Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0161600 Rhododendron simsii HOM05D011344 ORTHO05D016379 0.0e+00 1114.4 551 100.0
Rhsim01G0153500 Rhododendron simsii HOM05D011344 ORTHO05D016379 9.0e-155 551.2 565 59.3
Rhsim01G0154300 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.0e-118 429.9 582 49.5
Rhsim05G0160000 Rhododendron simsii HOM05D011344 ORTHO05D016379 5.7e-101 372.5 447 49.7
Rhsim01G0159600 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.1e-99 366.3 304 69.4
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 2.5e-96 357.1 612 40.5
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.5e-90 336.7 655 38.3
Rhsim01G0159500 Rhododendron simsii HOM05D011344 ORTHO05D016379 7.3e-56 222.6 188 63.3
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 7.3e-40 169.5 303 38.3
RhsimUnG0167100 Rhododendron simsii HOM05D011344 ORTHO05D016379 6.2e-31 139.8 248 41.1
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 6.9e-30 136.3 225 38.2
Rhsim10G0115800 Rhododendron simsii HOM05D011344 ORTHO05D016379 5.8e-29 133.3 109 63.3
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 2.7e-26 124.4 163 38.7
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 6.0e-26 123.2 163 38.7
Rhsim09G0109800 Rhododendron simsii HOM05D007651 ORTHO05D000898 6.0e-26 123.2 163 38.0
Rhsim04G0115000 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.8e-25 121.7 163 37.4
Hma1.2p1_0381F.1_g139960 Hydrangea macrophylla HOM05D000011 ORTHO05D000018 1.1e-19 102.4 223 29.6
CSS0032349 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 5.5e-19 100.1 222 29.3
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.3e-17 94.7 222 28.8
Rhsim04G0060600 Rhododendron simsii HOM05D007651 ORTHO05D000898 2.5e-16 91.3 200 31.5
CSS0035836 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 5.7e-16 90.1 222 27.5
Dinv01422 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-15 89.0 222 27.9
RcHm_v2.0_Chr6g0266671 Rosa chinensis HOM05D004096 ORTHO05D000898 3.1e-14 84.3 193 24.9
Prupe.5G238300 Prunus persica HOM05D004096 ORTHO05D000898 6.9e-14 83.2 172 26.7
CANSAT01G2817 Cannabis sativa HOM05D007651 ORTHO05D001192 1.2e-13 82.4 218 27.5
Glyma.10G201800 Glycine max HOM05D007651 ORTHO05D000898 1.5e-13 82.0 227 28.6
Dinv13142 Davidia involucrata HOM05D008396 ORTHO05D000898 2.6e-13 81.3 159 29.6
Dinv14218 Davidia involucrata HOM05D008396 ORTHO05D000898 2.6e-13 81.3 192 27.6
Nn3g19299 Nelumbo nucifera HOM05D007651 ORTHO05D000898 5.9e-13 80.1 227 26.4
Dinv07106 Davidia involucrata HOM05D008396 ORTHO05D000898 1.7e-12 78.6 192 28.6
FAN09G2456 Fragaria x ananassa HOM05D004096 ORTHO05D010213 1.7e-12 78.6 162 26.5
Atru.chr8.438 Acer truncatum HOM05D004096 ORTHO05D000898 2.2e-12 78.2 161 25.5
Nitab4.5_0000901g0120 Nicotiana tabacum HOM05D007651 ORTHO05D001192 2.2e-12 78.2 217 26.7
CSS0025900 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.9e-12 77.8 195 25.1
FAN24G1944 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.9e-12 77.8 196 23.5
FAN12G1875 Fragaria x ananassa HOM05D004096 ORTHO05D000898 3.8e-12 77.4 173 28.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 6.5e-12 76.6 183 31.1
