Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0046800 Rhododendron simsii HOM05D000097 ORTHO05D000041 5.9e-55 217.2 105 100.0
Rhsim03G0047000 Rhododendron simsii HOM05D000097 ORTHO05D000041 6.1e-44 180.6 114 80.7
Rhsim03G0047300 Rhododendron simsii HOM05D000097 ORTHO05D000041 8.8e-43 176.8 104 81.7
Rhsim03G0044400 Rhododendron simsii HOM05D000097 ORTHO05D000041 5.3e-40 167.5 104 79.8
Rhsim03G0047200 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.9e-35 151.4 107 72.9
Rhsim03G0047800 Rhododendron simsii HOM05D000097 ORTHO05D000041 2.4e-32 142.1 107 69.2
Rhsim03G0047400 Rhododendron simsii HOM05D000097 ORTHO05D000041 1.2e-31 139.8 107 70.1
Rhsim03G0104500 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.6e-28 128.3 107 59.8
Rhsim03G0102900 Rhododendron simsii HOM05D032117 ORTHO05D000041 4.0e-27 124.8 107 58.9
Rhsim03G0102500 Rhododendron simsii HOM05D000097 ORTHO05D000041 5.2e-27 124.4 107 58.9
Rhsim01G0084700 Rhododendron simsii HOM05D000097 ORTHO05D000041 1.5e-26 122.9 107 59.8
Rhsim03G0046600 Rhododendron simsii HOM05D000097 ORTHO05D000041 4.1e-24 114.8 95 63.2
vmacro07236 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 6.5e-22 107.5 106 52.8
Rhsim01G0121800 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.2e-21 105.1 110 49.1
vmacro07234 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 5.5e-21 104.4 107 52.3
Rhsim02G0235900 Rhododendron simsii HOM05D000097 ORTHO05D000041 5.2e-19 97.8 105 46.7
Dinv13268 Davidia involucrata HOM05D000097 ORTHO05D000041 9.8e-18 93.6 97 46.4
Dinv13272 Davidia involucrata HOM05D000097 ORTHO05D000041 1.4e-16 89.7 106 44.3
Rhsim03G0048500 Rhododendron simsii HOM05D000097 ORTHO05D000041 3.1e-16 88.6 107 53.3
Dinv13269 Davidia involucrata HOM05D000097 ORTHO05D000041 5.4e-16 87.8 107 42.1
Dinv09586 Davidia involucrata HOM05D000097 ORTHO05D013593 3.5e-15 85.1 114 42.1
Dinv00959 Davidia involucrata HOM05D000097 ORTHO05D000041 1.3e-14 83.2 123 37.4
Dinv13260 Davidia involucrata HOM05D000097 ORTHO05D000041 3.8e-14 81.6 122 36.9
Dinv13270 Davidia involucrata HOM05D002148 ORTHO05D013593 3.8e-14 81.6 116 40.5
Dinv13259 Davidia involucrata HOM05D000097 ORTHO05D000041 5.0e-14 81.3 105 45.7
Dinv13278 Davidia involucrata HOM05D000097 ORTHO05D000041 5.0e-14 81.3 105 45.7
Lj6A388G43 Lonicera japonica HOM05D000097 ORTHO05D000041 8.5e-14 80.5 97 42.3
Dinv03804 Davidia involucrata HOM05D000097 ORTHO05D000041 1.5e-13 79.7 144 35.4
Dinv13264 Davidia involucrata HOM05D014049 ORTHO05D013593 1.9e-13 79.3 111 38.7
Dinv02040 Davidia involucrata HOM05D000097 ORTHO05D000041 2.5e-13 79.0 112 40.2
Dinv07199 Davidia involucrata HOM05D000097 ORTHO05D000041 2.5e-13 79.0 112 38.4
Dinv23999 Davidia involucrata HOM05D000097 ORTHO05D000041 2.5e-13 79.0 113 36.3
