Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 3.4e-131 471.9 269 100.0
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.7e-90 336.7 199 90.5
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 2.9e-90 335.9 201 90.0
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 6.0e-88 328.2 201 89.6
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 3.9e-87 325.5 194 87.1
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 7.4e-86 321.2 201 88.1
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.3e-85 320.5 201 86.6
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 1.3e-85 320.5 193 89.1
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 1.6e-85 320.1 193 88.6
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 6.2e-85 318.2 223 83.4
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 1.1e-84 317.4 201 83.1
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.8e-84 316.6 199 85.4
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 3.1e-84 315.8 199 83.9
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 3.1e-84 315.8 194 89.7
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 4.0e-84 315.5 201 84.6
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 4.0e-84 315.5 201 83.1
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 5.3e-84 315.1 194 86.6
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 5.3e-84 315.1 199 84.4
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 1.2e-83 313.9 198 86.4
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 1.2e-83 313.9 190 87.4
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 7.6e-83 311.2 196 85.7
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 1.7e-82 310.1 191 88.0
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 4.9e-82 308.5 192 86.5
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 8.4e-82 307.8 221 77.4
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 8.4e-82 307.8 193 84.5
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 1.4e-81 307.0 193 85.5
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-81 307.0 195 82.1
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 1.9e-81 306.6 201 79.6
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 1.9e-81 306.6 202 82.7
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.5e-81 306.2 191 86.9
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 4.2e-81 305.4 194 86.1
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 7.1e-81 304.7 194 85.1
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 9.3e-81 304.3 199 82.4
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 1.2e-80 303.9 193 87.6
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 1.6e-80 303.5 194 84.0
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 2.1e-80 303.1 199 81.9
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.7e-80 302.8 201 80.6
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 7.9e-80 301.2 193 85.0
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 1.8e-79 300.1 201 82.6
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 5.1e-79 298.5 194 83.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-78 297.0 192 77.6
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 2.5e-78 296.2 205 80.5
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 4.3e-78 295.4 193 81.9
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 3.7e-77 292.4 193 84.5
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 4.8e-77 292.0 196 83.2
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 3.1e-76 289.3 192 83.9
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 6.9e-76 288.1 194 81.4
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 6.9e-76 288.1 180 86.1
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.6e-75 286.2 247 61.9
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 7.6e-75 284.6 203 79.3
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 1.7e-74 283.5 208 76.9
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 8.5e-74 281.2 193 76.7
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 8.5e-74 281.2 175 84.6
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.1e-73 280.8 192 82.8
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 1.4e-73 280.4 222 72.5
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 5.5e-73 278.5 197 76.1
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 5.5e-73 278.5 197 76.1
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 7.2e-73 278.1 194 77.8
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 1.6e-72 276.9 206 76.7
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 4.6e-72 275.4 193 76.7
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 1.3e-71 273.9 166 90.4
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 3.9e-71 272.3 193 78.2
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 6.7e-71 271.6 178 85.4
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 8.7e-71 271.2 193 76.2
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 8.7e-71 271.2 188 78.7
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.1e-70 270.8 187 80.7
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.9e-70 270.0 193 75.6
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 2.5e-70 269.6 187 78.1
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.5e-70 269.6 199 75.4
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 1.3e-69 267.3 185 77.8
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 8.2e-69 264.6 192 78.1
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 1.1e-68 264.2 193 74.1
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 9.1e-68 261.2 187 75.9
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 3.4e-67 259.2 163 83.4
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 5.9e-67 258.5 179 79.3
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 7.7e-67 258.1 194 75.3
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 7.7e-67 258.1 153 94.1
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 3.2e-65 252.7 162 84.0
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 4.6e-64 248.8 195 72.8
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-63 247.3 172 80.8
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 1.1e-62 244.2 179 74.9
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 2.6e-62 243.0 197 63.5
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 1.3e-61 240.7 136 82.4
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.8e-61 239.6 198 69.2
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 8.2e-61 238.0 174 74.7
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 8.2e-61 238.0 193 64.8
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 1.1e-60 237.7 167 79.6
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 1.1e-60 237.7 151 87.4
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 4.5e-59 232.3 215 65.6
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 3.2e-57 226.1 143 74.8
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 1.6e-56 223.8 148 83.1
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 7.9e-56 221.5 177 69.5
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-55 220.7 136 78.7
