Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0053500 Rhododendron simsii HOM05D005405 ORTHO05D006333 0.0e+00 1507.3 785 100.0
vmacro15506 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 0.0e+00 1113.6 735 81.2
Rhsim02G0140000 Rhododendron simsii HOM05D005405 ORTHO05D006333 4.9e-223 778.5 567 77.2
CSS0043604 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 5.5e-214 748.4 769 57.5
Actinidia11394 Actinidia chinensis HOM05D005405 ORTHO05D006333 2.6e-208 729.6 802 56.0
Dinv38269 Davidia involucrata HOM05D005405 ORTHO05D006333 1.7e-183 647.1 787 53.0
CSS0036421 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 2.2e-162 577.0 619 54.9
CSS0015206 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 8.3e-162 575.1 619 54.8
vmacro23320 Vaccinium macrocarpon HOM05D005405 ORTHO05D006333 4.9e-138 496.1 836 43.4
RhsimUnG0181000 Rhododendron simsii HOM05D005405 ORTHO05D006333 3.8e-114 416.8 730 43.0
TAR362G0670 Trochodendron aralioides HOM05D005405 ORTHO05D006333 6.4e-114 416.0 663 44.9
QL06p023456 Quercus lobata HOM05D005405 ORTHO05D006333 2.1e-112 411.0 814 39.8
Haze_11572 Corylus avellana HOM05D005405 ORTHO05D006333 7.3e-110 402.5 823 39.7
Cfa014900 Carpinus fangiana HOM05D005405 ORTHO05D006333 1.8e-108 397.9 823 39.2
RhsimUnG0135700 Rhododendron simsii HOM05D005405 ORTHO05D006333 1.8e-108 397.9 711 42.1
Prupe.1G003200 Prunus persica HOM05D005405 ORTHO05D006333 5.1e-103 379.8 789 37.1
CiPaw.02G068100 Carya illinoinensis HOM05D005405 ORTHO05D006333 2.0e-99 367.9 567 45.9
TAR365G1216 Trochodendron aralioides HOM05D005405 ORTHO05D006333 2.6e-99 367.5 642 41.9
Sopen09g034410 Solanum pennellii HOM05D005405 ORTHO05D006333 5.8e-99 366.3 766 37.9
Solyc09g091480.4 Solanum lycopersicum HOM05D005405 ORTHO05D006333 1.6e-96 358.2 766 37.6
Atru.chr4.1776 Acer truncatum HOM05D005405 ORTHO05D006333 1.0e-95 355.5 793 37.6
Oeu022333.1 Olea europaea HOM05D005405 ORTHO05D006333 5.1e-95 353.2 780 37.1
Lj6A613T36 Lonicera japonica HOM05D005405 ORTHO05D006333 2.1e-93 347.8 732 39.5
DCAR_030784 Daucus carota HOM05D005405 ORTHO05D006333 6.2e-93 346.3 788 36.9
Nitab4.5_0003904g0030 Nicotiana tabacum HOM05D005405 ORTHO05D006333 1.8e-92 344.7 776 36.6
PGSC0003DMG400029647 Solanum tuberosum HOM05D005405 ORTHO05D006333 6.9e-92 342.8 770 36.9
MD04G1003700 Malus domestica HOM05D005405 ORTHO05D006333 1.5e-91 341.7 807 36.1
COL.COLO4_20311 Corchorus olitorius HOM05D005405 ORTHO05D006333 3.4e-91 340.5 779 36.8
Manes.15G050712 Manihot esculenta HOM05D005405 ORTHO05D006333 3.4e-91 340.5 787 36.7
Thecc.04G210400 Theobroma cacao HOM05D005405 ORTHO05D006333 7.6e-91 339.3 786 37.2
Nn1g03142 Nelumbo nucifera HOM05D005405 ORTHO05D006333 1.3e-90 338.6 722 37.8
