Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0042300 Rhododendron simsii HOM05D006707 ORTHO05D008243 8.3e-161 571.6 330 100.0
RhsimUnG0239000 Rhododendron simsii HOM05D006707 ORTHO05D008243 6.2e-132 475.7 286 98.6
RhsimUnG0220600 Rhododendron simsii HOM05D006707 ORTHO05D008243 5.8e-122 442.6 269 98.5
Actinidia25143 Actinidia chinensis HOM05D006707 ORTHO05D008243 5.0e-89 333.2 276 78.6
Dinv07298 Davidia involucrata HOM05D006707 ORTHO05D008243 1.5e-85 321.6 286 73.1
Dinv27614 Davidia involucrata HOM05D006707 ORTHO05D008243 8.2e-84 315.8 280 74.3
Lj5P156T67 Lonicera japonica HOM05D006707 ORTHO05D008243 1.2e-77 295.4 295 67.1
GSVIVG01016661001 Vitis vinifera HOM05D006707 ORTHO05D008243 2.0e-77 294.7 284 68.7
Nn4g24204 Nelumbo nucifera HOM05D006707 ORTHO05D008243 4.4e-77 293.5 267 73.0
TAR622G1063 Trochodendron aralioides HOM05D006707 ORTHO05D008243 3.1e-75 287.3 260 73.1
QL11p013929 Quercus lobata HOM05D006707 ORTHO05D008243 4.1e-75 287.0 275 65.1
QL11p014448 Quercus lobata HOM05D006707 ORTHO05D008243 2.0e-74 284.6 271 64.9
Cfa019000 Carpinus fangiana HOM05D006707 ORTHO05D008243 2.9e-73 280.8 284 68.0
Manes.06G007500 Manihot esculenta HOM05D006707 ORTHO05D008243 8.5e-73 279.3 288 66.7
Haze_21123 Corylus avellana HOM05D006707 ORTHO05D008243 2.5e-72 277.7 284 66.9
Potri.015G039300 Populus trichocarpa HOM05D006707 ORTHO05D008243 6.1e-71 273.1 280 66.1
Prupe.5G232400 Prunus persica HOM05D006707 ORTHO05D008243 5.2e-70 270.0 296 62.5
Sabra15G0070700 Salix brachista HOM05D006707 ORTHO05D008243 1.7e-68 265.0 276 65.6
Sabra15G0038500 Salix brachista HOM05D006707 ORTHO05D008243 1.1e-67 262.3 258 69.0
Sabra15G0069900 Salix brachista HOM05D006707 ORTHO05D008243 3.1e-67 260.8 276 65.2
Lj5A157G52 Lonicera japonica HOM05D006707 ORTHO05D008243 5.4e-67 260.0 249 70.7
Sabra15G0057600 Salix brachista HOM05D006707 ORTHO05D008243 5.4e-67 260.0 276 64.5
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 7.0e-67 259.6 274 63.5
Oeu010709.1 Olea europaea HOM05D006707 ORTHO05D008243 1.6e-66 258.5 296 61.8
FvH4_5g17250 Fragaria vesca HOM05D006707 ORTHO05D008243 2.0e-66 258.1 262 65.6
FAN18G2052 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.0e-66 258.1 262 65.6
CiPaw.15G142400 Carya illinoinensis HOM05D006707 ORTHO05D008243 3.5e-66 257.3 295 62.4
EL10Ac3g06722 Beta vulgaris HOM05D006707 ORTHO05D008243 5.9e-66 256.5 260 66.9
Sc10g0004790 Simmondsia chinensis HOM05D006707 ORTHO05D008243 1.7e-65 255.0 272 66.2
CsaV3_1G004300 Cucumis sativus L. HOM05D006707 ORTHO05D008243 2.3e-65 254.6 262 67.9
PSO478G5041 Papaver somniferum HOM05D006707 ORTHO05D008243 6.6e-65 253.1 273 67.0
Solyc03g118790.3 Solanum lycopersicum HOM05D006707 ORTHO05D008243 1.1e-64 252.3 294 60.9
Sopen03g037740 Solanum pennellii HOM05D006707 ORTHO05D008243 1.1e-64 252.3 294 60.9
FAN08G3326 Fragaria x ananassa HOM05D006707 ORTHO05D008243 2.5e-64 251.1 262 65.3
CAN.G1129.54 Capsicum annuum HOM05D006707 ORTHO05D008243 3.3e-64 250.8 260 67.3
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 5.5e-64 250.0 246 56.1
TWI81G0630 Tripterygium wilfordii HOM05D006707 ORTHO05D008243 1.2e-63 248.8 262 68.7
AUR62035349 Chenopodium quinoa HOM05D006707 ORTHO05D008243 1.6e-63 248.4 297 59.9
ClCG06G014360 Citrullus lanatus HOM05D006707 ORTHO05D008243 2.8e-63 247.7 262 66.4
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.8e-63 247.7 281 62.6
