Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0124600 Rhododendron simsii HOM05D006791 ORTHO05D008221 8.0e-70 266.9 131 100.0
CSS0049359 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 1.8e-53 212.6 128 79.7
vmacro07081 Vaccinium macrocarpon HOM05D006791 ORTHO05D008221 7.6e-52 207.2 169 68.0
Actinidia03042 Actinidia chinensis HOM05D006791 ORTHO05D008221 2.2e-51 205.7 128 81.2
CSS0037701 Camellia sinensis var. sinensis HOM05D006791 ORTHO05D008221 2.2e-51 205.7 130 78.5
Hma1.2p1_0063F.1_g034360 Hydrangea macrophylla HOM05D006791 ORTHO05D008221 2.2e-51 205.7 121 81.0
Dinv31358 Davidia involucrata HOM05D006791 ORTHO05D008221 2.4e-50 202.2 128 75.8
Gohir.A06G178100 Gossypium hirsutum HOM05D006791 ORTHO05D008221 8.6e-48 193.7 127 73.2
Gohir.D06G176900 Gossypium hirsutum HOM05D006791 ORTHO05D008221 1.5e-47 193.0 127 73.2
Gorai.010G204900 Gossypium raimondii HOM05D006791 ORTHO05D008221 1.9e-47 192.6 127 72.4
Eucgr.G02814 Eucalyptus grandis HOM05D006791 ORTHO05D008221 4.3e-47 191.4 120 75.0
Oeu033855.1 Olea europaea HOM05D006791 ORTHO05D008221 4.3e-47 191.4 126 70.6
Haze_16919 Corylus avellana HOM05D006791 ORTHO05D008221 5.6e-47 191.0 117 79.5
Sopen02g013520 Solanum pennellii HOM05D006791 ORTHO05D008221 7.3e-47 190.7 120 75.0
Ciclev10033672m.g Citrus clementina HOM05D006791 ORTHO05D008221 9.6e-47 190.3 127 70.1
PGSC0003DMG401015497 Solanum tuberosum HOM05D006791 ORTHO05D008221 1.2e-46 189.9 117 76.1
TWI15G0354 Tripterygium wilfordii HOM05D006791 ORTHO05D008221 1.2e-46 189.9 126 73.8
Solyc02g062520.3 Solanum lycopersicum HOM05D006791 ORTHO05D008221 2.1e-46 189.1 120 74.2
Cc02_g11450 Coffea canephora HOM05D006791 ORTHO05D008221 4.7e-46 188.0 127 71.7
Thhalv10010446m.g Eutrema salsugineum HOM05D006791 ORTHO05D008221 4.7e-46 188.0 119 74.8
GSVIVG01016310001 Vitis vinifera HOM05D006791 ORTHO05D008221 8.1e-46 187.2 126 72.2
DCAR_019128 Daucus carota HOM05D006791 ORTHO05D008221 1.4e-45 186.4 123 75.6
Peaxi162Scf00108g00912 Petunia axillaris HOM05D006791 ORTHO05D008221 2.4e-45 185.7 119 74.8
CiPaw.01G274700 Carya illinoinensis HOM05D006791 ORTHO05D008221 3.1e-45 185.3 117 75.2
COL.COLO4_23713 Corchorus olitorius HOM05D006791 ORTHO05D008221 4.0e-45 184.9 117 75.2
QL08p056563 Quercus lobata HOM05D006791 ORTHO05D008221 4.0e-45 184.9 117 76.1
Thecc.10G070300 Theobroma cacao HOM05D006791 ORTHO05D008221 4.0e-45 184.9 120 73.3
Duzib106G0039 Durio zibethinus HOM05D006791 ORTHO05D008221 6.8e-45 184.1 120 75.0
RcHm_v2.0_Chr1g0363851 Rosa chinensis HOM05D006791 ORTHO05D008221 8.9e-45 183.7 127 70.9
Cpa.g.sc466.9 Carica papaya HOM05D006791 ORTHO05D008221 1.2e-44 183.3 127 71.7
Manes.07G103500 Manihot esculenta HOM05D006791 ORTHO05D008221 1.2e-44 183.3 127 70.9
PGR142G3028 Punica granatum HOM05D006791 ORTHO05D008221 1.5e-44 183.0 119 74.8
Potri.008G042000 Populus trichocarpa HOM05D006791 ORTHO05D008221 2.0e-44 182.6 127 70.1
Prupe.2G215700 Prunus persica HOM05D006791 ORTHO05D008221 2.0e-44 182.6 128 69.5
AL5G32850 Arabidopsis lyrata HOM05D006791 ORTHO05D008221 3.4e-44 181.8 119 71.4
FAN06G1214 Fragaria x ananassa HOM05D006791 ORTHO05D008221 4.4e-44 181.4 127 67.7
Aa31LG10G7360 Aethionema arabicum HOM05D006791 ORTHO05D008221 7.6e-44 180.6 117 72.6
CAN.G131.1 Capsicum annuum HOM05D006791 ORTHO05D008221 7.6e-44 180.6 128 70.3
FvH4_7g19860 Fragaria vesca HOM05D006791 ORTHO05D008221 9.9e-44 180.3 127 66.9
