Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 0.0e+00 1505.0 750 100.0
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 4.2e-264 914.8 755 66.5
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 1.0e-254 883.6 751 63.2
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 4.5e-226 788.5 664 62.8
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 2.6e-205 719.5 756 52.5
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 3.2e-203 712.6 756 52.2
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 1.4e-198 697.2 761 51.9
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 3.8e-196 689.1 754 51.1
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.4e-196 688.0 757 52.0
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 4.1e-195 685.6 743 52.1
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 5.6e-192 675.2 763 49.5
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 2.1e-191 673.3 732 50.0
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 6.2e-191 671.8 770 50.4
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 1.4e-190 670.6 755 50.6
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.4e-190 669.8 755 50.2
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 2.6e-189 666.4 756 50.3
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.2e-188 663.3 755 50.2
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 8.4e-188 661.4 755 49.4
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.4e-187 659.8 755 49.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.1e-186 656.8 755 49.0
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 1.3e-180 637.5 740 48.8
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 1.7e-180 637.1 759 47.6
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 1.1e-179 634.4 764 48.3
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.9e-179 633.6 776 48.6
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 3.2e-179 632.9 752 48.4
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 9.3e-179 631.3 752 48.4
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 1.2e-178 630.9 775 47.9
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 1.3e-177 627.5 749 49.0
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 4.3e-176 622.5 751 48.7
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 5.6e-176 622.1 754 49.3
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 5.6e-176 622.1 754 45.2
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 3.7e-175 619.4 754 46.4
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 4.0e-174 615.9 750 46.3
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 9.0e-174 614.8 757 46.9
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 2.0e-173 613.6 699 49.5
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 3.4e-173 612.8 755 47.8
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 4.5e-173 612.5 759 46.6
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 9.9e-173 611.3 762 47.4
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 1.3e-172 610.9 755 46.5
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 1.7e-172 610.5 761 45.3
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 4.9e-172 609.0 757 47.6
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 6.4e-172 608.6 756 45.4
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 9.3e-171 604.7 761 46.1
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 9.3e-171 604.7 755 46.1
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 2.7e-170 603.2 751 46.9
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 3.5e-170 602.8 750 44.7
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 4.3e-168 595.9 766 45.7
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 9.6e-168 594.7 758 44.9
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 1.3e-167 594.3 753 44.6
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 4.8e-167 592.4 763 45.0
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 1.4e-166 590.9 756 44.6
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 1.2e-165 587.8 757 45.7
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.0e-164 584.7 737 45.5
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 2.2e-164 583.6 756 44.7
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 9.3e-163 578.2 756 44.2
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 2.1e-162 577.0 757 45.3
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 1.8e-161 573.9 751 44.3
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 3.0e-161 573.2 750 43.9
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 3.9e-161 572.8 718 45.8
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 8.7e-161 571.6 746 44.6
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 2.5e-160 570.1 764 44.2
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 4.8e-159 565.8 756 42.7
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 1.8e-158 563.9 756 44.0
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 2.0e-157 560.5 750 42.8
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 2.0e-157 560.5 756 42.6
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.0e-157 560.5 755 43.2
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 3.8e-156 556.2 747 42.6
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.0e-153 548.1 804 41.0
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 5.1e-153 545.8 696 44.4
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 3.3e-152 543.1 696 44.3
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 6.3e-151 538.9 677 46.5
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 1.9e-147 527.3 692 43.4
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 1.1e-144 518.1 709 42.3
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 1.7e-143 514.2 692 42.2
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 4.8e-143 512.7 751 40.6
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 1.0e-140 505.0 601 48.1
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 1.8e-137 494.2 770 39.2
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 1.2e-130 471.5 378 64.0
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 4.4e-128 463.0 769 35.5
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 6.3e-127 459.1 473 53.9
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 1.4e-126 458.0 754 39.3
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 3.5e-125 453.4 662 40.5
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 5.5e-123 446.0 505 51.5
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 3.0e-121 440.3 459 51.0
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 2.2e-119 434.1 462 51.5
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 2.4e-110 404.1 430 50.7
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 1.6e-106 391.3 736 35.2
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 8.0e-106 389.0 454 46.5
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 6.8e-105 386.0 694 37.2
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 2.3e-100 370.9 379 53.0
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.0e-100 370.5 255 72.5
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 5.6e-99 366.3 278 65.5
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 1.2e-93 348.6 255 65.1
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 1.7e-92 344.7 329 53.5
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 8.6e-92 342.4 360 51.7
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.4e-86 324.3 288 58.0
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 5.4e-86 323.2 257 63.4
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.2e-85 322.0 252 61.5
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 4.7e-82 310.1 345 48.1
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.5e-80 305.1 439 43.7
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 1.4e-78 298.5 469 39.0
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 8.1e-74 282.7 777 28.3
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 1.4e-73 282.0 884 28.2
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 5.3e-73 280.0 787 27.7
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 2.3e-68 264.6 439 39.9
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 4.9e-63 246.9 215 57.2
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 2.1e-61 241.5 765 25.8
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 8.1e-58 229.6 180 63.3
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 5.8e-56 223.4 280 47.9
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 7.6e-56 223.0 160 66.9
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 8.7e-52 209.5 180 60.6
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 2.5e-51 208.0 275 44.0
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.6e-50 205.3 249 49.0
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 8.2e-50 203.0 160 60.0
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 1.1e-49 202.6 877 23.4
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 4.9e-47 193.7 181 55.2
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 9.7e-43 179.5 157 60.5
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 4.8e-42 177.2 696 26.3
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 2.1e-37 161.8 104 71.2
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 2.0e-35 155.2 152 53.3
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 2.8e-26 124.8 98 64.3
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 5.0e-23 114.0 241 39.8
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 3.7e-18 97.8 164 39.6
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 4.8e-18 97.4 134 44.0
Actinidia27038 Actinidia chinensis HOM05D002899 ORTHO05D003850 1.3e-10 72.8 161 35.4
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 4.1e-09 67.8 128 37.5
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.1e-06 59.7 33 75.8
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 7.2e-06 57.0 60 41.7
RcHm_v2.0_Chr6g0290011 Rosa chinensis HOM05D005820 ORTHO05D007116 7.2e-06 57.0 35 71.4


User provided reference genes

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