Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 2.7e-74 282.0 145 100.0
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 8.6e-73 276.9 145 97.9
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 4.0e-62 241.5 145 86.9
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 3.7e-60 235.0 143 86.7
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 84.1
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 9.2e-59 230.3 144 84.0
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.2e-58 229.9 145 84.1
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 2.1e-58 229.2 145 83.4
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 2.1e-58 229.2 144 85.4
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 6.0e-58 227.6 146 83.6
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 6.0e-58 227.6 144 84.7
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 6.0e-58 227.6 144 84.7
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 1.3e-57 226.5 145 82.8
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 3.9e-57 224.9 145 83.4
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 3.9e-57 224.9 135 87.4
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 6.6e-57 224.2 145 82.1
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 6.6e-57 224.2 142 83.8
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 1.9e-56 222.6 145 82.1
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 1.9e-56 222.6 145 82.8
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 1.9e-56 222.6 146 83.6
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 9.5e-56 220.3 145 81.4
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.2e-55 219.9 146 82.2
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 2.1e-55 219.2 147 82.3
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 82.2
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 2.1e-55 219.2 146 82.2
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 2.1e-55 219.2 145 84.1
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 4.7e-55 218.0 145 80.0
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 6.2e-55 217.6 145 82.8
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 8.1e-55 217.2 146 81.5
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 1.1e-54 216.9 146 81.5
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 1.4e-54 216.5 145 81.4
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.4e-54 216.5 147 81.6
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 1.4e-54 216.5 146 80.8
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 2.4e-54 215.7 144 81.9
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 2.4e-54 215.7 144 81.9
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 2.4e-54 215.7 135 85.9
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 3.1e-54 215.3 151 79.5
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 3.1e-54 215.3 145 80.7
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 3.1e-54 215.3 146 81.5
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 4.0e-54 214.9 144 82.6
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 8.9e-54 213.8 144 79.9
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 1.2e-53 213.4 146 80.1
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 2.0e-53 212.6 134 85.8
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 2.6e-53 212.2 145 79.3
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 2.6e-53 212.2 141 80.9
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 3.4e-53 211.8 144 80.6
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 3.4e-53 211.8 145 81.4
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.4e-53 211.8 147 80.3
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 3.4e-53 211.8 145 80.0
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 4.4e-53 211.5 147 80.3
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 4.4e-53 211.5 145 79.3
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 4.4e-53 211.5 145 81.4
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 4.4e-53 211.5 145 81.4
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 5.8e-53 211.1 145 79.3
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 7.6e-53 210.7 147 80.3
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 7.6e-53 210.7 145 80.7
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 7.6e-53 210.7 143 80.4
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 7.6e-53 210.7 146 79.5
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 9.9e-53 210.3 145 78.6
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 9.9e-53 210.3 145 78.6
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 9.9e-53 210.3 146 78.1
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 9.9e-53 210.3 142 79.6
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 9.9e-53 210.3 181 68.0
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.3e-52 209.9 134 83.6
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.3e-52 209.9 145 80.7
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 1.3e-52 209.9 148 80.4
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 1.3e-52 209.9 159 74.8
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.7e-52 209.5 132 84.8
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 2.2e-52 209.1 147 79.6
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 2.9e-52 208.8 145 77.9
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 2.9e-52 208.8 146 78.8
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 2.9e-52 208.8 169 71.0
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 3.8e-52 208.4 146 78.1
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 4.9e-52 208.0 147 79.6
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 4.9e-52 208.0 145 76.6
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 4.9e-52 208.0 144 81.9
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 1.4e-51 206.5 145 77.2
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 1.9e-51 206.1 145 77.9
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 2.4e-51 205.7 147 78.9
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 3.2e-51 205.3 147 78.2
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 3.2e-51 205.3 132 83.3
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 3.2e-51 205.3 132 82.6
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 3.2e-51 205.3 146 77.4
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 3.2e-51 205.3 145 77.9
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 4.1e-51 204.9 147 78.2
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 5.4e-51 204.5 145 77.9
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 7.1e-51 204.1 146 78.1
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 9.2e-51 203.8 147 77.6
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 1.2e-50 203.4 147 78.2
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 1.2e-50 203.4 145 77.2
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 1.2e-50 203.4 146 77.4
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 1.6e-50 203.0 147 76.9