Sabra08G0028900 Salix brachista HOM05D006791 ORTHO05D008221 1.3e-43 179.9 128 68.8
FAN10G1968 Fragaria x ananassa HOM05D006791 ORTHO05D008221 2.2e-43 179.1 128 67.2
MD07G1176900 Malus domestica HOM05D006791 ORTHO05D008221 2.2e-43 179.1 119 72.3
FAN01G2861 Fragaria x ananassa HOM05D002197 ORTHO05D008221 3.8e-43 178.3 127 66.9
THA.LOC104802594 Tarenaya hassleriana HOM05D006791 ORTHO05D008221 3.8e-43 178.3 121 66.1
Atru.chr12.724 Acer truncatum HOM05D006791 ORTHO05D008221 6.4e-43 177.6 128 68.8
FAN03G2469 Fragaria x ananassa HOM05D006791 ORTHO05D008221 6.4e-43 177.6 127 66.9
Migut.F01766 Erythranthe guttata HOM05D006791 ORTHO05D008221 8.4e-43 177.2 117 75.2
MELO3C002896.2 Cucumis melo HOM05D006791 ORTHO05D008221 3.2e-42 175.3 126 69.0
CsaV3_5G025780 Cucumis sativus L. HOM05D006791 ORTHO05D008221 3.2e-42 175.3 119 72.3
CARHR162020 Cardamine hirsuta HOM05D006791 ORTHO05D008221 4.2e-42 174.9 122 69.7
Nn2g10715 Nelumbo nucifera HOM05D006791 ORTHO05D008221 4.2e-42 174.9 118 71.2
EL10Ac2g03590 Beta vulgaris HOM05D006791 ORTHO05D008221 9.3e-42 173.7 126 66.7
Aqoxy7G02243 Aquilegia oxysepala HOM05D006791 ORTHO05D008221 1.6e-41 172.9 121 68.6
Lalb_Chr06g0162211 Lupinus albus HOM05D006791 ORTHO05D008221 1.6e-41 172.9 127 69.3
ClCG09G020610 Citrullus lanatus HOM05D006791 ORTHO05D008221 2.7e-41 172.2 128 66.4
ECA233G0118 Erigeron canadensis HOM05D000058 ORTHO05D008221 2.7e-41 172.2 116 71.6
MBI14_g40667_MAGBIO Magnolia biondii HOM05D006791 ORTHO05D008221 2.7e-41 172.2 125 67.2
Medtr1g095580 Medicago truncatula HOM05D006791 ORTHO05D008221 4.6e-41 171.4 116 71.6
CANSAT56G4374 Cannabis sativa HOM05D006791 ORTHO05D008221 7.8e-41 170.6 127 65.4
Ca_10581_v3 Cicer arietinum L. HOM05D006791 ORTHO05D008221 1.0e-40 170.2 116 70.7
HanXRQChr08g0219631 Helianthus annuus HOM05D006791 ORTHO05D008221 1.3e-40 169.9 139 61.9
SalBow3G2210 Salvia bowleyana HOM05D006791 ORTHO05D008221 1.3e-40 169.9 119 71.4
TPR.G1805 Trifolium pratense HOM05D006791 ORTHO05D008221 1.3e-40 169.9 116 70.7
Glyma.20G178400 Glycine max HOM05D006791 ORTHO05D008221 2.3e-40 169.1 116 70.7
Lj5g0025337 Lotus japonicus HOM05D006791 ORTHO05D008221 2.3e-40 169.1 116 70.7
PSO384G4004 Papaver somniferum HOM05D006791 ORTHO05D008221 5.1e-40 167.9 129 66.7
Phvul.007G093000 Phaseolus vulgaris HOM05D006791 ORTHO05D008221 5.1e-40 167.9 116 70.7
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 1.5e-39 166.4 135 64.4
arahy.Tifrunner.gnm1.ann1.86UM3X Arachis hypogaea HOM05D006791 ORTHO05D008221 1.9e-39 166.0 134 63.4
Psat6g185200 Pisum sativum HOM05D006791 ORTHO05D008221 2.5e-39 165.6 116 68.1
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 2.5e-39 165.6 116 69.0
MSTRG.371 Avicennia marina HOM05D006791 ORTHO05D008221 3.3e-39 165.2 115 70.4
SGA_v2.0_scaffold341G49357 Striga asiatica HOM05D006791 ORTHO05D008221 3.3e-39 165.2 117 70.1
C07p46860 Brassica napus HOM05D006791 ORTHO05D008221 4.3e-39 164.9 133 64.7
Lj8A97G46 Lonicera japonica HOM05D006791 ORTHO05D008221 4.3e-39 164.9 136 64.7
Nitab4.5_0004081g0030 Nicotiana tabacum HOM05D006791 ORTHO05D008221 7.3e-39 164.1 129 63.6
Lsat_1_v5_gn_8_20021 Lactuca sativa HOM05D006791 ORTHO05D008221 9.6e-39 163.7 116 67.2
arahy.Tifrunner.gnm1.ann1.7LH3TR Arachis hypogaea HOM05D002197 ORTHO05D008221 1.3e-38 163.3 134 62.7
ATR0759G009 Amborella trichopoda HOM05D006791 ORTHO05D008221 2.8e-38 162.2 122 63.9
