Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0015400 Rhododendron simsii HOM05D008219 ORTHO05D009356 7.2e-150 533.9 269 100.0
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.6e-86 320.9 200 79.0
Rhsim07G0230400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.4e-84 317.0 161 97.5
RhsimUnG0052900 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.1e-72 275.0 184 75.0
Rhsim10G0184600 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.1e-71 271.9 175 77.1
Rhsim02G0133000 Rhododendron simsii HOM05D008219 ORTHO05D009356 3.5e-27 126.3 77 72.7
Actinidia11796 Actinidia chinensis HOM05D002604 ORTHO05D009356 2.8e-24 116.7 205 38.5
Actinidia34556 Actinidia chinensis HOM05D008219 ORTHO05D009356 8.3e-21 105.1 116 44.8
Rhsim04G0033200 Rhododendron simsii HOM05D007376 ORTHO05D001590 1.1e-20 104.8 61 86.9
RhsimUnG0050500 Rhododendron simsii HOM05D007376 ORTHO05D001590 1.1e-20 104.8 61 86.9
RhsimUnG0145500 Rhododendron simsii HOM05D007376 ORTHO05D001590 1.1e-20 104.8 61 86.9
Rhsim09G0042800 Rhododendron simsii HOM05D017214 ORTHO05D018100 3.2e-20 103.2 146 39.7
Rhsim07G0052100 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.6e-19 100.9 154 39.0
RhsimUnG0058200 Rhododendron simsii HOM05D007376 ORTHO05D007523 1.6e-19 100.9 61 83.6
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 5.9e-19 99.0 83 56.6
RhsimUnG0025400 Rhododendron simsii HOM05D007376 ORTHO05D001590 5.9e-19 99.0 61 82.0
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 3.9e-18 96.3 83 56.6
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 4.3e-17 92.8 198 32.3
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.5e-17 91.7 177 37.3
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 5.2e-15 85.9 161 33.5
Rhsim12G0049900 Rhododendron simsii HOM05D007376 ORTHO05D001590 3.4e-14 83.2 96 53.1
RhsimUnG0042600 Rhododendron simsii HOM05D007376 ORTHO05D001590 3.4e-14 83.2 96 53.1
Rhsim01G0127900 Rhododendron simsii HOM05D008219 ORTHO05D009356 9.8e-14 81.6 62 58.1
Rhsim11G0186100 Rhododendron simsii HOM05D008219 ORTHO05D009356 8.3e-13 78.6 39 94.9
CSS0043342 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 3.5e-11 73.2 127 33.9
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 3.5e-11 73.2 84 42.9
Actinidia24024 Actinidia chinensis HOM05D023450 ORTHO05D023249 4.6e-11 72.8 78 43.6
CSS0018658 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.0e-10 71.6 78 39.7
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.6e-10 68.9 80 36.2
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 6.6e-10 68.9 108 35.2
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 8.6e-10 68.6 105 37.1
Rhsim06G0146000 Rhododendron simsii HOM05D007376 ORTHO05D001590 1.5e-09 67.8 43 79.1
Rhsim10G0189500 Rhododendron simsii HOM05D019536 ORTHO05D011057 1.5e-09 67.8 95 32.6
CSS0016458 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.5e-09 67.0 97 30.9
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.5e-09 67.0 113 32.7
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 5.6e-09 65.9 78 38.5
CDE02G0935 Ceratophyllum demersum HOM05D004650 ORTHO05D005715 9.5e-09 65.1 94 37.2
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 9.5e-09 65.1 127 31.5
RhsimUnG0191000 Rhododendron simsii HOM05D007376 ORTHO05D338621 1.2e-08 64.7 42 73.8
CSS0025679 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.1e-08 63.9 115 38.3
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 2.1e-08 63.9 85 37.6
Rhsim04G0148100 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-08 63.5 83 44.6
SalBow3G4209 Salvia bowleyana HOM05D004650 ORTHO05D005715 2.8e-08 63.5 87 35.6
Actinidia15202 Actinidia chinensis HOM05D012898 ORTHO05D009356 3.6e-08 63.2 166 29.5
Ah.05g171570 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.6e-08 63.2 81 35.8
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 3.6e-08 63.2 137 28.5
CSS0042344 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 4.7e-08 62.8 140 30.0
CSS0000959 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 8.1e-08 62.0 68 44.1
vmacro12730 Vaccinium macrocarpon HOM05D002015 ORTHO05D011057 1.1e-07 61.6 78 37.2
Sc08g0000680 Simmondsia chinensis HOM05D004650 ORTHO05D005715 1.4e-07 61.2 77 37.7
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.8e-07 60.8 88 30.7
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 1.8e-07 60.8 125 30.4
Ah.02g117550 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.1e-07 60.1 131 28.2