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.8e-55 220.3 152 78.3
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.8e-55 220.3 192 62.5
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 3.0e-55 219.5 176 70.5
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.3e-53 214.2 182 66.5
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 6.3e-53 211.8 190 65.3
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 2.4e-52 209.9 184 62.0
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 1.6e-51 207.2 131 86.3
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.0e-50 204.5 177 67.8
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 1.3e-50 204.1 135 72.6
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 3.8e-50 202.6 201 56.2
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 3.8e-50 202.6 219 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 9.4e-49 198.0 191 61.3
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 2.7e-48 196.4 175 58.9
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 6.1e-48 195.3 171 61.4
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-47 194.5 173 64.2
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 1.0e-47 194.5 189 63.5
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.5e-46 190.7 186 59.1
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 2.0e-46 190.3 215 51.6
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 3.3e-46 189.5 180 60.6
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 9.7e-46 188.0 147 66.7
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 9.7e-46 188.0 136 69.9
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 4.8e-45 185.7 136 66.2
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 6.3e-45 185.3 176 62.5
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 1.1e-44 184.5 176 64.8
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.1e-44 184.5 194 59.3
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 2.4e-44 183.3 161 66.5
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 4.1e-44 182.6 165 68.5
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.6e-43 180.6 166 65.7
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.5e-41 174.1 133 62.4
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 2.3e-39 166.8 166 64.5
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 2.6e-38 163.3 136 72.8
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 5.7e-38 162.2 170 60.0
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.2e-37 160.2 160 54.4
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 4.8e-37 159.1 170 62.4
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 3.1e-36 156.4 158 53.8
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-35 154.5 134 61.2
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 2.0e-35 153.7 110 68.2
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-35 153.3 164 53.0
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-34 151.4 116 66.4
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 2.9e-34 149.8 159 53.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.9e-34 149.8 132 60.6
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 2.9e-34 149.8 113 69.0
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.6e-32 144.1 86 81.4
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.6e-32 142.9 390 33.8
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 1.8e-31 140.6 96 72.9
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 2.3e-31 140.2 86 79.1
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.5e-30 137.5 193 46.1
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 2.0e-30 137.1 133 63.9
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.5e-27 126.3 184 41.3
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 5.9e-27 125.6 74 81.1
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 6.6e-26 122.1 108 58.3
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.9e-25 120.6 90 64.4
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 9.5e-25 118.2 213 41.8
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-24 117.9 181 49.7
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 1.0e-23 114.8 84 65.5
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 1.5e-22 110.9 63 76.2
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 2.6e-22 110.2 97 60.8
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.4e-20 104.4 161 39.1
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.1e-20 102.8 113 47.8
Pp3c3_29270 Physcomitrium patens HOM05D003950 ORTHO05D004697 7.0e-20 102.1 210 41.9
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 3.5e-19 99.8 156 41.0
arahy.Tifrunner.gnm1.ann1.ZT0L0Q Arachis hypogaea HOM05D003950 ORTHO05D004697 3.3e-17 93.2 56 78.6
arahy.Tifrunner.gnm1.ann1.FD1PW0 Arachis hypogaea HOM05D000879 ORTHO05D004697 3.6e-16 89.7 56 75.0
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.8e-15 87.4 115 44.3
FvH4_3g41240 Fragaria vesca HOM05D003950 ORTHO05D004697 6.8e-15 85.5 86 54.7
FAN11G3220 Fragaria x ananassa HOM05D003950 ORTHO05D004697 6.8e-15 85.5 86 54.7
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 9.8e-14 81.6 75 53.3
Lsat_1_v5_gn_9_112501 Lactuca sativa HOM05D003950 ORTHO05D004697 9.8e-14 81.6 111 44.1
Gohir.A07G127733 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.4e-12 77.8 42 85.7
Cre13.g585250 Chlamydomonas reinhardtii HOM05D003950 ORTHO05D004697 4.6e-11 72.8 127 36.2
HanXRQChr11g0348271 Helianthus annuus HOM05D003950 ORTHO05D004697 1.7e-10 70.9 81 51.9
Manes.08G154400 Manihot esculenta HOM05D003950 ORTHO05D004697 2.3e-10 70.5 37 81.1
CBR_g23172 Chara braunii HOM05D003950 ORTHO05D004697 1.1e-09 68.2 109 39.4
arahy.Tifrunner.gnm1.ann1.1EL4AZ Arachis hypogaea HOM05D003175 ORTHO05D021464 1.5e-09 67.8 39 82.1
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.3e-09 66.2 184 31.0
SMO356G0208 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 2.8e-08 63.5 168 31.0
Sopen12g004960 Solanum pennellii HOM05D003419 ORTHO05D004113 1.1e-07 61.6 106 34.0
Pp3c8_19020 Physcomitrium patens HOM05D003950 ORTHO05D004697 2.3e-07 60.5 60 51.7
Manes.09G103400 Manihot esculenta HOM05D001221 ORTHO05D009285 4.0e-07 59.7 85 44.7
SEGI_15476 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 4.0e-07 59.7 112 39.3
PGSC0003DMG400036751 Solanum tuberosum HOM05D003419 ORTHO05D004113 8.9e-07 58.5 87 39.1
FAN12G1843 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.2e-06 58.2 83 42.2
Rhsim05G0207300 Rhododendron simsii HOM05D001221 ORTHO05D009285 1.2e-06 58.2 100 39.0
Thecc.03G281300 Theobroma cacao HOM05D001221 ORTHO05D006671 3.4e-06 56.6 105 32.4
ClCG08G009430 Citrullus lanatus HOM05D003419 ORTHO05D004113 4.4e-06 56.2 122 36.1
ECA247G4014 Erigeron canadensis HOM05D001221 ORTHO05D009285 5.8e-06 55.8 92 38.0
COL.COLO4_34488 Corchorus olitorius HOM05D001221 ORTHO05D006671 7.5e-06 55.5 110 31.8
SEGI_14882 Sequoiadendron giganteum HOM05D003419 ORTHO05D004113 9.9e-06 55.1 94 36.2
Solyc12g010080.1 Solanum lycopersicum HOM05D003419 ORTHO05D004113 9.9e-06 55.1 90 35.6


User provided reference genes

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