Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 2.8e-50 201.8 116 100.0
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 9.4e-46 186.8 116 91.4
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.6e-45 186.0 116 91.4
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 1.6e-45 186.0 116 90.5
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 4.6e-45 184.5 116 90.5
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 4.6e-45 184.5 116 90.5
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 1.0e-44 183.3 116 88.8
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.4e-44 183.0 116 89.7
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.8e-44 182.6 116 88.8
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 2.3e-44 182.2 116 89.7
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 88.8
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 3.9e-44 181.4 116 87.9
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.9e-44 181.4 116 88.8
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 3.9e-44 181.4 116 88.8
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 3.9e-44 181.4 116 89.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 8.8e-44 180.3 117 88.9
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.0e-43 179.1 116 86.2
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 3.3e-43 178.3 116 87.1
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 5.7e-43 177.6 116 85.3
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 9.7e-43 176.8 114 86.8
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 1.3e-42 176.4 116 87.1
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 1.7e-42 176.0 116 85.3
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.2e-42 175.6 117 86.3
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.2e-42 175.6 116 85.3
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 86.2
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 4.8e-42 174.5 116 85.3
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 4.8e-42 174.5 116 84.5
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 8.2e-42 173.7 114 85.1
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.1e-41 173.3 117 87.2
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.4e-41 172.9 116 85.3
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.8e-41 172.6 116 83.6
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.8e-41 172.6 116 84.5
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.8e-41 172.6 116 84.5
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.8e-41 172.6 116 82.8
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 2.4e-41 172.2 116 84.5
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 3.1e-41 171.8 117 85.5
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 3.1e-41 171.8 119 84.9
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 9.1e-41 170.2 117 83.8
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 9.1e-41 170.2 120 83.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 9.1e-41 170.2 118 83.1
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.2e-40 169.9 117 83.8
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.2e-40 169.9 116 81.9
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.2e-40 169.9 116 81.9
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.5e-40 169.5 112 85.7
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 1.5e-40 169.5 116 83.6
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.0e-40 169.1 137 74.5
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 2.0e-40 169.1 116 81.9
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-40 168.7 119 83.2
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 2.6e-40 168.7 120 82.5
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 3.4e-40 168.3 116 81.9
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 4.5e-40 167.9 116 81.9
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 7.7e-40 167.2 120 83.3
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 7.7e-40 167.2 120 80.8
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 1.0e-39 166.8 116 83.6
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.3e-39 166.4 116 81.9
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 1.3e-39 166.4 119 83.2
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 2.2e-39 165.6 116 80.2
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.2e-39 165.6 116 82.8
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 3.8e-39 164.9 119 82.4
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 5.0e-39 164.5 119 82.4
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 5.0e-39 164.5 119 82.4
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 5.0e-39 164.5 116 81.0
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 5.0e-39 164.5 114 79.8
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 6.5e-39 164.1 116 81.0
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 8.5e-39 163.7 114 79.8
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.9e-38 162.5 119 80.7
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.9e-38 162.5 116 81.0
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.9e-38 162.5 119 81.5
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 2.5e-38 162.2 117 80.3
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 3.2e-38 161.8 116 80.2
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 3.2e-38 161.8 114 78.1
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 4.2e-38 161.4 116 81.9
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 4.2e-38 161.4 117 79.5
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 9.4e-38 160.2 116 81.9
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 9.4e-38 160.2 117 82.1
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-37 159.5 116 79.3
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 1.6e-37 159.5 115 80.0
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.6e-37 159.5 152 66.4
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.6e-37 159.5 116 81.0
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 7.9e-37 157.1 119 78.2
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 7.9e-37 157.1 104 84.6
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.4e-36 156.4 112 81.2
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 2.3e-36 155.6 116 79.3
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 3.9e-36 154.8 116 81.0
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 6.7e-36 154.1 103 84.5
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 8.8e-36 153.7 110 80.0
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.8e-36 153.7 116 78.4
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 8.8e-36 153.7 117 81.2
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.1e-35 153.3 108 81.5
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.5e-35 152.9 110 79.1
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 2.0e-35 152.5 108 80.6
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 2.0e-35 152.5 108 81.5
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 2.0e-35 152.5 115 77.4
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 3.7e-34 148.3 89 93.3
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 8.2e-34 147.1 114 75.4
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.4e-33 146.4 116 76.7
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.4e-33 145.6 110 77.3
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 9.1e-33 143.7 119 76.5
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-32 143.3 114 74.6
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-32 142.1 119 76.5
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-32 142.1 119 76.5
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 5.9e-32 141.0 120 73.3
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 7.7e-32 140.6 114 72.8
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 7.7e-32 140.6 104 78.8
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.3e-31 139.8 142 63.4
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.3e-31 139.8 119 74.8
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 6.5e-31 137.5 82 93.9
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.9e-30 136.0 117 74.4
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.4e-30 133.7 119 73.1
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.6e-29 132.9 80 92.5
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.1e-29 132.5 94 79.8
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 1.8e-28 129.4 82 90.2
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 3.0e-28 128.6 116 67.2
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.5e-27 126.3 119 69.7
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.3e-27 125.2 116 67.2
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 5.7e-27 124.4 80 85.0
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 1.3e-26 123.2 80 86.2
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.7e-26 122.9 116 67.2
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.8e-26 122.1 83 83.1
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 2.0e-24 115.9 66 97.0
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 3.5e-24 115.2 81 81.5
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 1.7e-23 112.8 68 91.2
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 3.8e-23 111.7 81 76.5
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 6.5e-23 110.9 83 75.9
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 5.5e-22 107.8 116 62.1
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 7.2e-22 107.5 70 85.7
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 3.0e-20 102.1 119 54.6
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 5.2e-20 101.3 114 59.6
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 5.2e-20 101.3 68 83.8
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.0e-19 99.4 73 78.1
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 9.7e-19 97.1 83 63.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.8e-17 92.8 116 53.4
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 7.0e-17 90.9 54 92.6
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 7.0e-17 90.9 58 86.2
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 5.9e-16 87.8 54 90.7
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 8.5e-15 84.0 87 54.0
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 7.2e-14 80.9 75 72.0
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 5.2e-12 74.7 257 31.5
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 5.2e-12 74.7 110 47.3
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 4.8e-10 68.2 48 75.0
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 3.1e-09 65.5 48 72.9
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.5e-08 62.0 51 70.6
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 7.7e-08 60.8 48 75.0
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.3e-07 59.3 40 82.5


User provided reference genes

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