Lj6A386G19 Lonicera japonica HOM05D014049 ORTHO05D000001 5.5e-13 77.8 97 42.3
Lj3C929T0 Lonicera japonica HOM05D000097 ORTHO05D000041 9.5e-13 77.0 101 37.6
Lsat_1_v5_gn_1_43320 Lactuca sativa HOM05D000097 ORTHO05D000041 6.1e-12 74.3 99 41.4
vmacro10270 Vaccinium macrocarpon HOM05D000097 ORTHO05D013593 1.0e-11 73.6 95 38.9
Dinv00709 Davidia involucrata HOM05D000097 ORTHO05D000041 1.4e-11 73.2 121 34.7
Dinv09594 Davidia involucrata HOM05D000097 ORTHO05D000041 1.8e-11 72.8 119 39.5
Lj6A385G50 Lonicera japonica HOM05D000097 ORTHO05D000041 1.8e-11 72.8 97 41.2
vmacro10274 Vaccinium macrocarpon HOM05D000097 ORTHO05D000041 3.0e-11 72.0 108 37.0
Dinv15019 Davidia involucrata HOM05D000097 ORTHO05D000041 5.2e-11 71.2 111 33.3
ECA248G1065 Erigeron canadensis HOM05D000097 ORTHO05D000041 6.8e-11 70.9 104 37.5
Dinv02036 Davidia involucrata HOM05D000097 ORTHO05D000041 2.0e-10 69.3 118 36.4
HanXRQChr02g0047401 Helianthus annuus HOM05D000097 ORTHO05D000041 2.0e-10 69.3 116 35.3
Peaxi162Scf00226g00923 Petunia axillaris HOM05D000097 ORTHO05D000041 2.0e-10 69.3 99 37.4
COL.COLO4_14937 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.6e-10 68.9 110 34.5
Dinv09595 Davidia involucrata HOM05D000097 ORTHO05D000041 2.6e-10 68.9 119 37.8
Hma1.2p1_1497F.1_g287050 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.6e-10 68.9 108 35.2
Hma1.2p1_2656F.1_g326340 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.6e-10 68.9 108 35.2
Peaxi162Scf00226g00936 Petunia axillaris HOM05D000097 ORTHO05D000041 2.6e-10 68.9 94 38.3
Rhsim07G0241200 Rhododendron simsii HOM05D000097 ORTHO05D000041 2.6e-10 68.9 125 36.0
Nitab4.5_0003025g0010 Nicotiana tabacum HOM05D000097 ORTHO05D000041 4.4e-10 68.2 91 39.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.8e-10 67.0 52 65.4
ECA238G4427 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.3e-09 66.6 114 33.3
Hma1.2p1_1497F.1_g287070 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.3e-09 66.6 108 36.1
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.3e-09 66.6 113 32.7
Dinv10726 Davidia involucrata HOM05D000097 ORTHO05D000041 2.2e-09 65.9 110 35.5
Dinv23993 Davidia involucrata HOM05D000097 ORTHO05D000041 2.2e-09 65.9 113 34.5
ECA236G2161 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.2e-09 65.9 113 36.3
HanXRQChr01g0028891 Helianthus annuus HOM05D000097 ORTHO05D000041 2.2e-09 65.9 92 34.8
HanXRQChr13g0394051 Helianthus annuus HOM05D000097 ORTHO05D000041 2.2e-09 65.9 118 33.9
Hma1.2p1_2243F.1_g317900 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 2.2e-09 65.9 108 34.3
ECA236G3757 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.8e-09 65.5 113 36.3
HanXRQChr09g0244201 Helianthus annuus HOM05D000097 ORTHO05D000041 2.8e-09 65.5 97 37.1
COL.COLO4_13671 Corchorus olitorius HOM05D000002 ORTHO05D000001 3.7e-09 65.1 106 32.1
