Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0228600 Rhododendron simsii HOM05D004737 ORTHO05D005623 5.2e-93 344.4 171 100.0
vmacro11322 Vaccinium macrocarpon HOM05D004737 ORTHO05D005623 1.5e-84 316.2 171 88.3
CSS0013453 Camellia sinensis var. sinensis HOM05D004737 ORTHO05D005623 1.5e-79 299.7 171 84.8
Dinv38949 Davidia involucrata HOM05D004737 ORTHO05D005623 5.5e-79 297.7 169 85.2
Hma1.2p1_0896F.1_g233940 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 5.2e-77 291.2 169 82.2
Lj8A232T63 Lonicera japonica HOM05D004737 ORTHO05D005623 5.4e-74 281.2 168 78.6
GSVIVG01019762001 Vitis vinifera HOM05D004737 ORTHO05D005623 7.0e-74 280.8 164 81.7
QL12p034148 Quercus lobata HOM05D004737 ORTHO05D005623 5.9e-73 277.7 169 77.5
TAR625G0056 Trochodendron aralioides HOM05D004737 ORTHO05D005623 2.3e-72 275.8 167 78.4
QL12p033263 Quercus lobata HOM05D004737 ORTHO05D005623 2.9e-72 275.4 169 76.9
QL12p034065 Quercus lobata HOM05D004737 ORTHO05D005623 2.9e-72 275.4 169 76.9
TWI38G1747 Tripterygium wilfordii HOM05D004737 ORTHO05D005623 1.1e-71 273.5 169 75.7
Cc08_g14650 Coffea canephora HOM05D004737 ORTHO05D005623 3.3e-71 271.9 164 80.5
Potri.001G104800 Populus trichocarpa HOM05D004737 ORTHO05D005623 3.3e-71 271.9 169 74.6
QL12p034121 Quercus lobata HOM05D000005 ORTHO05D000833 9.5e-71 270.4 169 75.7
RcHm_v2.0_Chr7g0197851 Rosa chinensis HOM05D004737 ORTHO05D005623 9.5e-71 270.4 167 76.6
Duzib084G0936 Durio zibethinus HOM05D004737 ORTHO05D005623 2.8e-70 268.9 169 76.3
MD14G1103600 Malus domestica HOM05D004737 ORTHO05D005623 6.1e-70 267.7 164 78.7
EL10Ac6g13984 Beta vulgaris HOM05D004737 ORTHO05D005623 1.8e-69 266.2 162 77.2
CsaV3_5G002870 Cucumis sativus L. HOM05D004737 ORTHO05D005623 1.8e-69 266.2 162 77.8
Prupe.5G098900 Prunus persica HOM05D004737 ORTHO05D005623 2.3e-69 265.8 162 77.8
Nitab4.5_0001215g0220 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.2e-68 263.5 162 76.5
Nitab4.5_0010794g0020 Nicotiana tabacum HOM05D004737 ORTHO05D005623 1.2e-68 263.5 162 76.5
Manes.02G022400 Manihot esculenta HOM05D004737 ORTHO05D005623 2.0e-68 262.7 164 75.6
Thecc.03G277700 Theobroma cacao HOM05D004737 ORTHO05D005623 2.2e-67 259.2 187 68.4
SalBow5G1266 Salvia bowleyana HOM05D004737 ORTHO05D005623 6.4e-67 257.7 163 72.4
Sabra01G0079500 Salix brachista HOM05D004737 ORTHO05D005623 1.9e-66 256.1 204 62.7
AUR62010668 Chenopodium quinoa HOM05D004737 ORTHO05D005623 3.2e-66 255.4 163 73.6
Gohir.D08G200800 Gossypium hirsutum HOM05D004737 ORTHO05D005623 3.2e-66 255.4 162 74.1
Gorai.004G211600 Gossypium raimondii HOM05D004737 ORTHO05D005623 3.2e-66 255.4 162 74.1
