Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 9.9e-133 476.9 254 100.0
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 2.1e-82 309.7 163 97.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.2e-66 257.3 221 67.0
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 2.9e-60 236.1 197 67.5
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.1e-59 234.2 187 68.4
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 2.5e-59 233.0 189 67.2
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 8.9e-57 224.6 189 65.1
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-56 223.4 189 64.6
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.0e-56 223.4 189 64.6
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 1.7e-52 210.3 189 60.8
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 4.3e-51 205.7 239 53.6
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 2.0e-48 196.8 203 54.7
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 9.8e-48 194.5 221 51.1
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.2e-47 193.4 216 50.5
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 8.3e-47 191.4 189 55.0
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.1e-46 191.0 222 48.6
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 1.9e-46 190.3 151 64.9
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 9.2e-46 188.0 216 48.1
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.0e-45 186.8 222 47.3
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 2.0e-45 186.8 222 47.7
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 2.7e-45 186.4 222 47.3
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 4.6e-45 185.7 222 47.3
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 3.0e-44 183.0 216 47.7
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 8.6e-44 181.4 233 45.5
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 1.5e-43 180.6 217 46.1
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 1.9e-43 180.3 190 52.1
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.2e-42 177.6 189 49.2
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 3.4e-40 169.5 189 48.1
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 4.4e-40 169.1 189 48.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 9.8e-40 167.9 189 49.2
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 1.3e-39 167.5 189 50.3
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 1.7e-39 167.2 190 47.9
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 4.9e-39 165.6 189 49.2
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 8.3e-39 164.9 103 75.7
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 1.1e-38 164.5 189 46.6
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 1.9e-38 163.7 193 47.7
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 5.4e-38 162.2 215 48.4
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 7.1e-38 161.8 190 46.8
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 7.1e-38 161.8 190 46.8
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 9.2e-38 161.4 191 48.2
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 9.2e-38 161.4 189 45.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 1.2e-37 161.0 191 45.0
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 1.2e-37 161.0 189 48.1
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 2.1e-37 160.2 192 46.9
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 3.5e-37 159.5 190 46.3
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 7.8e-37 158.3 192 46.4
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 7.8e-37 158.3 104 70.2
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 7.8e-37 158.3 191 45.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.3e-36 157.5 191 44.5
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 3.0e-36 156.4 189 45.5
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 3.0e-36 156.4 193 44.0
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 3.9e-36 156.0 191 44.0
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 5.1e-36 155.6 188 44.7
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 5.1e-36 155.6 188 44.7
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.6e-36 155.2 191 44.5
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 8.6e-36 154.8 191 45.5
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 8.6e-36 154.8 190 46.3
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 8.6e-36 154.8 192 45.3
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.1e-35 154.5 191 44.5
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.1e-35 154.5 191 45.5
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 1.5e-35 154.1 192 45.8
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-35 154.1 193 45.6
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 1.5e-35 154.1 193 45.6
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 2.5e-35 153.3 191 44.0
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 3.3e-35 152.9 189 44.4
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 3.3e-35 152.9 191 44.0
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 4.3e-35 152.5 201 41.8
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 4.3e-35 152.5 191 45.0
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 7.3e-35 151.8 193 44.0
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 9.5e-35 151.4 191 44.5
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 9.5e-35 151.4 243 37.0
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 1.2e-34 151.0 113 68.1
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 2.1e-34 150.2 189 44.4
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.8e-34 149.8 191 43.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 8.1e-34 148.3 191 43.5
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.1e-33 147.9 190 43.2
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.4e-33 147.5 194 43.3
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 1.8e-33 147.1 190 43.7
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 1.8e-33 147.1 193 42.5
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.3e-33 146.7 193 44.0
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 2.3e-33 146.7 193 44.0
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.3e-33 146.7 191 43.5
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 3.1e-33 146.4 190 43.7
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 4.0e-33 146.0 193 43.0
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 5.2e-33 145.6 195 43.1
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 5.2e-33 145.6 193 42.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 8.9e-33 144.8 194 42.8
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 1.2e-32 144.4 198 41.4
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 1.2e-32 144.4 192 42.7
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 1.2e-32 144.4 193 41.5
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 1.2e-32 144.4 193 42.5
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 1.2e-32 144.4 193 42.5
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.5e-32 144.1 193 43.5
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 1.5e-32 144.1 189 41.3
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 3.4e-32 142.9 192 43.2
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 3.4e-32 142.9 191 42.9
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 4.4e-32 142.5 193 40.9
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 4.4e-32 142.5 190 43.2
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 4.4e-32 142.5 190 43.2
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 4.4e-32 142.5 194 41.8
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 5.8e-32 142.1 193 41.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 9.9e-32 141.4 191 40.8
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.7e-31 140.6 193 40.4
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.7e-31 140.6 174 44.8
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 2.9e-31 139.8 193 42.5
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 4.9e-31 139.0 193 40.4
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 8.4e-31 138.3 146 52.7
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 1.1e-30 137.9 188 41.5
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.9e-30 137.1 189 40.7
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.1e-29 133.7 200 39.5
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.7e-29 133.3 193 39.4
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 1.7e-28 130.6 103 61.2
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.3e-28 130.2 199 39.7
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 3.0e-28 129.8 191 39.8
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 3.9e-28 129.4 199 37.2
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 5.1e-28 129.0 163 45.4
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 2.5e-27 126.7 258 33.7
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 1.6e-26 124.0 200 38.0
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 2.8e-26 123.2 107 57.9
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 3.6e-26 122.9 164 43.3
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 8.1e-26 121.7 190 36.8
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 1.8e-25 120.6 110 54.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.9e-25 118.6 110 57.3
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 3.4e-24 116.3 139 46.8
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.8e-24 115.5 190 37.9
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.8e-24 115.5 190 37.9
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 1.9e-22 110.5 189 34.9
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.9e-22 110.5 103 52.4
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.4e-22 110.2 104 50.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.4e-22 110.2 107 52.3
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.6e-21 107.5 108 49.1
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 6.0e-21 105.5 148 39.2
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 7.8e-21 105.1 148 43.9
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.7e-20 104.0 153 42.5
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 6.6e-20 102.1 189 33.3
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 6.6e-20 102.1 176 38.6
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 1.5e-19 100.9 189 33.3
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 2.1e-18 97.1 189 33.9
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 2.4e-17 93.6 144 38.2
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 5.3e-17 92.4 151 41.7
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.0e-16 90.5 151 38.4
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.6e-16 90.1 48 91.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 4.5e-16 89.4 130 38.5
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 8.4e-15 85.1 73 58.9
Hma1.2p1_1398F.1_g280823 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 2.7e-13 80.1 49 77.6
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 6.7e-12 75.5 108 38.9
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 1.5e-11 74.3 68 52.9
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.5e-11 74.3 191 26.7
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 2.1e-10 70.5 50 68.0
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 5.3e-09 65.9 50 62.0
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 1.2e-08 64.7 120 33.3
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.9e-07 60.1 53 52.8


User provided reference genes

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