Nn3g19905 Nelumbo nucifera HOM05D005405 ORTHO05D006333 1.1e-89 335.5 619 41.5
Nitab4.5_0002920g0020 Nicotiana tabacum HOM05D005405 ORTHO05D006333 2.5e-89 334.3 796 35.7
MSTRG.21949 Avicennia marina HOM05D005405 ORTHO05D006333 5.5e-89 333.2 602 41.5
Peaxi162Scf00047g01223 Petunia axillaris HOM05D005405 ORTHO05D006333 7.9e-88 329.3 854 35.5
RcHm_v2.0_Chr4g0385131 Rosa chinensis HOM05D005405 ORTHO05D006333 3.0e-87 327.4 747 35.5
Cc03_g07300 Coffea canephora HOM05D005405 ORTHO05D006333 8.7e-87 325.9 763 36.8
Duzib268G1063 Durio zibethinus HOM05D005405 ORTHO05D006333 2.2e-85 321.2 801 35.7
Gohir.A02G024600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.6e-83 314.3 781 35.3
FvH4_4g00300 Fragaria vesca HOM05D005405 ORTHO05D006333 7.7e-83 312.8 822 33.7
Gorai.005G035400 Gossypium raimondii HOM05D005405 ORTHO05D006333 2.2e-82 311.2 785 34.8
Gohir.D02G031900 Gossypium hirsutum HOM05D005405 ORTHO05D006333 5.5e-81 306.6 789 34.6
Aqoxy7G02749 Aquilegia oxysepala HOM05D005405 ORTHO05D006333 7.2e-81 306.2 783 35.5
Sabra03G0129300 Salix brachista HOM05D005405 ORTHO05D006333 2.1e-80 304.7 801 35.1
Potri.003G176500 Populus trichocarpa HOM05D005405 ORTHO05D006333 2.7e-80 304.3 800 34.8
Migut.N00342 Erythranthe guttata HOM05D005405 ORTHO05D006333 2.3e-79 301.2 766 35.5
ECA238G1203 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-78 298.9 769 35.6
FAN17G2022 Fragaria x ananassa HOM05D005405 ORTHO05D006333 3.7e-77 293.9 812 33.4
FAN17G2416 Fragaria x ananassa HOM05D005405 ORTHO05D006333 3.1e-76 290.8 856 32.4
Duzib151G0041 Durio zibethinus HOM05D005405 ORTHO05D006333 2.2e-74 284.6 790 35.4
Gohir.A09G202500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 2.5e-73 281.2 633 38.1
MBI10_g03399_MAGBIO Magnolia biondii HOM05D005405 ORTHO05D006333 2.1e-72 278.1 650 36.9
CANSAT78G2177 Cannabis sativa HOM05D005405 ORTHO05D006333 1.4e-71 275.4 737 34.1
Gorai.006G220000 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.5e-70 271.9 811 32.9
Gohir.D09G196500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 3.3e-70 270.8 809 33.6
Duzib268G1747 Durio zibethinus HOM05D005405 ORTHO05D006333 2.8e-69 267.7 779 34.4
Lalb_Chr03g0036631 Lupinus albus HOM05D005405 ORTHO05D006333 2.4e-68 264.6 767 35.7
MELO3C006332.2 Cucumis melo HOM05D005405 ORTHO05D006333 9.1e-68 262.7 802 33.5
Eucgr.H00089 Eucalyptus grandis HOM05D005405 ORTHO05D006333 1.7e-66 258.5 620 36.6
CsaV3_3G011210 Cucumis sativus L. HOM05D005405 ORTHO05D006333 5.0e-66 256.9 809 32.9
PGR142G3403 Punica granatum HOM05D005405 ORTHO05D006333 4.2e-65 253.8 594 37.7
Gohir.D10G144600 Gossypium hirsutum HOM05D005405 ORTHO05D006333 5.5e-65 253.4 888 30.6
