Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 5.7e-305 1050.0 511 100.0
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 4.5e-177 625.2 434 74.7
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.0e-160 569.3 436 67.9
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 1.1e-154 550.8 433 65.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.8e-141 506.9 449 61.9
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 4.6e-137 492.3 401 61.8
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.9e-135 486.9 397 61.7
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 1.9e-135 486.9 419 58.5
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 2.4e-133 479.9 399 61.4
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 6.9e-133 478.4 448 57.4
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 5.8e-132 475.3 445 57.1
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 1.4e-130 470.7 432 57.9
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.9e-130 470.3 386 60.1
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.4e-130 469.9 441 56.7
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 6.0e-129 465.3 433 55.9
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 7.8e-129 464.9 429 54.8
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 1.7e-128 463.8 378 60.8
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 3.0e-128 463.0 435 56.6
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 3.9e-128 462.6 429 57.6
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.1e-127 461.1 380 60.5
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.5e-127 460.7 434 55.5
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 3.3e-127 459.5 437 56.1
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 4.3e-127 459.1 436 56.0
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 4.3e-127 459.1 423 56.7
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 7.3e-127 458.4 385 61.0
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 9.6e-127 458.0 313 69.3
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 1.1e-125 454.5 382 60.7
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 4.0e-125 452.6 399 58.1
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 4.0e-125 452.6 418 57.2
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 1.5e-124 450.7 308 70.5
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 2.0e-124 450.3 389 57.6
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 2.0e-124 450.3 417 56.8
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 2.6e-124 449.9 393 57.0
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 3.4e-124 449.5 399 58.1
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 9.9e-124 448.0 393 57.3
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 9.9e-124 448.0 390 59.5
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 1.3e-123 447.6 420 56.4
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 2.9e-123 446.4 372 60.2
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 3.8e-123 446.0 421 55.1
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.8e-123 446.0 412 56.8
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 4.9e-123 445.7 417 56.1
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 8.4e-123 444.9 418 55.7
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 8.4e-123 444.9 389 57.3
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.1e-122 444.5 414 55.8
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 1.4e-122 444.1 431 54.1
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 3.2e-122 443.0 431 53.8
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 4.2e-122 442.6 376 59.8
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 5.4e-122 442.2 416 55.8
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 9.3e-122 441.4 445 53.7
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 9.3e-122 441.4 434 53.9
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 2.1e-121 440.3 395 57.0
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 2.1e-121 440.3 438 54.8
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 2.7e-121 439.9 396 56.6
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 4.6e-121 439.1 500 51.0
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 6.0e-121 438.7 321 65.4
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 1.0e-120 438.0 385 58.2
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.8e-120 437.2 394 57.4
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 3.0e-120 436.4 320 66.9
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.1e-120 435.6 356 62.1
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 8.7e-120 434.9 357 61.6
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.1e-119 434.5 402 54.7
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 1.9e-119 433.7 393 55.7
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 3.3e-119 433.0 458 51.1
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 5.6e-119 432.2 388 57.0
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.4e-119 431.8 399 55.6
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 7.4e-119 431.8 399 55.6
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 1.3e-118 431.0 379 55.4
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 1.6e-118 430.6 448 52.2
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 2.1e-118 430.3 416 56.2
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 2.8e-118 429.9 407 53.6
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 4.8e-118 429.1 381 55.1
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 6.2e-118 428.7 386 56.5
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 6.2e-118 428.7 308 65.3
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 1.1e-117 427.9 418 54.5
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 1.4e-117 427.6 467 51.2
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 9.0e-117 424.9 427 54.3
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 4.5e-116 422.5 381 57.5
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 7.6e-116 421.8 431 52.4
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 1.7e-115 420.6 302 66.9
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.7e-115 420.6 384 56.5
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 3.8e-115 419.5 425 52.2
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 8.4e-115 418.3 453 52.5
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 1.9e-114 417.2 380 54.5
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 5.5e-114 415.6 400 56.0
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 7.1e-114 415.2 318 64.8
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 3.5e-113 412.9 387 55.8
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 8.7e-112 408.3 307 63.2
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 8.2e-110 401.7 325 61.2
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 3.1e-109 399.8 318 65.1
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 4.0e-109 399.4 331 61.3
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 2.0e-108 397.1 389 52.7
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 5.8e-108 395.6 328 60.7
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.0e-107 394.8 447 50.1
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 2.2e-107 393.7 398 51.8
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 8.4e-107 391.7 372 53.5
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.9e-106 390.6 365 57.3
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 9.3e-106 388.3 380 55.5
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 9.3e-106 388.3 336 57.4
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 1.6e-105 387.5 419 52.0
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 7.4e-103 378.6 306 61.1
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 3.1e-101 373.2 292 63.4
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 1.0e-99 368.2 383 52.2
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 6.1e-97 359.0 278 62.6
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 2.5e-95 353.6 439 46.0
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 9.7e-95 351.7 379 50.7
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 8.8e-88 328.6 360 50.8
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.5e-87 327.8 352 48.6
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 2.8e-86 323.6 384 47.4
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 3.7e-86 323.2 357 47.1
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 2.7e-81 307.0 347 47.0
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 4.1e-77 293.1 215 64.7
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 1.4e-72 278.1 244 58.6
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 8.2e-70 268.9 239 55.6
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 3.1e-69 266.9 207 61.8
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 4.5e-68 263.1 354 41.5
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.1e-58 231.9 281 43.1
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.2e-57 228.4 279 40.5
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 1.7e-54 218.0 278 43.9
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 2.8e-49 200.7 261 43.3
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 3.0e-43 180.6 182 53.3
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 3.2e-37 160.6 147 53.7
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 5.4e-29 133.3 196 39.8
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 3.0e-27 127.5 143 49.0
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 3.9e-27 127.1 138 49.3
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.9e-22 110.9 69 69.6
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 5.6e-18 96.7 51 88.2
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 1.7e-11 75.1 61 57.4
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 8.1e-09 66.2 74 47.3
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 2.4e-08 64.7 78 41.0


User provided reference genes

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