Lsat_1_v5_gn_2_81300 Lactuca sativa HOM05D007651 ORTHO05D000898 6.5e-12 76.6 225 26.2
Nitab4.5_0000625g0020 Nicotiana tabacum HOM05D007651 ORTHO05D001192 6.5e-12 76.6 217 26.3
MSTRG.3530 Avicennia marina HOM05D007651 ORTHO05D001192 8.5e-12 76.3 217 27.6
Migut.L00474 Erythranthe guttata HOM05D007651 ORTHO05D001192 8.5e-12 76.3 217 26.7
FvH4_2g09911 Fragaria vesca HOM05D004096 ORTHO05D000898 8.5e-12 76.3 196 23.0
FAN20G1880 Fragaria x ananassa HOM05D004096 ORTHO05D000898 8.5e-12 76.3 196 23.0
Peaxi162Scf00104g01921 Petunia axillaris HOM05D007651 ORTHO05D000898 8.5e-12 76.3 217 29.0
CAN.G11.14 Capsicum annuum HOM05D007651 ORTHO05D001192 1.1e-11 75.9 217 26.7
FvH4_5g19752 Fragaria vesca HOM05D004096 ORTHO05D000898 1.1e-11 75.9 186 25.8
FvH4_7g05770 Fragaria vesca HOM05D004096 ORTHO05D000898 1.1e-11 75.9 191 26.2
FvH4_7g12251 Fragaria vesca HOM05D004096 ORTHO05D000898 1.1e-11 75.9 191 26.2
Lsat_1_v5_gn_4_155061 Lactuca sativa HOM05D007651 ORTHO05D000898 1.1e-11 75.9 217 26.7
FAN18G0847 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.4e-11 75.5 173 27.2
Prupe.7G070100 Prunus persica HOM05D004096 ORTHO05D000898 1.4e-11 75.5 162 25.3
HanXRQChr11g0325241 Helianthus annuus HOM05D007651 ORTHO05D000898 1.9e-11 75.1 217 26.7
Atru.chr10.1446 Acer truncatum HOM05D004096 ORTHO05D000898 2.5e-11 74.7 217 25.8
ECA238G0783 Erigeron canadensis HOM05D007651 ORTHO05D000898 2.5e-11 74.7 225 26.2
Hma1.2p1_1820F.1_g304200 Hydrangea macrophylla HOM05D007651 ORTHO05D001192 2.5e-11 74.7 217 26.3
Actinidia17653 Actinidia chinensis HOM05D007651 ORTHO05D000898 3.2e-11 74.3 217 27.2
Dinv15468 Davidia involucrata HOM05D008396 ORTHO05D000898 3.2e-11 74.3 192 26.6
Atru.chr11.572 Acer truncatum HOM05D007651 ORTHO05D000898 4.2e-11 73.9 201 26.4
FAN13G2291 Fragaria x ananassa HOM05D004096 ORTHO05D000898 4.2e-11 73.9 210 24.3
SGA_v2.0_scaffold174G39280 Striga asiatica HOM05D007651 ORTHO05D000898 4.2e-11 73.9 217 27.6
COL.COLO4_10042 Corchorus olitorius HOM05D007651 ORTHO05D000898 5.5e-11 73.6 217 26.7
FAN27G1870 Fragaria x ananassa HOM05D004096 ORTHO05D000898 5.5e-11 73.6 196 23.0
Prupe.7G017400 Prunus persica HOM05D004096 ORTHO05D000898 5.5e-11 73.6 219 22.4
Sopen03g007480 Solanum pennellii HOM05D007651 ORTHO05D000898 5.5e-11 73.6 217 28.1
PGSC0003DMG400016690 Solanum tuberosum HOM05D007651 ORTHO05D000898 5.5e-11 73.6 217 28.1
Atru.chr13.1926 Acer truncatum HOM05D007651 ORTHO05D000898 7.2e-11 73.2 196 27.0
CiPaw.15G020600 Carya illinoinensis HOM05D007651 ORTHO05D001192 9.4e-11 72.8 254 26.0
Gohir.D06G186000 Gossypium hirsutum HOM05D007651 ORTHO05D000898 9.4e-11 72.8 217 26.7
HanXRQChr09g0262351 Helianthus annuus HOM05D007651 ORTHO05D000898 9.4e-11 72.8 217 27.2
Potri.004G091800 Populus trichocarpa HOM05D007651 ORTHO05D000898 9.4e-11 72.8 217 27.6
Solyc03g043600.3 Solanum lycopersicum HOM05D007651 ORTHO05D000898 9.4e-11 72.8 217 27.6
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 1.2e-10 72.4 217 28.6
MD09G1260400 Malus domestica HOM05D007651 ORTHO05D001192 1.6e-10 72.0 217 25.3
AUR62043619 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.1e-10 71.6 180 26.7
Dinv12671 Davidia involucrata HOM05D008396 ORTHO05D000898 2.7e-10 71.2 192 26.0