AUR62017215 Chenopodium quinoa HOM05D004737 ORTHO05D005623 5.4e-66 254.6 163 73.0
MSTRG.25602 Avicennia marina HOM05D004737 ORTHO05D005623 7.0e-66 254.2 163 73.6
PGR042G1084 Punica granatum HOM05D004737 ORTHO05D005623 9.2e-66 253.8 170 72.4
MELO3C005669.2 Cucumis melo HOM05D004737 ORTHO05D005623 1.6e-65 253.1 162 74.7
Sed0019193 Sechium edule HOM05D004737 ORTHO05D005623 1.6e-65 253.1 162 75.3
SGA_v2.0_scaffold253G45138 Striga asiatica HOM05D004737 ORTHO05D005623 1.6e-65 253.1 164 71.3
Gohir.A08G182200 Gossypium hirsutum HOM05D004737 ORTHO05D005623 4.6e-65 251.5 162 72.8
Haze_08850 Corylus avellana HOM05D004737 ORTHO05D005623 1.0e-64 250.4 154 77.3
Haze_08864 Corylus avellana HOM05D004737 ORTHO05D005623 1.0e-64 250.4 154 77.3
Nn5g30495 Nelumbo nucifera HOM05D004737 ORTHO05D005623 5.0e-64 248.1 167 72.5
DCAR_008401 Daucus carota HOM05D004737 ORTHO05D005623 1.5e-63 246.5 154 77.3
Lsat_1_v5_gn_3_7380 Lactuca sativa HOM05D004737 ORTHO05D005623 2.5e-63 245.7 164 71.3
PGSC0003DMG400031232 Solanum tuberosum HOM05D004737 ORTHO05D005623 1.6e-62 243.0 162 72.2
COL.COLO4_34453 Corchorus olitorius HOM05D004737 ORTHO05D005623 2.8e-62 242.3 171 68.4
ECA246G0717 Erigeron canadensis HOM05D004737 ORTHO05D005623 3.6e-62 241.9 170 67.1
Solyc10g074990.2 Solanum lycopersicum HOM05D004737 ORTHO05D005623 4.7e-62 241.5 162 71.6
VMungo1215G1017 Vigna mungo HOM05D004737 ORTHO05D005623 1.1e-61 240.4 165 69.7
Sopen10g027480 Solanum pennellii HOM05D004737 ORTHO05D005623 1.4e-61 240.0 162 71.0
Eucgr.E00582 Eucalyptus grandis HOM05D004737 ORTHO05D005623 4.0e-61 238.4 163 70.6
ClCG01G002790 Citrullus lanatus HOM05D004737 ORTHO05D005623 6.8e-61 237.7 154 74.0
FvH4_5g02300 Fragaria vesca HOM05D004737 ORTHO05D005623 6.8e-61 237.7 165 70.9
HanXRQChr06g0165541 Helianthus annuus HOM05D004737 ORTHO05D005623 6.8e-61 237.7 170 65.9
Ah.02g116610 Amaranthus hybridus HOM05D000756 ORTHO05D000604 1.5e-60 236.5 151 74.8
Phvul.002G157400 Phaseolus vulgaris HOM05D004737 ORTHO05D005623 1.5e-60 236.5 167 68.9
Hma1.2p1_0896F.1_g233950 Hydrangea macrophylla HOM05D004737 ORTHO05D005623 2.6e-60 235.7 169 71.0
Peaxi162Scf00198g00034 Petunia axillaris HOM05D004737 ORTHO05D005623 3.4e-60 235.3 180 65.0
Lj2g0011086 Lotus japonicus HOM05D004737 ORTHO05D005623 4.4e-60 235.0 165 68.5
Aqoxy6G02772 Aquilegia oxysepala HOM05D004737 ORTHO05D005623 1.7e-59 233.0 166 68.1
Atru.chr2.2103 Acer truncatum HOM05D004737 ORTHO05D005623 8.3e-59 230.7 169 65.1
CANSAT21G0205 Cannabis sativa HOM05D004737 ORTHO05D005623 8.3e-59 230.7 163 66.9
Glyma.01G219700 Glycine max HOM05D004737 ORTHO05D005623 1.4e-58 229.9 169 66.9
CiPaw.11G135900 Carya illinoinensis HOM05D004737 ORTHO05D005623 1.9e-58 229.6 171 63.7