Gorai.011G161600 Gossypium raimondii HOM05D005405 ORTHO05D006333 1.2e-64 252.3 886 30.9
Sabra01G0036300 Salix brachista HOM05D005405 ORTHO05D006333 1.2e-64 252.3 723 32.9
Glyma.20G076700 Glycine max HOM05D005405 ORTHO05D006333 6.1e-64 250.0 693 35.9
FAN12G1620 Fragaria x ananassa HOM05D005405 ORTHO05D006333 1.0e-63 249.2 751 32.0
Sed0022326 Sechium edule HOM05D005405 ORTHO05D006333 1.4e-63 248.8 820 32.2
Glyma.10G124600 Glycine max HOM05D005405 ORTHO05D006333 1.1e-62 245.7 757 33.9
Ca_11844_v3 Cicer arietinum L. HOM05D005405 ORTHO05D006333 1.3e-61 242.3 584 37.3
Cpa.g.sc59.99 Carica papaya HOM05D005405 ORTHO05D006333 6.3e-61 240.0 443 40.2
Phvul.007G236500 Phaseolus vulgaris HOM05D005405 ORTHO05D006333 8.2e-61 239.6 675 35.7
Gohir.A10G121500 Gossypium hirsutum HOM05D005405 ORTHO05D006333 7.0e-60 236.5 858 29.7
TPR.G11288 Trifolium pratense HOM05D005405 ORTHO05D006333 2.0e-59 235.0 675 35.4
Lj6g0005257 Lotus japonicus HOM05D001191 ORTHO05D006333 1.0e-58 232.6 696 33.8
Lalb_Chr19g0128851 Lupinus albus HOM05D005405 ORTHO05D006333 2.2e-58 231.5 609 36.6
SGA_v2.0_scaffold2G00820 Striga asiatica HOM05D005405 ORTHO05D006333 2.9e-58 231.1 449 39.6
CSS0016720 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 8.5e-58 229.6 161 72.0
HanXRQChr14g0435041 Helianthus annuus HOM05D005405 ORTHO05D006333 1.1e-57 229.2 605 35.9
Medtr1g047180 Medicago truncatula HOM05D005405 ORTHO05D006333 1.9e-57 228.4 680 34.0
VMungo0720G2049 Vigna mungo HOM05D005405 ORTHO05D006333 4.2e-57 227.3 743 32.4
Psat6g048040 Pisum sativum HOM05D005405 ORTHO05D006333 9.4e-57 226.1 703 34.3
arahy.Tifrunner.gnm1.ann1.6I3KXF Arachis hypogaea HOM05D005405 ORTHO05D006333 1.8e-55 221.9 457 38.7
ClCG05G003540 Citrullus lanatus HOM05D005405 ORTHO05D006333 3.8e-50 204.1 508 37.8
THA.LOC104816022 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 3.8e-50 204.1 674 32.0
Sed0004689 Sechium edule HOM05D005405 ORTHO05D006333 5.0e-50 203.8 802 30.0
EL10Ac7g18092 Beta vulgaris HOM05D005405 ORTHO05D006333 6.5e-50 203.4 648 32.9
PSO832G0957 Papaver somniferum HOM05D005405 ORTHO05D006333 6.5e-50 203.4 230 53.0
Lsat_1_v5_gn_2_43220 Lactuca sativa HOM05D005405 ORTHO05D006333 2.1e-48 198.4 782 30.9
ATR0787G170 Amborella trichopoda HOM05D005405 ORTHO05D006333 4.7e-48 197.2 556 33.3
CSS0040970 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 5.2e-47 193.7 204 57.8
Sp1g03630 Schrenkiella parvula HOM05D005405 ORTHO05D006333 2.0e-46 191.8 318 41.8
Lsat_1_v5_gn_1_72381 Lactuca sativa HOM05D005405 ORTHO05D006333 7.5e-46 189.9 745 29.1
AL1G14510 Arabidopsis lyrata HOM05D005405 ORTHO05D006333 1.3e-45 189.1 382 38.2
BraA10t42596Z Brassica rapa HOM05D005405 ORTHO05D006333 2.8e-45 188.0 562 31.9