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 2.7e-10 71.2 217 26.7
GSVIVG01030888001 Vitis vinifera HOM05D007651 ORTHO05D001192 3.6e-10 70.9 217 26.7
Cpa.g.sc116.14 Carica papaya HOM05D007651 ORTHO05D001192 4.6e-10 70.5 217 25.8
Prupe.3G152100 Prunus persica HOM05D007651 ORTHO05D001192 4.6e-10 70.5 217 26.3
Thecc.10G176700 Theobroma cacao HOM05D007651 ORTHO05D001192 4.6e-10 70.5 217 27.2
Rhsim06G0089800 Rhododendron simsii HOM05D011344 ORTHO05D000415 6.1e-10 70.1 73 49.3
RcHm_v2.0_Chr6g0266661 Rosa chinensis HOM05D007993 ORTHO05D000898 7.9e-10 69.7 225 22.7
RcHm_v2.0_Chr7g0204351 Rosa chinensis HOM05D007993 ORTHO05D000898 7.9e-10 69.7 228 21.5
Atru.chr5.2180 Acer truncatum HOM05D004096 ORTHO05D000898 1.0e-09 69.3 217 25.3
Ciclev10011294m.g Citrus clementina HOM05D007651 ORTHO05D001192 1.0e-09 69.3 217 26.3
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.0e-09 69.3 271 24.7
QL02p048445 Quercus lobata HOM05D007651 ORTHO05D001192 1.0e-09 69.3 271 24.7
AUR62030114 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.4e-09 68.9 168 28.6
AUR62041478 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.4e-09 68.9 169 26.6
AUR62029710 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.8e-09 68.6 168 28.0
AUR62030713 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.8e-09 68.6 168 28.0
Dinv09269 Davidia involucrata HOM05D008396 ORTHO05D000898 1.8e-09 68.6 186 27.4
Dinv13152 Davidia involucrata HOM05D008396 ORTHO05D000898 1.8e-09 68.6 186 27.4
Duzib106G0239 Durio zibethinus HOM05D007651 ORTHO05D000898 1.8e-09 68.6 217 27.2
AUR62029050 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-09 68.2 168 27.4
AUR62030619 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.3e-09 68.2 177 28.2
Dinv17956 Davidia involucrata HOM05D008396 ORTHO05D000898 2.3e-09 68.2 155 27.7
Gorai.010G218300 Gossypium raimondii HOM05D007651 ORTHO05D000898 2.3e-09 68.2 217 27.6
AUR62035391 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.0e-09 67.8 168 28.0
Gohir.A06G176700 Gossypium hirsutum HOM05D007651 ORTHO05D000898 3.0e-09 67.8 220 27.3
Atru.chr1.1775 Acer truncatum HOM05D007651 ORTHO05D001192 3.9e-09 67.4 164 26.8
CSS0020998 Camellia sinensis var. sinensis HOM05D007651 ORTHO05D000898 3.9e-09 67.4 217 26.3
AUR62003872 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.9e-09 67.4 179 27.4
AUR62009195 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.9e-09 67.4 168 27.4
AUR62006070 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.1e-09 67.0 168 28.0
FAN22G2114 Fragaria x ananassa HOM05D004096 ORTHO05D000898 6.7e-09 66.6 191 24.1
Manes.03G097100 Manihot esculenta HOM05D007651 ORTHO05D001192 6.7e-09 66.6 217 24.9
AUR62034039 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-09 66.2 180 26.7
AUR62042613 Chenopodium quinoa HOM05D002461 ORTHO05D000898 8.8e-09 66.2 168 27.4
CiPaw.04G045400 Carya illinoinensis HOM05D007651 ORTHO05D001192 1.1e-08 65.9 271 24.4
AUR62033389 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-08 65.9 178 27.5
Rhsim08G0168100 Rhododendron simsii HOM05D007651 ORTHO05D002997 1.1e-08 65.9 108 35.2
AUR62006829 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.5e-08 65.5 168 27.4