RcHm_v2.0_Chr7g0178541 Rosa chinensis HOM05D006707 ORTHO05D008243 4.0e-62 243.8 290 60.0
AUR62035893 Chenopodium quinoa HOM05D006707 ORTHO05D008243 6.8e-62 243.0 281 60.5
PGSC0003DMG400005747 Solanum tuberosum HOM05D006707 ORTHO05D008243 6.8e-62 243.0 294 58.5
Peaxi162Scf00683g00048 Petunia axillaris HOM05D006707 ORTHO05D008243 8.9e-62 242.7 271 62.0
COL.COLO4_35387 Corchorus olitorius HOM05D006707 ORTHO05D008243 7.5e-61 239.6 260 59.6
Migut.I00309 Erythranthe guttata HOM05D006707 ORTHO05D008243 7.5e-61 239.6 290 59.7
Thecc.03G054200 Theobroma cacao HOM05D006707 ORTHO05D008243 9.8e-61 239.2 260 58.8
MSTRG.16972 Avicennia marina HOM05D006707 ORTHO05D008243 1.3e-60 238.8 297 59.6
HPP92_007817 Vanilla planifolia HOM05D006707 ORTHO05D008243 1.3e-60 238.8 273 49.8
Nitab4.5_0001456g0170 Nicotiana tabacum HOM05D006707 ORTHO05D008243 2.8e-60 237.7 277 61.4
SalBow6G7169 Salvia bowleyana HOM05D006707 ORTHO05D008243 2.8e-60 237.7 271 62.0
Sed0000825 Sechium edule HOM05D006707 ORTHO05D008243 4.9e-60 236.9 292 59.6
AL3G31170 Arabidopsis lyrata HOM05D006707 ORTHO05D008243 5.4e-59 233.4 267 62.2
DCAR_014733 Daucus carota HOM05D006707 ORTHO05D008243 7.0e-59 233.0 258 64.0
Thhalv10020183m.g Eutrema salsugineum HOM05D006707 ORTHO05D008243 7.0e-59 233.0 267 62.5
Aa31LG8G4870 Aethionema arabicum HOM05D006707 ORTHO05D008243 1.2e-58 232.3 267 62.9
Ah.04g153500 Amaranthus hybridus HOM05D006707 ORTHO05D008243 2.0e-58 231.5 260 64.2
BraA05t22012Z Brassica rapa HOM05D006707 ORTHO05D008243 4.5e-58 230.3 267 62.9
BcaB06g25867 Brassica carinata HOM05D006707 ORTHO05D008243 7.8e-58 229.6 267 62.5
A05p31810 Brassica napus HOM05D006707 ORTHO05D008243 7.8e-58 229.6 267 62.2
Cc04_g06350 Coffea canephora HOM05D006707 ORTHO05D008243 1.0e-57 229.2 296 59.1
Duzib205G0649 Durio zibethinus HOM05D006707 ORTHO05D008243 1.0e-57 229.2 278 54.3
C05p48280 Brassica napus HOM05D006707 ORTHO05D008243 1.3e-57 228.8 267 62.5
THA.LOC104820351 Tarenaya hassleriana HOM05D006707 ORTHO05D008243 1.3e-57 228.8 267 62.9
CARHR093330 Cardamine hirsuta HOM05D006707 ORTHO05D008243 1.7e-57 228.4 267 62.2
BcaC05g28725 Brassica carinata HOM05D006707 ORTHO05D008243 2.9e-57 227.6 267 61.4
BolC5t33562H Brassica oleracea HOM05D006707 ORTHO05D008243 2.9e-57 227.6 267 61.4
Lsat_1_v5_gn_6_99620 Lactuca sativa HOM05D006707 ORTHO05D008243 3.9e-57 227.3 286 58.7
AT3G18020 Arabidopsis thaliana HOM05D006707 ORTHO05D008243 6.6e-57 226.5 267 61.0
Carub.0003s1773 Capsella rubella HOM05D006707 ORTHO05D008243 6.6e-57 226.5 267 60.7
Sp3g16130 Schrenkiella parvula HOM05D006707 ORTHO05D008243 8.6e-57 226.1 267 62.2
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 5.6e-56 223.4 251 64.9
Hund22248 Selenicereus undatus HOM05D006707 ORTHO05D008243 6.1e-55 219.9 253 62.8
Eucgr.K02270 Eucalyptus grandis HOM05D006707 ORTHO05D008243 1.0e-54 219.2 275 59.3
Cpa.g.sc3.405 Carica papaya HOM05D006707 ORTHO05D008243 3.4e-53 214.2 236 63.6
SGA_v2.0_scaffold192G40603 Striga asiatica HOM05D006707 ORTHO05D008243 4.9e-52 210.3 284 55.3
CANSAT11G1044 Cannabis sativa HOM05D006707 ORTHO05D008243 8.3e-52 209.5 225 67.6
Ca_07699_v3 Cicer arietinum L. HOM05D006707 ORTHO05D000099 3.9e-49 200.7 215 67.9
Medtr7g070420 Medicago truncatula HOM05D006707 ORTHO05D008243 1.1e-48 199.1 220 66.8
CDE07G1516 Ceratophyllum demersum HOM05D006707 ORTHO05D008243 3.6e-47 194.1 268 57.8
Glyma.18G207800 Glycine max HOM05D006707 ORTHO05D008243 2.3e-46 191.4 216 68.5
