Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 8.0e-28 126.3 62 100.0
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.3e-13 77.4 45 80.0
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.2e-12 73.6 40 85.0
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.2e-10 69.3 39 79.5
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.6e-10 68.2 40 70.0
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 5.8e-10 67.0 56 60.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 7.5e-10 66.6 39 71.8
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 7.5e-10 66.6 40 72.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.3e-09 65.9 39 74.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.3e-09 65.9 37 83.8
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.7e-09 65.5 40 67.5
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 2.2e-09 65.1 39 76.9
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.2e-09 65.1 39 69.2
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 2.9e-09 64.7 39 71.8
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 2.9e-09 64.7 39 71.8
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 3.7e-09 64.3 38 68.4
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 8.3e-09 63.2 39 71.8
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 8.3e-09 63.2 39 71.8
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-08 62.8 39 74.4
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.1e-08 62.8 39 66.7
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.4e-08 62.4 39 69.2
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.9e-08 62.0 39 66.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.2e-08 61.2 61 50.8
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.2e-08 61.2 39 74.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.2e-08 61.2 40 67.5
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.2e-08 61.2 41 70.7
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.1e-08 60.8 44 61.4
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 5.4e-08 60.5 56 60.7
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 5.4e-08 60.5 37 70.3
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 7.1e-08 60.1 38 68.4
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 7.1e-08 60.1 39 71.8
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 7.1e-08 60.1 35 68.6
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.2e-08 59.7 39 66.7
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.2e-07 59.3 39 69.2
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 1.2e-07 59.3 39 64.1
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.2e-07 59.3 39 71.8
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.2e-07 59.3 40 67.5
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.6e-07 58.9 37 70.3
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 1.6e-07 58.9 44 61.4
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.1e-07 58.5 40 67.5
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.1e-07 58.5 40 67.5
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 2.1e-07 58.5 56 55.4
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 2.7e-07 58.2 39 69.2
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 2.7e-07 58.2 37 67.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.7e-07 58.2 40 65.0
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.5e-07 57.8 40 67.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 3.5e-07 57.8 39 69.2
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.5e-07 57.8 40 67.5
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.5e-07 57.8 43 65.1
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 3.5e-07 57.8 39 69.2
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.5e-07 57.8 39 66.7
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 4.6e-07 57.4 40 65.0
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 4.6e-07 57.4 39 66.7
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 4.6e-07 57.4 39 61.5
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 6.0e-07 57.0 40 65.0
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 7.8e-07 56.6 39 64.1
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 7.8e-07 56.6 39 64.1
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.8e-07 56.6 40 67.5
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 7.8e-07 56.6 39 64.1
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 7.8e-07 56.6 40 65.0
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.0e-06 56.2 39 64.1
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.0e-06 56.2 44 59.1
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.0e-06 56.2 37 70.3
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.0e-06 56.2 35 68.6
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 1.0e-06 56.2 39 66.7
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.3e-06 55.8 35 65.7
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.7e-06 55.5 40 65.0
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.3e-06 55.1 38 65.8
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.3e-06 55.1 39 64.1
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 3.0e-06 54.7 39 64.1
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.9e-06 54.3 40 60.0
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.9e-06 54.3 36 66.7
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.1e-06 53.9 40 60.0
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 5.1e-06 53.9 39 66.7
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 5.1e-06 53.9 39 66.7
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 5.1e-06 53.9 40 62.5
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 6.6e-06 53.5 39 61.5
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 6.6e-06 53.5 39 61.5
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 6.6e-06 53.5 39 61.5
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 6.6e-06 53.5 33 72.7
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 6.6e-06 53.5 35 65.7
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 6.6e-06 53.5 40 60.0
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 6.6e-06 53.5 35 62.9
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 8.6e-06 53.1 38 63.2
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 8.6e-06 53.1 40 62.5
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 8.6e-06 53.1 40 62.5
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 8.6e-06 53.1 40 62.5
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 8.6e-06 53.1 40 62.5


User provided reference genes

Program Settings