reinhardtii HOM05D005148 ORTHO05D006218 3.8e-20 103.2 165 38.8
TPR.G40522 Trifolium pratense HOM05D005148 ORTHO05D006218 3.2e-19 100.1 54 85.2
Haze_09642 Corylus avellana HOM05D005148 ORTHO05D006218 2.7e-18 97.1 56 76.8
TPR.G13540 Trifolium pratense HOM05D005148 ORTHO05D006218 2.7e-18 97.1 50 88.0
MELO3C030736.2 Cucumis melo HOM05D005148 ORTHO05D006218 8.7e-17 92.0 54 74.1
PRCOL_00003554 Prasinoderma coloniale HOM05D005148 ORTHO05D006218 1.1e-16 91.7 158 36.7
MD06G1125500 Malus domestica HOM05D005148 ORTHO05D006218 9.7e-16 88.6 135 39.3
RcHm_v2.0_Chr2g0160171 Rosa chinensis HOM05D005148 ORTHO05D006218 3.4e-13 80.1 64 60.9
Cfa025954 Carpinus fangiana HOM05D005148 ORTHO05D006218 1.1e-11 75.1 164 34.8
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 1.1e-11 75.1 140 41.4
Thhalv10024125m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 3.6e-10 70.1 54 59.3
Thhalv10011119m.g Eutrema salsugineum HOM05D005148 ORTHO05D006218 7.9e-10 68.9 54 59.3
PSO017G2282 Papaver somniferum HOM05D005148 ORTHO05D006218 2.3e-09 67.4 53 52.8
Lsat_1_v5_gn_5_38280 Lactuca sativa HOM05D005148 ORTHO05D006218 6.7e-09 65.9 48 62.5
AT2G24410 Arabidopsis thaliana HOM05D005148 ORTHO05D006218 3.3e-08 63.5 45 68.9
Glyma.18G276300 Glycine max HOM05D005170 ORTHO05D006985 5.3e-06 56.2 111 29.7
Nitab4.5_0005243g0020 Nicotiana tabacum HOM05D001732 ORTHO05D006715 6.9e-06 55.8 109 43.1


User provided reference genes

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