Actinidia14554 Actinidia chinensis HOM05D004737 ORTHO05D005623 9.2e-58 227.3 129 82.9
CDE04G2100 Ceratophyllum demersum HOM05D004737 ORTHO05D005623 1.2e-57 226.9 163 66.3
CAN.G1149.8 Capsicum annuum HOM05D004737 ORTHO05D005623 6.0e-57 224.6 168 64.9
TPR.G6698 Trifolium pratense HOM05D004737 ORTHO05D005623 1.7e-56 223.0 163 65.6
Ciclev10006013m.g Citrus clementina HOM05D004737 ORTHO05D005623 1.2e-54 216.9 154 66.9
BcaC02g09203 Brassica carinata HOM05D004737 ORTHO05D005623 4.7e-54 214.9 162 65.4
C04p40020 Brassica napus HOM05D004737 ORTHO05D005623 4.7e-54 214.9 162 65.4
BolC4t25575H Brassica oleracea HOM05D004737 ORTHO05D005623 4.7e-54 214.9 162 65.4
A04p06580 Brassica napus HOM05D004737 ORTHO05D005623 8.1e-54 214.2 162 65.4
BraA04t16363Z Brassica rapa HOM05D004737 ORTHO05D005623 8.1e-54 214.2 162 65.4
SHI07123 Sapria himalayana HOM05D004737 ORTHO05D005623 8.1e-54 214.2 166 62.0
arahy.Tifrunner.gnm1.ann1.1HA888 Arachis hypogaea HOM05D004737 ORTHO05D005623 1.1e-53 213.8 164 65.9
Lalb_Chr09g0321031 Lupinus albus HOM05D004737 ORTHO05D005623 1.4e-53 213.4 163 66.9
AL5G33690 Arabidopsis lyrata HOM05D004737 ORTHO05D005623 1.8e-53 213.0 164 63.4
Sp5g09430 Schrenkiella parvula HOM05D004737 ORTHO05D005623 4.0e-53 211.8 162 65.4
Thhalv10010768m.g Eutrema salsugineum HOM05D004737 ORTHO05D005623 5.2e-53 211.5 162 64.2
HPP92_015901 Vanilla planifolia HOM05D004737 ORTHO05D005623 6.8e-53 211.1 165 62.4
AT3G52905 Arabidopsis thaliana HOM05D004737 ORTHO05D005623 8.9e-53 210.7 162 63.0
BcaB02g08548 Brassica carinata HOM05D004737 ORTHO05D005623 2.6e-52 209.1 163 64.4
A07p21280 Brassica napus HOM05D004737 ORTHO05D005623 5.8e-52 208.0 163 63.8
BraA07t29816Z Brassica rapa HOM05D004737 ORTHO05D005623 5.8e-52 208.0 163 63.8
Carub.0005s1938 Capsella rubella HOM05D004737 ORTHO05D005623 5.8e-52 208.0 162 63.6
CARHR162770 Cardamine hirsuta HOM05D004737 ORTHO05D005623 5.8e-52 208.0 162 64.2
ATR0782G239 Amborella trichopoda HOM05D004737 ORTHO05D005623 1.7e-51 206.5 165 58.8
BcaC08g44605 Brassica carinata HOM05D004737 ORTHO05D005623 1.1e-50 203.8 165 63.0
C06p20780 Brassica napus HOM05D004737 ORTHO05D005623 1.1e-50 203.8 165 63.0
BolC6t37261H Brassica oleracea HOM05D004737 ORTHO05D005623 1.1e-50 203.8 165 63.0
THA.LOC104805035 Tarenaya hassleriana HOM05D004737 ORTHO05D005623 1.4e-50 203.4 171 59.1
SGA_v2.0_scaffold96G28950 Striga asiatica HOM05D004737 ORTHO05D005623 7.1e-50 201.1 163 61.3
Sc07g0009740 Simmondsia chinensis HOM05D004737 ORTHO05D005623 1.2e-49 200.3 124 77.4
Aa31LG10G7820 Aethionema arabicum HOM05D004737 ORTHO05D005623 7.8e-49 197.6 168 57.7