AUR62028801 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 65.1 168 27.4
AUR62034174 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 65.1 180 25.6
AUR62038800 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.0e-08 65.1 180 26.1
THA.LOC104805598 Tarenaya hassleriana HOM05D007651 ORTHO05D000898 2.0e-08 65.1 230 24.3
AUR62005044 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-08 64.7 168 26.8
FAN06G1954 Fragaria x ananassa HOM05D004096 ORTHO05D000898 2.5e-08 64.7 144 29.9
AUR62043170 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.3e-08 64.3 179 25.7
Cc02_g32350 Coffea canephora HOM05D002461 ORTHO05D000898 3.3e-08 64.3 161 26.7
Sc18g0005800 Simmondsia chinensis HOM05D024065 ORTHO05D000898 3.3e-08 64.3 165 26.1
RhsimUnG0183100 Rhododendron simsii HOM05D000470 ORTHO05D009609 5.7e-08 63.5 66 51.5
AUR62037746 Chenopodium quinoa HOM05D002461 ORTHO05D000898 7.4e-08 63.2 180 25.6
AUR62011603 Chenopodium quinoa HOM05D002461 ORTHO05D000898 9.7e-08 62.8 168 27.4
AUR62035718 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.3e-07 62.4 168 26.8
Dinv08228 Davidia involucrata HOM05D008396 ORTHO05D000898 1.3e-07 62.4 184 26.6
FAN21G3088 Fragaria x ananassa HOM05D004096 ORTHO05D000898 1.7e-07 62.0 194 21.1
Rhsim01G0228300 Rhododendron simsii HOM05D000537 ORTHO05D000415 2.2e-07 61.6 242 25.6
AUR62014618 Chenopodium quinoa HOM05D000001 ORTHO05D009295 2.8e-07 61.2 174 25.9
AUR62011252 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.7e-07 60.8 168 26.2
FvH4_1g25481 Fragaria vesca HOM05D004096 ORTHO05D010213 3.7e-07 60.8 173 24.3
Sc12g0007730 Simmondsia chinensis HOM05D024065 ORTHO05D026145 3.7e-07 60.8 168 25.0
FAN17G1842 Fragaria x ananassa HOM05D008674 ORTHO05D000898 8.2e-07 59.7 209 23.4
Rhsim05G0139900 Rhododendron simsii HOM05D007651 ORTHO05D000898 8.2e-07 59.7 163 26.4
AUR62014786 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.1e-06 59.3 169 26.6
FvH4_2g25151 Fragaria vesca HOM05D004096 ORTHO05D010213 1.4e-06 58.9 160 22.5
AUR62033047 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.8e-06 58.5 161 27.3
AUR62025842 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.4e-06 58.2 191 25.1
Dinv33528 Davidia involucrata HOM05D007544 ORTHO05D009682 2.4e-06 58.2 227 22.5
AUR62035971 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.1e-06 57.8 181 25.4
Dinv09698 Davidia involucrata HOM05D007544 ORTHO05D009682 3.1e-06 57.8 227 22.5
Potri.010G214500 Populus trichocarpa HOM05D007651 ORTHO05D000898 3.1e-06 57.8 228 25.4
AUR62036132 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 57.0 140 27.1
AUR62036177 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.3e-06 57.0 165 27.3
Dinv10220 Davidia involucrata HOM05D008396 ORTHO05D000898 5.3e-06 57.0 201 25.9
AUR62017377 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-06 56.6 145 26.2
AUR62039695 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.9e-06 56.6 161 25.5
Dinv36340 Davidia involucrata HOM05D008396 ORTHO05D000898 6.9e-06 56.6 155 23.2
FvH4_5g33480 Fragaria vesca HOM05D004096 ORTHO05D046227 6.9e-06 56.6 241 25.3
Atru.chr1.1738 Acer truncatum HOM05D007651 ORTHO05D000898 9.1e-06 56.2 108 29.6


User provided reference genes

Program Settings