Gohir.A01G136601 Gossypium hirsutum HOM05D000003 ORTHO05D015081 3.1e-07 60.1 78 38.5
Phvul.001G152700 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.1e-07 60.1 83 33.7
Phvul.002G198900 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 3.1e-07 60.1 83 33.7
CSS0020104 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 4.0e-07 59.7 51 47.1
Ah.06g183510 Amaranthus hybridus HOM05D008762 ORTHO05D011252 6.8e-07 58.9 88 31.8
Lsat_1_v5_gn_6_74401 Lactuca sativa HOM05D003915 ORTHO05D005386 6.8e-07 58.9 83 38.6
RhsimUnG0085900 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.8e-07 58.9 110 36.4
Sc21g0001740 Simmondsia chinensis HOM05D011136 ORTHO05D010856 6.8e-07 58.9 121 33.1
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.9e-07 58.5 78 33.3
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 1.2e-06 58.2 158 28.5
Os03g0801800 Oryza sativa ssp. japonica HOM05D004650 ORTHO05D005715 1.2e-06 58.2 77 32.5
Peaxi162Scf00016g00358 Petunia axillaris HOM05D004650 ORTHO05D005715 1.2e-06 58.2 72 36.1
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.2e-06 58.2 58 43.1
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 1.2e-06 58.2 131 30.5
Sc18g0002450 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.5e-06 57.8 72 37.5
Solyc01g109990.4 Solanum lycopersicum HOM05D004650 ORTHO05D005715 1.5e-06 57.8 72 36.1
Sopen01g052180 Solanum pennellii HOM05D004650 ORTHO05D005715 1.5e-06 57.8 72 36.1
PGSC0003DMG400030953 Solanum tuberosum HOM05D004650 ORTHO05D005715 1.5e-06 57.8 72 36.1
CBR_g28640 Chara braunii HOM05D006251 ORTHO05D007695 2.0e-06 57.4 85 32.9
Ah.05g173090 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.6e-06 57.0 63 38.1
Duzib106G0439 Durio zibethinus HOM05D003377 ORTHO05D004080 2.6e-06 57.0 89 36.0
Phvul.010G029500 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.6e-06 57.0 95 29.5
Sc01g0006920 Simmondsia chinensis HOM05D006933 ORTHO05D009629 2.6e-06 57.0 145 28.3
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 3.4e-06 56.6 97 30.9
DCAR_022968 Daucus carota HOM05D004122 ORTHO05D004468 3.4e-06 56.6 102 31.4
Lsat_1_v5_gn_6_47180 Lactuca sativa HOM05D003915 ORTHO05D001516 3.4e-06 56.6 84 33.3
Nitab4.5_0009512g0020 Nicotiana tabacum HOM05D004650 ORTHO05D005715 3.4e-06 56.6 72 34.7
Ah.11g045590 Amaranthus hybridus HOM05D000851 ORTHO05D003960 4.4e-06 56.2 93 33.3
Ah.15g100500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.4e-06 56.2 89 30.3
ATR0776G050 Amborella trichopoda HOM05D001873 ORTHO05D001976 4.4e-06 56.2 86 32.6
Gohir.A06G194460 Gossypium hirsutum HOM05D000003 ORTHO05D015081 4.4e-06 56.2 63 42.9
Gorai.009G210200 Gossypium raimondii HOM05D038512 ORTHO05D015081 4.4e-06 56.2 78 35.9
Lsat_1_v5_gn_6_73521 Lactuca sativa HOM05D003915 ORTHO05D005386 4.4e-06 56.2 71 36.6
Lsat_1_v5_gn_7_23940 Lactuca sativa HOM05D003915 ORTHO05D005386 4.4e-06 56.2 109 28.4
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.4e-06 56.2 145 27.6
Zm00001eb212720 Zea mays HOM05D004650 ORTHO05D005715 4.4e-06 56.2 77 33.8
CSS0043481 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 5.8e-06 55.8 97 33.0
Lsat_1_v5_gn_4_170561 Lactuca sativa HOM05D002777 ORTHO05D001516 5.8e-06 55.8 89 33.7
Nitab4.5_0003234g0030 Nicotiana tabacum HOM05D004650 ORTHO05D005715 5.8e-06 55.8 72 34.7
SEGI_08304 Sequoiadendron giganteum HOM05D001873 ORTHO05D001976 5.8e-06 55.8 77 33.8
Sc16g0003440 Simmondsia chinensis HOM05D006933 ORTHO05D009629 5.8e-06 55.8 71 35.2
Sc18g0000360 Simmondsia chinensis HOM05D009348 ORTHO05D030613 5.8e-06 55.8 83 32.5
TAR374G0307 Trochodendron aralioides HOM05D003145 ORTHO05D003586 5.8e-06 55.8 81 35.8
ATR0827G163 Amborella trichopoda HOM05D006251 ORTHO05D007695 7.5e-06 55.5 92 31.5
CSS0022791 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.5e-06 55.5 97 32.0
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.5e-06 55.5 97 32.0
Lj4g0027037 Lotus japonicus HOM05D002777 ORTHO05D001516 7.5e-06 55.5 198 26.8
Sc08g0005990 Simmondsia chinensis HOM05D006933 ORTHO05D009629 7.5e-06 55.5 90 31.1
Lsat_1_v5_gn_0_15061 Lactuca sativa HOM05D003915 ORTHO05D005386 9.9e-06 55.1 113 28.3
MBI19_g40868_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 9.9e-06 55.1 96 33.3
SMO119G0473 Selaginella moellendorffii HOM05D001873 ORTHO05D001976 9.9e-06 55.1 76 35.5
Sc12g0005710 Simmondsia chinensis HOM05D006933 ORTHO05D009629 9.9e-06 55.1 145 26.2


User provided reference genes

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