unitig_88.g27612 Utricularia gibba HOM05D004737 ORTHO05D005623 3.9e-48 195.3 163 55.8
arahy.Tifrunner.gnm1.ann1.4Y2W44 Arachis hypogaea HOM05D004737 ORTHO05D005623 3.3e-47 192.2 152 64.5
Os01g0764700 Oryza sativa ssp. japonica HOM05D004737 ORTHO05D005623 9.6e-47 190.7 166 60.2
Psat0s3411g0080 Pisum sativum HOM05D004737 ORTHO05D005623 1.3e-43 180.3 163 58.9
Migut.A00772 Erythranthe guttata HOM05D004737 ORTHO05D005623 1.1e-42 177.2 114 71.9
PSO675G2933 Papaver somniferum HOM05D004737 ORTHO05D005623 3.9e-40 168.7 180 50.0
PSO541G1514 Papaver somniferum HOM05D004737 ORTHO05D005623 1.5e-39 166.8 180 50.6
ECA246G4230 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.1e-37 160.6 162 48.1
Atru.chr11.10 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-35 152.9 178 44.4
Atru.chr2.774 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-33 147.1 179 41.3
Atru.chr6.144 Acer truncatum HOM05D004737 ORTHO05D005623 8.1e-30 134.4 177 42.4
Atru.chr6.77 Acer truncatum HOM05D004737 ORTHO05D005623 4.0e-29 132.1 177 42.9
BcaB02g07803 Brassica carinata HOM05D004737 ORTHO05D005623 7.6e-28 127.9 101 58.4
Glyma.11G023800 Glycine max HOM05D004737 ORTHO05D005623 1.3e-27 127.1 112 60.7
Atru.chr1.3074 Acer truncatum HOM05D004737 ORTHO05D005623 2.2e-27 126.3 188 37.8
Atru.chr1.3075 Acer truncatum HOM05D004737 ORTHO05D005623 3.8e-27 125.6 180 39.4
Atru.chr6.169 Acer truncatum HOM05D004737 ORTHO05D005623 7.1e-26 121.3 165 42.4
Atru.chr5.3476 Acer truncatum HOM05D004737 ORTHO05D005623 1.2e-25 120.6 175 42.3
Cpa.g.sc128.49 Carica papaya HOM05D004737 ORTHO05D005623 1.0e-24 117.5 70 80.0
SEGI_05186 Sequoiadendron giganteum HOM05D004737 ORTHO05D005623 1.3e-24 117.1 113 54.0
Atru.chr13.1520 Acer truncatum HOM05D004737 ORTHO05D005623 5.1e-24 115.2 186 37.6
Zm00001eb152210 Zea mays HOM05D004737 ORTHO05D005623 8.7e-24 114.4 108 59.3
Atru.chr1.4031 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-23 112.8 178 34.3
Atru.chr13.1180 Acer truncatum HOM05D004737 ORTHO05D005623 2.5e-23 112.8 175 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2040 Anthoceros agrestis HOM05D004737 ORTHO05D005623 9.6e-23 110.9 141 39.7
Eucgr.E00580 Eucalyptus grandis HOM05D004737 ORTHO05D005623 1.6e-22 110.2 67 71.6
Atru.chr2.781 Acer truncatum HOM05D004737 ORTHO05D005623 6.2e-22 108.2 164 35.4
Atru.chr1.4028 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-21 106.7 165 35.8
Pp3c24_17350 Physcomitrium patens HOM05D004737 ORTHO05D005623 2.4e-21 106.3 163 38.0
Atru.chr11.9 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-21 104.8 169 38.5
Psat2g182280 Pisum sativum HOM05D004737 ORTHO05D005623 6.9e-21 104.8 75 70.7