PSO764G0275 Papaver somniferum HOM05D059662 ORTHO05D006333 6.3e-45 186.8 504 34.3
THA.LOC104801040 Tarenaya hassleriana HOM05D005405 ORTHO05D006333 1.1e-44 186.0 537 33.7
BolC5t29078H Brassica oleracea HOM05D005405 ORTHO05D006333 1.8e-44 185.3 595 31.9
CARHR004180 Cardamine hirsuta HOM05D005405 ORTHO05D006333 3.1e-44 184.5 376 40.4
AUR62025677 Chenopodium quinoa HOM05D005405 ORTHO05D006333 4.5e-43 180.6 540 33.7
Aa31LG1G20100 Aethionema arabicum HOM05D005405 ORTHO05D006333 5.9e-43 180.3 327 41.9
AT1G04790 Arabidopsis thaliana HOM05D005405 ORTHO05D006333 5.9e-43 180.3 386 38.9
BcaB02g06900 Brassica carinata HOM05D005405 ORTHO05D006333 5.9e-43 180.3 385 37.7
C05p02970 Brassica napus HOM05D005405 ORTHO05D006333 5.9e-43 180.3 595 31.4
BcaC05g24440 Brassica carinata HOM05D005405 ORTHO05D006333 7.7e-43 179.9 563 31.8
Hund18545 Selenicereus undatus HOM05D005405 ORTHO05D006333 1.7e-42 178.7 666 31.5
AUR62001292 Chenopodium quinoa HOM05D005405 ORTHO05D006333 1.9e-41 175.3 771 28.5
Thhalv10007101m.g Eutrema salsugineum HOM05D005405 ORTHO05D006333 3.3e-41 174.5 318 40.6
Carub.0001s0404 Capsella rubella HOM05D005405 ORTHO05D006333 8.0e-40 169.9 387 38.5
A10p03220 Brassica napus HOM05D005405 ORTHO05D006333 6.8e-39 166.8 561 30.5
Ah.08g218040 Amaranthus hybridus HOM05D005405 ORTHO05D006333 2.7e-35 154.8 728 29.7
GSVIVG01029065001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.7e-34 152.1 383 36.0
arahy.Tifrunner.gnm1.ann1.7RGD68 Arachis hypogaea HOM05D005405 ORTHO05D006333 1.1e-33 149.4 556 31.7
Ciclev10006228m.g Citrus clementina HOM05D005405 ORTHO05D006333 1.2e-32 146.0 103 73.8
Hund05655 Selenicereus undatus HOM05D005405 ORTHO05D006333 2.1e-32 145.2 385 37.1
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 8.0e-32 143.3 335 36.7
Ciclev10004706m.g Citrus clementina HOM05D005405 ORTHO05D006333 3.7e-29 134.4 612 29.6
Os04g0511600 Oryza sativa ssp. japonica HOM05D005405 ORTHO05D006333 6.4e-29 133.7 586 29.4
Lj3C583T4 Lonicera japonica HOM05D005405 ORTHO05D006333 7.8e-27 126.7 374 34.5
Pp3c2_17560 Physcomitrium patens HOM05D005405 ORTHO05D006333 1.7e-26 125.6 326 35.6
ECA248G0186 Erigeron canadensis HOM05D005405 ORTHO05D006333 5.0e-26 124.0 788 26.3
Zm00001eb157090 Zea mays HOM05D029717 ORTHO05D006333 5.6e-25 120.6 251 39.0
SEGI_12739 Sequoiadendron giganteum HOM05D005405 ORTHO05D006333 1.6e-24 119.0 404 32.2
CDE02G4244 Ceratophyllum demersum HOM05D005405 ORTHO05D006333 4.7e-24 117.5 170 48.2
Zm00001eb426420 Zea mays HOM05D005405 ORTHO05D006333 2.9e-21 108.2 280 30.0
Zm00001eb360110 Zea mays HOM05D029717 ORTHO05D006333 1.4e-20 105.9 245 36.3
Sc13g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 1.2e-19 102.8 696 26.3