Zm00001eb013230 Zea mays HOM05D006791 ORTHO05D008221 3.6e-38 161.8 122 67.2
Nitab4.5_0000233g0130 Nicotiana tabacum HOM05D006791 ORTHO05D008221 1.8e-37 159.5 129 62.0
unitig_747.g21478 Utricularia gibba HOM05D006791 ORTHO05D008221 3.1e-37 158.7 125 63.2
CDE09G0276 Ceratophyllum demersum HOM05D006791 ORTHO05D008221 7.6e-36 154.1 116 63.8
BolC7t45202H Brassica oleracea HOM05D006791 ORTHO05D008221 9.9e-36 153.7 151 57.0
A03p48770 Brassica napus HOM05D006791 ORTHO05D008221 1.7e-35 152.9 121 67.8
BraA03t13977Z Brassica rapa HOM05D006791 ORTHO05D008221 6.4e-35 151.0 142 59.9
AUR62027952 Chenopodium quinoa HOM05D006791 ORTHO05D008221 2.4e-34 149.1 100 69.0
Sp5g10000 Schrenkiella parvula HOM05D006791 ORTHO05D008221 2.4e-34 149.1 91 79.1
HPP92_001044 Vanilla planifolia HOM05D006791 ORTHO05D008221 2.1e-33 146.0 117 59.0
AT3G52260 Arabidopsis thaliana HOM05D006791 ORTHO05D008221 4.6e-33 144.8 91 75.8
Sc20g0001960 Simmondsia chinensis HOM05D006791 ORTHO05D008221 5.6e-31 137.9 94 70.2
AagrBONN_evm.TU.Sc2ySwM_344.689 Anthoceros agrestis HOM05D006791 ORTHO05D008221 4.0e-29 131.7 102 60.8
Mapoly0002s0246 Marchantia polymorpha HOM05D006791 ORTHO05D008221 2.6e-28 129.0 100 61.0
SMO347G0025 Selaginella moellendorffii HOM05D006791 ORTHO05D008221 9.9e-28 127.1 102 60.8
Pp3c20_1270 Physcomitrium patens HOM05D006791 ORTHO05D008221 4.2e-26 121.7 102 61.8
TAR633G1431 Trochodendron aralioides HOM05D006791 ORTHO05D008221 2.8e-22 109.0 77 70.1
Carub.0005s1862 Capsella rubella HOM05D006791 ORTHO05D008221 3.1e-21 105.5 72 70.8
Hund22514 Selenicereus undatus HOM05D006791 ORTHO05D008221 3.8e-19 98.6 79 63.3
Cre16.g689100 Chlamydomonas reinhardtii HOM05D006791 ORTHO05D008221 1.8e-16 89.7 154 35.7
SEGI_03069 Sequoiadendron giganteum HOM05D006791 ORTHO05D008221 1.8e-16 89.7 68 57.4
Sed0012525 Sechium edule HOM05D006791 ORTHO05D008221 1.6e-14 83.2 119 42.0
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 2.7e-09 65.9 93 37.6
MCO11G777 Micromonas commoda HOM05D007020 ORTHO05D008935 5.7e-07 58.2 111 36.9
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 9.7e-07 57.4 102 36.3
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 1.6e-06 56.6 104 33.7
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 2.8e-06 55.8 99 35.4
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 3.7e-06 55.5 98 33.7
Ca_15469_v3 Cicer arietinum L. HOM05D007020 ORTHO05D008935 3.7e-06 55.5 107 34.6
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 3.7e-06 55.5 103 30.1
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 4.8e-06 55.1 103 35.0
arahy.Tifrunner.gnm1.ann1.W20NI2 Arachis hypogaea HOM05D007020 ORTHO05D008935 6.3e-06 54.7 100 35.0
arahy.Tifrunner.gnm1.ann1.YGS75T Arachis hypogaea HOM05D007020 ORTHO05D008935 6.3e-06 54.7 100 35.0
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 6.3e-06 54.7 100 33.0
Lalb_Chr08g0246281 Lupinus albus HOM05D007020 ORTHO05D008935 6.3e-06 54.7 107 32.7
MBI17_g14568_MAGBIO Magnolia biondii HOM05D007020 ORTHO05D008935 6.3e-06 54.7 98 33.7
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 8.2e-06 54.3 111 34.2
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 8.2e-06 54.3 101 32.7
PGR083G0448 Punica granatum HOM05D005705 ORTHO05D007152 8.2e-06 54.3 100 37.0


User provided reference genes

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