Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 2.8e-216 755.0 371 100.0
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 8.9e-199 696.8 368 92.7
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 4.9e-197 691.0 370 91.6
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 3.1e-191 671.8 360 90.6
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 3.1e-191 671.8 359 90.0
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 2.0e-190 669.1 366 89.6
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 3.2e-188 661.8 368 87.8
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 8.6e-186 653.7 366 85.5
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 8.6e-186 653.7 358 87.4
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 8.6e-186 653.7 373 85.5
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 1.1e-185 653.3 364 85.2
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 1.5e-185 652.9 366 85.5
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 5.6e-185 651.0 362 86.2
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 1.2e-184 649.8 361 86.4
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 1.2e-184 649.8 359 87.7
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 3.6e-184 648.3 353 87.5
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 6.2e-184 647.5 359 85.8
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 6.2e-184 647.5 368 84.0
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 1.4e-183 646.4 362 86.2
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 2.4e-183 645.6 389 82.8
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 3.1e-183 645.2 358 86.0
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 5.2e-183 644.4 359 86.4
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 5.2e-183 644.4 372 84.1
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 5.2e-183 644.4 364 85.4
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 6.8e-183 644.0 361 85.3
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 8.9e-183 643.7 358 86.6
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 8.9e-183 643.7 353 86.4
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.2e-182 643.3 353 86.7
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 1.2e-182 643.3 371 84.1
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 2.0e-182 642.5 368 85.6
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 2.6e-182 642.1 364 86.5
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 3.4e-182 641.7 359 86.4
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 3.4e-182 641.7 353 87.0
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 3.4e-182 641.7 358 87.7
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 4.4e-182 641.3 363 86.0
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 5.8e-182 641.0 353 87.5
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 3.8e-181 638.3 358 85.5
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 4.9e-181 637.9 363 85.7
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 4.9e-181 637.9 363 85.7
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 4.9e-181 637.9 358 84.9
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 8.4e-181 637.1 379 82.1
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 8.4e-181 637.1 368 83.7
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 1.4e-180 636.3 363 84.0
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 3.2e-180 635.2 362 84.5
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 4.2e-180 634.8 379 82.1
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 5.4e-180 634.4 370 82.7
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 9.3e-180 633.6 356 86.2
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 2.7e-179 632.1 374 81.3
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 4.6e-179 631.3 355 84.5
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 4.6e-179 631.3 356 85.1
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 7.8e-179 630.6 369 82.4
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 1.0e-178 630.2 354 85.9
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 1.0e-178 630.2 354 85.9
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 1.0e-178 630.2 366 83.6
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 2.3e-178 629.0 365 83.8
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 3.0e-178 628.6 356 84.3
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 5.1e-178 627.9 370 82.7
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 6.6e-178 627.5 356 85.4
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 8.7e-178 627.1 352 85.8
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 1.1e-177 626.7 362 83.1
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 1.5e-177 626.3 366 83.3
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.9e-177 625.9 369 82.9
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 1.9e-177 625.9 353 84.7
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 3.3e-177 625.2 362 83.1
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 4.3e-177 624.8 363 82.9
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 4.3e-177 624.8 362 83.1
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 5.6e-177 624.4 384 81.0
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 7.3e-177 624.0 363 82.9
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 7.3e-177 624.0 362 81.8
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 9.6e-177 623.6 367 82.0
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 9.6e-177 623.6 356 83.7
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 1.3e-176 623.2 370 81.6
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 2.1e-176 622.5 355 84.5
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 2.8e-176 622.1 375 81.3
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 3.6e-176 621.7 378 80.7
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 1.4e-175 619.8 385 79.5
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 4.0e-175 618.2 362 81.8
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 5.3e-175 617.8 369 79.9
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 2.6e-174 615.5 363 81.0
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.6e-174 615.5 385 79.0
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 3.4e-174 615.1 363 82.1
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 5.8e-174 614.4 367 79.8
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 7.6e-174 614.0 362 81.2
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 1.7e-173 612.8 360 82.2
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 2.2e-173 612.5 393 77.4
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 3.8e-173 611.7 360 82.2
