Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 6.6e-251 870.2 420 100.0
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 6.9e-224 780.4 447 84.8
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.3e-211 738.8 428 83.2
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 7.2e-205 717.2 421 81.2
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.8e-201 705.3 421 80.8
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 1.9e-189 666.0 421 75.3
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 2.6e-186 655.6 424 75.7
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 3.1e-184 648.7 421 74.3
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.7e-177 626.3 421 73.2
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.8e-176 622.9 420 72.4
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 2.7e-175 619.0 420 71.0
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 2.5e-173 612.5 420 71.7
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 5.6e-173 611.3 424 70.8
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 5.2e-171 604.7 422 68.7
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 2.6e-170 602.4 421 71.5
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 7.5e-170 600.9 421 71.0
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.3e-169 600.1 421 71.0
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.9e-169 599.0 422 69.7
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.7e-167 592.4 421 67.2
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 1.0e-166 590.5 420 69.8
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.7e-166 589.7 420 69.8
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 5.0e-166 588.2 414 68.4
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 7.3e-165 584.3 425 68.7
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.8e-164 582.4 422 65.4
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 2.8e-164 582.4 422 65.4
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 6.8e-163 577.8 422 66.8
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 7.5e-162 574.3 421 66.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 1.7e-161 573.2 422 63.5
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 2.9e-161 572.4 424 66.0
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 4.9e-161 571.6 419 67.3
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 6.4e-161 571.2 409 68.7
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 1.1e-160 570.5 427 66.0
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 1.4e-160 570.1 427 65.6
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 1.9e-160 569.7 420 65.7
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 2.4e-160 569.3 418 65.8
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 2.4e-160 569.3 421 63.9
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 4.1e-160 568.5 422 65.6
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 5.4e-160 568.2 418 67.7
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.1e-160 567.8 422 65.6
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 7.1e-160 567.8 419 65.4
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 9.2e-160 567.4 419 68.0
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 1.2e-159 567.0 427 64.4
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 3.5e-159 565.5 427 63.9
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 3.5e-159 565.5 422 64.5
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.6e-159 565.1 422 64.9
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 6.0e-159 564.7 422 65.2
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 7.8e-159 564.3 421 66.3
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.8e-159 564.3 422 64.9
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.7e-158 563.1 393 69.0
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 1.7e-158 563.1 419 64.7
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 2.3e-158 562.8 427 66.3
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 3.9e-158 562.0 416 64.4
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 3.9e-158 562.0 426 65.7
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.1e-158 561.6 421 65.1
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 8.6e-158 560.8 425 63.8
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 2.5e-157 559.3 421 66.0
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.5e-157 559.3 422 62.8
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.5e-157 559.3 421 62.9
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 4.3e-157 558.5 419 65.6
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.6e-157 558.1 420 64.5
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 1.6e-156 556.6 422 65.2
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 2.1e-156 556.2 429 63.6
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 8.1e-156 554.3 423 64.5
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 8.1e-156 554.3 427 61.8
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.8e-155 553.1 423 64.3
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 5.2e-155 551.6 423 64.8
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 5.8e-154 548.1 421 64.6
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 9.9e-154 547.4 466 59.4
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 9.9e-154 547.4 420 64.3
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.7e-153 546.6 497 56.9
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 2.9e-153 545.8 415 64.6
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 4.9e-153 545.0 421 64.4
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.1e-152 543.9 393 65.9
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 2.7e-151 539.3 426 62.4
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.7e-151 539.3 419 63.2
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.0e-150 537.3 423 64.1
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 1.7e-150 536.6 393 66.7
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.7e-150 536.6 419 63.0
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 1.5e-149 533.5 420 61.7
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 2.5e-149 532.7 469 58.0
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 1.6e-148 530.0 416 62.3
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 3.6e-148 528.9 525 53.7
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 6.2e-148 528.1 400 64.8
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 1.8e-147 526.6 392 64.5
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 3.1e-147 525.8 530 53.0
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 9.9e-146 520.8 421 58.9
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 2.9e-145 519.2 421 61.3
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 4.9e-145 518.5 420 57.9
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 6.4e-145 518.1 422 60.2
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 1.1e-144 517.3 425 60.0
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 1.6e-143 513.5 409 61.4
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 3.0e-142 509.2 422 60.7
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 7.3e-141 504.6 455 54.9
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 6.2e-140 501.5 341 71.8
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 6.2e-140 501.5 341 71.8
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.2e-138 497.3 372 66.4
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 3.4e-138 495.7 416 59.1
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.4e-136 490.3 422 57.6
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.3e-134 483.0 419 57.5
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 8.1e-132 474.6 419 57.3
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 5.3e-131 471.9 420 56.7
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 9.0e-131 471.1 422 55.5
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 9.0e-131 471.1 423 55.6
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.6e-130 469.5 467 51.4
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 2.9e-129 466.1 422 55.0
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 1.4e-128 463.8 449 51.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 6.0e-127 458.4 422 54.0
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 6.0e-127 458.4 422 54.0
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 7.9e-127 458.0 419 53.7
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 1.8e-126 456.8 422 54.0
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 1.8e-110 403.7 421 52.7
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.3e-110 403.3 422 51.7
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 6.3e-108 395.2 444 47.3
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 6.9e-107 391.7 445 45.6
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 7.7e-106 388.3 416 46.9
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 5.5e-104 382.1 416 47.6
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.9e-99 365.2 284 63.0
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.9e-97 359.8 273 63.7
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 1.4e-94 350.9 422 46.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.4e-93 345.1 170 91.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.3e-85 319.7 425 40.9
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.6e-79 299.7 141 92.2
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.0e-74 283.9 144 88.9
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.5e-74 282.7 149 82.6
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 3.6e-71 273.1 539 32.8
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 6.8e-54 215.7 121 75.2
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.0e-49 201.8 91 92.3
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.0e-49 201.8 200 50.0
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 8.1e-39 165.6 233 44.2
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.8e-30 137.9 73 89.0
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.8e-30 137.9 73 89.0
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 2.4e-30 137.5 81 74.1
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 1.9e-27 127.9 66 83.3
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.6e-24 116.3 147 46.3
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 2.1e-23 114.4 59 81.4
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 6.9e-22 109.4 66 77.3
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.3e-17 95.1 74 66.2
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 8.7e-17 92.4 180 33.9
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 7.4e-16 89.4 62 71.0
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 3.7e-15 87.0 75 60.0


User provided reference genes

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