ECA248G3700 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.7e-09 65.1 100 39.0
HanXRQChr16g0512561 Helianthus annuus HOM05D000097 ORTHO05D000041 3.7e-09 65.1 106 33.0
Dinv11854 Davidia involucrata HOM05D000097 ORTHO05D000041 4.9e-09 64.7 120 33.3
Rhsim02G0236000 Rhododendron simsii HOM05D000097 ORTHO05D000041 4.9e-09 64.7 58 51.7
Lsat_1_v5_gn_6_85720 Lactuca sativa HOM05D000097 ORTHO05D000041 6.3e-09 64.3 110 34.5
ECA236G1642 Erigeron canadensis HOM05D000006 ORTHO05D000091 1.1e-08 63.5 112 33.0
ECA248G0893 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.1e-08 63.5 97 36.1
Hma1.2p1_2656F.1_g326290 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 1.1e-08 63.5 108 33.3
AUR62002676 Chenopodium quinoa HOM05D000002 ORTHO05D000047 1.4e-08 63.2 98 32.7
ECA238G0255 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.4e-08 63.2 99 34.3
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.4e-08 63.2 111 33.3
Rhsim05G0150500 Rhododendron simsii HOM05D000097 ORTHO05D338935 1.8e-08 62.8 61 59.0
AUR62026338 Chenopodium quinoa HOM05D000002 ORTHO05D000047 2.4e-08 62.4 91 35.2
COL.COLO4_06456 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.4e-08 62.4 107 31.8
Peaxi162Scf00226g00820 Petunia axillaris HOM05D000097 ORTHO05D000041 3.1e-08 62.0 121 31.4
AUR62019749 Chenopodium quinoa HOM05D000002 ORTHO05D000047 4.1e-08 61.6 91 35.2
Lsat_1_v5_gn_1_85600 Lactuca sativa HOM05D000097 ORTHO05D000041 4.1e-08 61.6 107 31.8
Ah.09g236260 Amaranthus hybridus HOM05D000002 ORTHO05D000001 5.4e-08 61.2 92 35.9
HanXRQChr10g0282351 Helianthus annuus HOM05D000097 ORTHO05D017907 5.4e-08 61.2 87 40.2
Rhsim02G0101900 Rhododendron simsii HOM05D000002 ORTHO05D000001 5.4e-08 61.2 105 31.4
HanXRQChr11g0353571 Helianthus annuus HOM05D000097 ORTHO05D000041 9.2e-08 60.5 97 36.1
ECA247G0481 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.2e-07 60.1 105 34.3
Thhalv10027425m.g Eutrema salsugineum HOM05D000002 ORTHO05D000047 1.2e-07 60.1 103 31.1
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.2e-07 60.1 106 28.3
CSS0003715 Camellia sinensis var. sinensis HOM05D000097 ORTHO05D000041 1.6e-07 59.7 96 32.3
Dinv02034 Davidia involucrata HOM05D000097 ORTHO05D000041 1.6e-07 59.7 118 33.1
HanXRQChr17g0553721 Helianthus annuus HOM05D000097 ORTHO05D000041 1.6e-07 59.7 116 31.0
Atru.chr7.1131 Acer truncatum HOM05D000002 ORTHO05D000001 2.0e-07 59.3 106 32.1
ECA240G0142 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.0e-07 59.3 78 38.5
Ca_09781_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000047 2.7e-07 58.9 105 32.4
Hma1.2p1_2653F.1_g326190 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 2.7e-07 58.9 78 34.6
Lsat_1_v5_gn_7_37621 Lactuca sativa HOM05D000097 ORTHO05D000041 2.7e-07 58.9 101 35.6