Psat3g124000 Pisum sativum HOM05D006707 ORTHO05D008243 3.1e-46 191.0 215 67.0
Lj1g0019371 Lotus japonicus HOM05D006707 ORTHO05D008243 6.8e-46 189.9 216 66.2
TPR.G37093 Trifolium pratense HOM05D006707 ORTHO05D008243 6.8e-46 189.9 223 65.5
Phvul.010G093200 Phaseolus vulgaris HOM05D006707 ORTHO05D008243 2.6e-45 188.0 222 64.9
VMungo1383G0390 Vigna mungo HOM05D006707 ORTHO05D008243 5.8e-45 186.8 222 64.9
Atru.BG.186.p Acer truncatum HOM05D006707 ORTHO05D008243 7.5e-45 186.4 218 67.9
TPR.G35815 Trifolium pratense HOM05D006707 ORTHO05D008243 3.7e-44 184.1 220 64.5
Haze_18837 Corylus avellana HOM05D006707 ORTHO05D008243 7.0e-43 179.9 160 58.8
PGR044G0521 Punica granatum HOM05D006707 ORTHO05D008243 3.5e-42 177.6 230 61.7
HanXRQChr10g0279071 Helianthus annuus HOM05D006707 ORTHO05D008243 2.3e-41 174.9 273 52.4
PSO017G3187 Papaver somniferum HOM05D006707 ORTHO05D008243 3.0e-41 174.5 157 58.0
ATR0564G450 Amborella trichopoda HOM05D006707 ORTHO05D008243 1.5e-40 172.2 294 52.0
Lalb_Chr04g0260761 Lupinus albus HOM05D006707 ORTHO05D008243 1.2e-39 169.1 224 58.9
arahy.Tifrunner.gnm1.ann1.72MQAV Arachis hypogaea HOM05D000449 ORTHO05D008243 6.4e-36 156.8 218 60.1
arahy.Tifrunner.gnm1.ann1.U18B68 Arachis hypogaea HOM05D000449 ORTHO05D008243 3.2e-35 154.5 218 60.1
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 9.2e-35 152.9 218 59.6
SEGI_24072 Sequoiadendron giganteum HOM05D006707 ORTHO05D008243 1.7e-33 148.7 254 53.5
QL11p014441 Quercus lobata HOM05D006707 ORTHO05D008243 5.4e-27 127.1 105 65.7
Rhsim03G0043000 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.4e-21 107.8 55 90.9
CSS0017365 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 5.1e-17 94.0 59 76.3
CSS0026236 Camellia sinensis var. sinensis HOM05D006707 ORTHO05D008243 5.1e-17 94.0 59 76.3
Ciclev10024364m.g Citrus clementina HOM05D006707 ORTHO05D008243 1.3e-15 89.4 68 61.8
ECA246G2801 Erigeron canadensis HOM05D006707 ORTHO05D008243 1.5e-13 82.4 67 56.7
Os07g0674300 Oryza sativa ssp. japonica HOM05D006707 ORTHO05D008243 4.5e-13 80.9 223 30.5
arahy.Tifrunner.gnm1.ann1.55ENF0 Arachis hypogaea HOM05D006707 ORTHO05D008243 5.8e-13 80.5 141 34.0
PSO017G4261 Papaver somniferum HOM05D006707 ORTHO05D008243 2.2e-12 78.6 48 75.0
HanXRQChr10g0277831 Helianthus annuus HOM05D006707 ORTHO05D008243 1.3e-09 69.3 160 27.5
Zm00001eb111370 Zea mays HOM05D006707 ORTHO05D008243 2.3e-09 68.6 228 25.4
RhsimUnG0220500 Rhododendron simsii HOM05D006707 ORTHO05D008243 3.0e-09 68.2 31 96.8
Ca_08161_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 6.7e-09 67.0 89 32.6
Ca_17107_v3 Cicer arietinum L. HOM05D002007 ORTHO05D000355 6.7e-09 67.0 89 32.6
FAN13G2143 Fragaria x ananassa HOM05D006707 ORTHO05D008243 4.3e-08 64.3 48 62.5
TPR.G2559 Trifolium pratense HOM05D002007 ORTHO05D000355 1.1e-06 59.7 85 29.4
Psat5g122600 Pisum sativum HOM05D002007 ORTHO05D000355 1.8e-06 58.9 85 28.2
Lj6g0020415 Lotus japonicus HOM05D002007 ORTHO05D000355 2.4e-06 58.5 82 30.5
Lalb_Chr15g0084821 Lupinus albus HOM05D002007 ORTHO05D000355 3.1e-06 58.2 85 30.6
Medtr3g067670 Medicago truncatula HOM05D002007 ORTHO05D000355 4.0e-06 57.8 85 29.4
TPR.G32438 Trifolium pratense HOM05D002007 ORTHO05D000355 4.0e-06 57.8 85 27.1
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 9.0e-06 56.6 122 29.5


User provided reference genes

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