CBR_g78868 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-20 101.3 136 40.4
Atru.chr4.898 Acer truncatum HOM05D004737 ORTHO05D005623 1.0e-19 100.9 174 34.5
FAN04G3051 Fragaria x ananassa HOM05D004737 ORTHO05D005623 3.8e-19 99.0 112 52.7
ECA240G3910 Erigeron canadensis HOM05D004737 ORTHO05D005623 1.2e-17 94.0 164 32.3
Mapoly0022s0110 Marchantia polymorpha HOM05D004737 ORTHO05D005623 2.1e-17 93.2 138 37.0
Atru.chr1.3076 Acer truncatum HOM05D005378 ORTHO05D006986 2.3e-16 89.7 173 32.9
Atru.chr4.1971 Acer truncatum HOM05D004737 ORTHO05D005623 8.7e-16 87.8 166 30.7
Atru.chr2.779 Acer truncatum HOM05D004737 ORTHO05D005623 1.9e-15 86.7 181 30.9
Atru.chr8.895 Acer truncatum HOM05D004737 ORTHO05D005623 3.3e-15 85.9 177 34.5
ECA248G3864 Erigeron canadensis HOM05D004737 ORTHO05D005623 5.7e-15 85.1 153 31.4
Atru.chr4.1970 Acer truncatum HOM05D004737 ORTHO05D005623 7.4e-15 84.7 167 30.5
Atru.chr4.1967 Acer truncatum HOM05D004737 ORTHO05D005623 2.1e-14 83.2 113 39.8
Atru.chr12.1179 Acer truncatum HOM05D004737 ORTHO05D005623 4.8e-14 82.0 180 29.4
Atru.chr12.1697 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-13 80.1 158 32.3
Atru.chr5.3478 Acer truncatum HOM05D004737 ORTHO05D005623 1.8e-13 80.1 124 37.9
ECA240G0629 Erigeron canadensis HOM05D004737 ORTHO05D005623 2.4e-13 79.7 107 40.2
Atru.chr7.1970 Acer truncatum HOM05D004737 ORTHO05D005623 5.3e-13 78.6 147 33.3
Atru.chr6.95 Acer truncatum HOM05D004737 ORTHO05D005623 6.9e-13 78.2 111 39.6
Atru.chr12.1177 Acer truncatum HOM05D004737 ORTHO05D005623 2.6e-12 76.3 169 29.0
QL12p033469 Quercus lobata HOM05D004737 ORTHO05D005623 4.5e-12 75.5 45 77.8
Atru.chr8.1290 Acer truncatum HOM05D004737 ORTHO05D005623 7.6e-12 74.7 186 31.2
Atru.chr3.997 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-11 73.9 175 28.6
Atru.chr12.1688 Acer truncatum HOM05D004737 ORTHO05D005623 5.0e-11 72.0 131 31.3
Atru.chr1.4012 Acer truncatum HOM05D004737 ORTHO05D005623 8.4e-11 71.2 184 25.5
Atru.chr1.4019 Acer truncatum HOM05D002880 ORTHO05D005623 1.4e-10 70.5 103 40.8
Atru.chr12.1394 Acer truncatum HOM05D004737 ORTHO05D005623 6.1e-09 65.1 180 27.8
Atru.chr5.2738 Acer truncatum HOM05D004737 ORTHO05D005623 7.9e-09 64.7 126 31.0
Atru.chr7.1971 Acer truncatum HOM05D004737 ORTHO05D005623 1.3e-08 63.9 132 29.5
Medtr5g038850 Medicago truncatula HOM05D004737 ORTHO05D005623 1.1e-07 60.8 128 30.5
Atru.chr6.94 Acer truncatum HOM05D004737 ORTHO05D005623 9.7e-07 57.8 64 48.4
Dinv01344 Davidia involucrata HOM05D065005 ORTHO05D005623 8.2e-06 54.7 31 74.2


User provided reference genes

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