Ah.15g098910 Amaranthus hybridus HOM05D000002 ORTHO05D000001 3.5e-07 58.5 79 31.6
AUR62038837 Chenopodium quinoa HOM05D000002 ORTHO05D000047 4.5e-07 58.2 91 33.0
Hma1.2p1_1761F.1_g301270 Hydrangea macrophylla HOM05D000097 ORTHO05D000041 4.5e-07 58.2 118 33.9
Lsat_1_v5_gn_7_39281 Lactuca sativa HOM05D000097 ORTHO05D000041 4.5e-07 58.2 116 33.6
Ah.09g228960 Amaranthus hybridus HOM05D000002 ORTHO05D000047 5.9e-07 57.8 88 30.7
Lsat_1_v5_gn_7_48860 Lactuca sativa HOM05D000097 ORTHO05D000041 5.9e-07 57.8 110 31.8
Ah.04g154970 Amaranthus hybridus HOM05D000002 ORTHO05D000001 7.7e-07 57.4 105 28.6
COL.COLO4_20536 Corchorus olitorius HOM05D000002 ORTHO05D000001 7.7e-07 57.4 107 25.2
Dinv03005 Davidia involucrata HOM05D000097 ORTHO05D000041 7.7e-07 57.4 112 31.2
Lsat_1_v5_gn_0_25401 Lactuca sativa HOM05D000097 ORTHO05D000041 7.7e-07 57.4 79 38.0
Lsat_1_v5_gn_4_140740 Lactuca sativa HOM05D000097 ORTHO05D000041 7.7e-07 57.4 104 34.6
Rhsim10G0061700 Rhododendron simsii HOM05D002460 ORTHO05D000047 7.7e-07 57.4 99 29.3
VMungo0720G2776 Vigna mungo HOM05D000087 ORTHO05D000439 7.7e-07 57.4 106 32.1
Ah.11g041540 Amaranthus hybridus HOM05D000002 ORTHO05D000047 1.0e-06 57.0 88 29.5
HanXRQChr08g0223211 Helianthus annuus HOM05D000097 ORTHO05D000041 1.0e-06 57.0 104 34.6
Lju99C0T4 Lonicera japonica HOM05D014049 ORTHO05D013593 1.0e-06 57.0 89 33.7
Lju99C2G6 Lonicera japonica HOM05D000097 ORTHO05D000041 1.0e-06 57.0 87 34.5
Rhsim04G0056500 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.0e-06 57.0 114 28.9
Rhsim05G0175500 Rhododendron simsii HOM05D000244 ORTHO05D000047 1.0e-06 57.0 83 31.3
Rhsim10G0073800 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.0e-06 57.0 83 31.3
Ah.10g035860 Amaranthus hybridus HOM05D000002 ORTHO05D000047 1.3e-06 56.6 111 27.9
Ciclev10013389m.g Citrus clementina HOM05D014049 ORTHO05D000001 1.3e-06 56.6 96 30.2
Thhalv10015469m.g Eutrema salsugineum HOM05D000002 ORTHO05D000047 1.3e-06 56.6 77 31.2
Nn8g40014 Nelumbo nucifera HOM05D000002 ORTHO05D000047 1.7e-06 56.2 112 29.5
Rhsim10G0196500 Rhododendron simsii HOM05D000002 ORTHO05D000047 1.7e-06 56.2 91 31.9
SGA_v2.0_scaffold91G28110 Striga asiatica HOM05D000097 ORTHO05D000041 1.7e-06 56.2 76 34.2
Ah.05g179170 Amaranthus hybridus HOM05D000002 ORTHO05D000047 2.3e-06 55.8 111 27.9
Ah.08g219750 Amaranthus hybridus HOM05D000002 ORTHO05D000047 2.3e-06 55.8 80 33.8
Dinv02033 Davidia involucrata HOM05D000097 ORTHO05D000041 2.3e-06 55.8 115 33.9
ECA240G4269 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.3e-06 55.8 111 33.3
HanXRQChr04g0112371 Helianthus annuus HOM05D000002 ORTHO05D000047 2.3e-06 55.8 100 27.0
HanXRQChr13g0394641 Helianthus annuus HOM05D000097 ORTHO05D000041 2.3e-06 55.8 101 33.7
Rhsim07G0243100 Rhododendron simsii HOM05D000097 ORTHO05D000041 2.3e-06 55.8 128 31.2
