Gene: AT3G55530

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G55530
  • Transcript Identifier AT3G55530.1
  • Gene Type Coding gene
  • Location Chr3 : 20595300-20597188 : negative

Gene Family Information

  • ID HOM05D003544
  • #Genes/#Species 193/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G55530.1
  • symbol SDIR1
  • Alias AtSDIR1
  • full_name SALT- AND DROUGHT-INDUCED RING FINGER1
  • uniprot Q9M2S6

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description SALT- AND DROUGHT-INDUCED RING FINGER1 (SDIR1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G04790.1); Has 9775 Blast hits to 9747 proteins in 287 species: Archae - 0; Bacteria - 6; Metazoa - 2690; Fungi - 760; Plants - 4971; Viruses - 89; Other Eukaryotes - 1259 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006511
IMP
Gene Ontologyubiquitin-dependent protein catabolic process1
GO:0016567
IDA
Gene Ontologyprotein ubiquitination2
GO:0009789
IMP
Gene Ontologypositive regulation of abscisic acid-activated signaling pathway2
GO:0009737
IEP
Gene Ontologyresponse to abscisic acid2
GO:0009651
IEP
Gene Ontologyresponse to salt stress2
GO:0009414
IEP
Gene Ontologyresponse to water deprivation2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016740
IEA
GOA Databasetransferase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0061630
IDA
Gene Ontologyubiquitin protein ligase activity1
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005789
IEA
GOA Databaseendoplasmic reticulum membrane
GO:0005789
IDA
Gene Ontologyendoplasmic reticulum membrane1
GO:0005783
IEA
GOA Databaseendoplasmic reticulum
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0005634
ISM
Gene Ontologynucleus
GO:0043231
IDA
Gene Ontologyintracellular membrane-bounded organelle2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001841 Zinc finger, RING-type
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
11.1.2.5 Phytohormone action.abscisic acid.perception and signalling.signal transducer (SDIR1)