Sc22g0000010 Simmondsia chinensis HOM05D005405 ORTHO05D006333 6.0e-19 100.5 695 26.3
Mapoly0116s0016 Marchantia polymorpha HOM05D005405 ORTHO05D006333 7.8e-19 100.1 295 33.2
CSS0015294 Camellia sinensis var. sinensis HOM05D067580 ORTHO05D006333 3.1e-15 88.2 67 74.6
CSS0020692 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 3.1e-15 88.2 58 72.4
CSS0029812 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 3.1e-15 88.2 58 72.4
CSS0038353 Camellia sinensis var. sinensis HOM05D067580 ORTHO05D006333 3.1e-15 88.2 67 74.6
HPP92_007064 Vanilla planifolia HOM05D005405 ORTHO05D006333 1.2e-14 86.3 256 29.7
SMO169G0140 Selaginella moellendorffii HOM05D005405 ORTHO05D006333 4.4e-14 84.3 231 33.8
GSVIVG01029064001 Vitis vinifera HOM05D005405 ORTHO05D006333 1.2e-11 76.3 86 52.3
CSS0039234 Camellia sinensis var. sinensis HOM05D005405 ORTHO05D006333 1.1e-09 69.7 93 46.2
PRCOL_00004693 Prasinoderma coloniale HOM05D005405 ORTHO05D006333 1.1e-09 69.7 83 44.6
Nn1g05672 Nelumbo nucifera HOM05D005405 ORTHO05D006333 2.5e-09 68.6 35 80.0
Cre01.g051700 Chlamydomonas reinhardtii HOM05D005405 ORTHO05D003830 1.1e-07 63.2 97 32.0
Carub.0005s2226 Capsella rubella HOM05D003544 ORTHO05D003830 5.2e-07 60.8 129 29.5
MCO11G148 Micromonas commoda HOM05D005405 ORTHO05D003830 6.8e-07 60.5 85 41.2
Sp5g06950 Schrenkiella parvula HOM05D003544 ORTHO05D003830 1.2e-06 59.7 130 29.2
AL5G36700 Arabidopsis lyrata HOM05D003544 ORTHO05D003830 1.5e-06 59.3 130 29.2
AT3G55530 Arabidopsis thaliana HOM05D003544 ORTHO05D003830 1.5e-06 59.3 130 29.2
BolC8t50710H Brassica oleracea HOM05D003544 ORTHO05D003830 2.0e-06 58.9 132 29.5
vmacro10222 Vaccinium macrocarpon HOM05D003544 ORTHO05D003830 2.6e-06 58.5 133 30.8
BcaC07g39879 Brassica carinata HOM05D003544 ORTHO05D003830 3.4e-06 58.2 134 29.1
C08p30840 Brassica napus HOM05D003544 ORTHO05D003830 3.4e-06 58.2 134 29.1
BcaB01g00085 Brassica carinata HOM05D003544 ORTHO05D003830 4.4e-06 57.8 129 29.5
CARHR165590 Cardamine hirsuta HOM05D003544 ORTHO05D003830 4.4e-06 57.8 131 29.0
Haze_17091 Corylus avellana HOM05D003544 ORTHO05D003830 4.4e-06 57.8 126 31.0
A09p48540 Brassica napus HOM05D003544 ORTHO05D003830 5.8e-06 57.4 130 29.2
TWI15G1030 Tripterygium wilfordii HOM05D003544 ORTHO05D003830 5.8e-06 57.4 133 29.3
Ah.15g098530 Amaranthus hybridus HOM05D003544 ORTHO05D003830 7.6e-06 57.0 135 32.6
Migut.F01531 Erythranthe guttata HOM05D003544 ORTHO05D003830 7.6e-06 57.0 135 30.4
Thhalv10010626m.g Eutrema salsugineum HOM05D003544 ORTHO05D003830 7.6e-06 57.0 130 28.5
SGA_v2.0_scaffold2G01024 Striga asiatica HOM05D003544 ORTHO05D003830 9.9e-06 56.6 136 30.1


User provided reference genes

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