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 3.8e-173 611.7 356 81.2
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 8.4e-173 610.5 367 80.7
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 1.9e-172 609.4 353 84.1
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 1.9e-172 609.4 358 82.4
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 4.2e-172 608.2 341 84.5
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 4.6e-171 604.7 357 79.8
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 6.0e-171 604.4 358 79.9
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 1.1e-169 600.1 367 80.9
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 2.1e-168 595.9 356 81.2
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 2.8e-168 595.5 368 76.6
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 3.1e-167 592.0 370 78.4
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 2.6e-166 589.0 369 77.5
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 3.4e-166 588.6 435 70.8
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 4.5e-166 588.2 360 79.2
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 5.8e-166 587.8 360 79.2
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 6.4e-165 584.3 358 79.6
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 1.1e-164 583.6 382 74.9
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 4.2e-164 581.6 349 80.8
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 2.1e-163 579.3 369 77.5
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.6e-163 578.2 368 76.4
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 1.8e-162 576.2 368 77.4
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 5.1e-162 574.7 368 73.6
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 1.5e-161 573.2 355 76.6
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 4.3e-161 571.6 350 77.7
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 4.8e-160 568.2 351 77.5
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 6.2e-160 567.8 354 79.7
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.4e-159 565.8 353 79.3
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 9.0e-159 563.9 362 73.2
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.5e-156 555.8 363 75.8
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 1.6e-155 553.1 389 69.9
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 2.7e-155 552.4 355 75.2
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 5.7e-153 544.7 303 85.5
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 4.8e-152 541.6 350 73.1
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 3.1e-151 538.9 356 72.2
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.5e-150 536.6 357 73.4
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 5.9e-150 534.6 353 72.8
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 7.6e-150 534.3 357 72.8
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 2.2e-149 532.7 278 89.9
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 3.9e-146 521.9 360 69.4
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 2.8e-144 515.8 352 73.3
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 6.3e-144 514.6 361 71.7
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.7e-141 506.5 391 63.2
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.7e-139 499.2 290 81.7
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 2.0e-134 483.0 358 64.5
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 3.4e-134 482.3 247 93.1
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 6.5e-133 478.0 346 66.2
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 3.9e-130 468.8 711 42.1
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 3.5e-126 455.7 363 65.3
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 3.8e-125 452.2 310 68.4
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 8.5e-125 451.1 330 62.4
Sed0017389 Sechium edule HOM05D004177 ORTHO05D004826 3.2e-116 422.5 260 78.1
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 1.8e-111 406.8 359 55.7
Nn4g24829 Nelumbo nucifera HOM05D004177 ORTHO05D004826 6.5e-109 398.3 242 80.6
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 5.2e-106 388.7 335 60.3
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 6.1e-99 365.2 341 56.3
SGA_v2.0_scaffold439G51649 Striga asiatica HOM05D004177 ORTHO05D004826 1.5e-97 360.5 228 77.6
CBR_g31495 Chara braunii HOM05D004177 ORTHO05D004826 2.9e-96 356.3 252 67.1
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 1.6e-86 323.9 202 77.7
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 2.3e-85 320.1 291 59.5
CAN.G744.9 Capsicum annuum HOM05D004177 ORTHO05D004826 8.1e-51 205.3 131 78.6
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 6.4e-48 195.7 100 93.0
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 1.1e-47 194.9 126 80.2
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 9.3e-47 191.8 129 76.0
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 2.7e-46 190.3 129 76.0
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 3.5e-46 189.9 129 76.0
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 9.6e-44 181.8 103 87.4
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 9.6e-44 181.8 128 72.7
AagrBONN_evm.TU.Sc2ySwM_117.1724 Anthoceros agrestis HOM05D004177 ORTHO05D004826 1.6e-43 181.0 195 49.7
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 8.4e-40 168.7 98 79.6
Hund18419 Selenicereus undatus HOM05D004177 ORTHO05D004826 2.7e-38 163.7 115 72.2
C02p02540 Brassica napus HOM05D001260 ORTHO05D002424 3.9e-37 159.8 120 69.2
HPP92_016663 Vanilla planifolia HOM05D004177 ORTHO05D004826 7.4e-36 155.6 123 65.0
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 7.6e-33 145.6 131 58.8
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 2.0e-25 120.9 69 84.1
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 1.1e-23 115.2 64 84.4
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 2.5e-23 114.0 75 73.3
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 7.2e-23 112.5 64 84.4
AUR62030112 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.0e-17 94.4 62 77.4
CDE02G3953 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 7.7e-17 92.4 72 68.1
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 3.8e-16 90.1 84 56.0
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 4.2e-15 86.7 134 43.3
Pp3c1_32420 Physcomitrium patens HOM05D004177 ORTHO05D004826 2.0e-12 77.8 46 71.7
HanXRQChr13g0409471 Helianthus annuus HOM05D004177 ORTHO05D004826 2.6e-12 77.4 70 62.9
Medtr8g079080 Medicago truncatula HOM05D004177 ORTHO05D004826 2.9e-08 63.9 41 70.7
VMungo0647G1164 Vigna mungo HOM05D004177 ORTHO05D004826 9.4e-07 58.9 31 90.3


User provided reference genes

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