AUR62027612 Chenopodium quinoa HOM05D000002 ORTHO05D000047 2.9e-06 55.5 92 29.3
Dinv14517 Davidia involucrata HOM05D000097 ORTHO05D000041 2.9e-06 55.5 73 37.0
HanXRQChr10g0282341 Helianthus annuus HOM05D000097 ORTHO05D000041 2.9e-06 55.5 87 37.9
Lj6A388G44 Lonicera japonica HOM05D000097 ORTHO05D000041 2.9e-06 55.5 76 39.5
MD05G1298000 Malus domestica HOM05D000002 ORTHO05D000001 2.9e-06 55.5 80 30.0
TPR.G8542 Trifolium pratense HOM05D000688 ORTHO05D005697 2.9e-06 55.5 78 32.1
Ah.09g230030 Amaranthus hybridus HOM05D000002 ORTHO05D000047 3.8e-06 55.1 88 31.8
Ah.13g066630 Amaranthus hybridus HOM05D000002 ORTHO05D000047 3.8e-06 55.1 112 25.9
Ah.13g070650 Amaranthus hybridus HOM05D000002 ORTHO05D000047 3.8e-06 55.1 91 29.7
AUR62006236 Chenopodium quinoa HOM05D000002 ORTHO05D000047 3.8e-06 55.1 91 31.9
Dinv06773 Davidia involucrata HOM05D000097 ORTHO05D000041 3.8e-06 55.1 45 53.3
HanXRQChr12g0365581 Helianthus annuus HOM05D000002 ORTHO05D000047 3.8e-06 55.1 104 29.8
Lsat_1_v5_gn_7_39020 Lactuca sativa HOM05D000097 ORTHO05D000041 3.8e-06 55.1 117 33.3
Sopen11g023580 Solanum pennellii HOM05D000002 ORTHO05D000047 3.8e-06 55.1 100 30.0
AUR62021488 Chenopodium quinoa HOM05D000002 ORTHO05D000047 5.0e-06 54.7 110 28.2
Migut.L01556 Erythranthe guttata HOM05D000097 ORTHO05D000041 5.0e-06 54.7 116 32.8
Manes.14G029767 Manihot esculenta HOM05D000002 ORTHO05D000047 5.0e-06 54.7 74 32.4
Manes.17G044450 Manihot esculenta HOM05D000002 ORTHO05D000047 5.0e-06 54.7 74 32.4
Rhsim10G0064300 Rhododendron simsii HOM05D000912 ORTHO05D001232 5.0e-06 54.7 83 28.9
Sabra05G0155500 Salix brachista HOM05D000002 ORTHO05D000047 5.0e-06 54.7 79 38.0
Sabra15G0064300 Salix brachista HOM05D000002 ORTHO05D000047 5.0e-06 54.7 79 38.0
Ah.03g140010 Amaranthus hybridus HOM05D000002 ORTHO05D000047 6.6e-06 54.3 79 30.4
Ah.03g143770 Amaranthus hybridus HOM05D000002 ORTHO05D000001 6.6e-06 54.3 98 30.6
Ah.09g230280 Amaranthus hybridus HOM05D000002 ORTHO05D000047 6.6e-06 54.3 79 30.4
Ah.14g082800 Amaranthus hybridus HOM05D000002 ORTHO05D000047 6.6e-06 54.3 105 28.6
ECA247G3079 Erigeron canadensis HOM05D000097 ORTHO05D000041 6.6e-06 54.3 104 32.7
Nitab4.5_0003104g0060 Nicotiana tabacum HOM05D000097 ORTHO05D000041 6.6e-06 54.3 90 31.1
Sopen03g032090 Solanum pennellii HOM05D000002 ORTHO05D000001 6.6e-06 54.3 91 31.9
CANSAT35G1796 Cannabis sativa HOM05D000002 ORTHO05D000047 8.6e-06 53.9 82 37.8
Hma1.2p1_1412F.1_g281790 Hydrangea macrophylla HOM05D000002 ORTHO05D000047 8.6e-06 53.9 83 30.1
Manes.16G065850 Manihot esculenta HOM05D000002 ORTHO05D000047 8.6e-06 53.9 74 31.1
Sopen07g007010 Solanum pennellii HOM05D000002 ORTHO05D000001 8.6e-06 53.9 91 31.9


User provided reference genes

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