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 2.1e-50 202.6 147 76.9
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 4.6e-50 201.4 145 77.9
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 4.6e-50 201.4 145 76.6
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 6.0e-50 201.1 147 76.2
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 6.0e-50 201.1 145 76.6
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 6.0e-50 201.1 145 78.6
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 7.8e-50 200.7 147 76.9
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 7.8e-50 200.7 147 76.2
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.0e-49 200.3 145 75.9
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 1.0e-49 200.3 143 78.3
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.0e-49 200.3 147 75.5
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 1.0e-49 200.3 147 76.9
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.7e-49 199.5 147 75.5
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 2.3e-49 199.1 148 76.4
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 2.3e-49 199.1 147 75.5
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 3.0e-49 198.7 144 79.9
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 3.9e-49 198.4 147 74.8
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 3.9e-49 198.4 129 82.9
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 6.6e-49 197.6 147 74.8
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 6.6e-49 197.6 147 74.8
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 6.6e-49 197.6 147 74.8
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 6.6e-49 197.6 147 74.8
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 6.6e-49 197.6 147 74.8
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 1.1e-48 196.8 147 76.2
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 1.5e-48 196.4 147 74.8
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.5e-48 196.4 129 80.6
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 4.3e-48 194.9 147 74.1
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 5.6e-48 194.5 145 75.9
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 7.3e-48 194.1 143 76.2
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.6e-47 193.0 143 78.3
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 3.6e-47 191.8 142 76.1
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 1.8e-46 189.5 146 75.3
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.2e-46 188.0 147 74.1
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 5.2e-46 188.0 149 74.5
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 6.9e-46 187.6 146 74.0
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 6.9e-46 187.6 147 74.1
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.2e-45 186.8 121 86.0
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 2.6e-45 185.7 146 72.6
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.6e-45 185.7 144 72.2
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 2.6e-45 185.7 145 73.1
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 2.6e-45 185.7 145 73.1
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 2.6e-45 185.7 145 73.1
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 2.6e-45 185.7 145 73.1
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 7.6e-45 184.1 144 72.2
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 1.7e-44 183.0 203 57.1
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 2.2e-44 182.6 144 72.2
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 2.2e-44 182.6 139 75.5
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 6.4e-44 181.0 145 73.1
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 8.4e-44 180.6 146 71.2
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 3.2e-43 178.7 133 73.7
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 1.2e-42 176.8 136 72.1
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 1.2e-42 176.8 144 69.4
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 2.1e-42 176.0 145 71.7
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 2.1e-42 176.0 116 82.8
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 7.8e-42 174.1 133 74.4
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 2.3e-41 172.6 92 89.1
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 8.7e-41 170.6 124 79.0
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 2.5e-40 169.1 135 71.9
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 3.3e-40 168.7 147 67.3
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 4.8e-39 164.9 109 81.7
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 1.2e-37 160.2 90 87.8
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 2.6e-37 159.1 123 76.4
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 4.9e-36 154.8 143 62.9
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 6.4e-36 154.5 121 73.6
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 7.1e-35 151.0 121 71.1
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.5e-32 143.3 105 80.0
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 7.4e-32 141.0 134 63.4
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 2.8e-31 139.0 138 60.1
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.1e-30 137.1 143 60.1
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 4.5e-29 131.7 131 63.4
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.3e-28 130.2 99 77.8
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 6.4e-28 127.9 137 56.2
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 8.4e-28 127.5 119 65.5
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 8.4e-28 127.5 119 65.5
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 7.1e-27 124.4 134 56.7
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 7.9e-26 120.9 69 82.6
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 3.0e-25 119.0 64 89.1
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 3.0e-25 119.0 104 70.2
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 2.5e-24 115.9 143 51.7
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 2.1e-23 112.8 99 69.7
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 2.8e-23 112.5 132 52.3
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 1.4e-22 110.2 132 50.0
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 6.5e-20 101.3 82 74.4
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 3.2e-19 99.0 82 63.4
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 2.7e-18 95.9 96 64.6
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 7.9e-18 94.4 97 62.9
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 2.3e-17 92.8 45 91.1
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 4.3e-16 88.6 83 66.3
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 2.8e-15 85.9 77 68.8
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 2.3e-09 66.2 35 94.3
DCAR_013632 Daucus carota HOM05D003818 ORTHO05D175173 3.7e-07 58.9 80 50.0


User provided reference genes

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