Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0041500 Rhododendron simsii HOM05D006432 ORTHO05D008257 2.0e-141 505.8 251 100.0
Cfa014742 Carpinus fangiana HOM05D006432 ORTHO05D008257 6.6e-97 357.8 224 79.9
vmacro15458 Vaccinium macrocarpon HOM05D006432 ORTHO05D008257 3.6e-95 352.1 196 90.8
Haze_11417 Corylus avellana HOM05D006432 ORTHO05D008257 4.8e-95 351.7 196 87.8
Actinidia39914 Actinidia chinensis HOM05D006432 ORTHO05D008257 1.4e-94 350.1 198 87.4
TPR.G10084 Trifolium pratense HOM05D006432 ORTHO05D008257 9.0e-94 347.4 196 86.7
Glyma.20G207100 Glycine max HOM05D006432 ORTHO05D008257 1.2e-93 347.1 195 89.2
GSVIVG01027851001 Vitis vinifera HOM05D006432 ORTHO05D008257 1.2e-93 347.1 196 87.8
Nitab4.5_0000044g0560 Nicotiana tabacum HOM05D006432 ORTHO05D008257 1.5e-93 346.7 197 85.3
Eucgr.H00144 Eucalyptus grandis HOM05D006432 ORTHO05D008257 7.6e-93 344.4 196 86.7
Nitab4.5_0000596g0040 Nicotiana tabacum HOM05D006432 ORTHO05D008257 9.9e-93 344.0 222 77.9
Potri.008G169100 Populus trichocarpa HOM05D006432 ORTHO05D008257 1.3e-92 343.6 225 76.9
CAN.G220.38 Capsicum annuum HOM05D006432 ORTHO05D008257 1.7e-92 343.2 196 84.2
FAN12G0128 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.7e-92 343.2 196 86.7
FAN17G1327 Fragaria x ananassa HOM05D006432 ORTHO05D008257 1.7e-92 343.2 196 86.7
Solyc09g090330.3 Solanum lycopersicum HOM05D006432 ORTHO05D008257 1.7e-92 343.2 196 85.2
CSS0006599 Camellia sinensis var. sinensis HOM05D006432 ORTHO05D008257 2.2e-92 342.8 196 87.2
FAN22G0893 Fragaria x ananassa HOM05D006432 ORTHO05D008257 2.9e-92 342.4 196 86.2
Sc13g0005860 Simmondsia chinensis HOM05D006432 ORTHO05D008257 2.9e-92 342.4 196 85.2
VMungo0720G1276 Vigna mungo HOM05D006432 ORTHO05D008257 3.8e-92 342.0 195 88.2
QL06p019206 Quercus lobata HOM05D006432 ORTHO05D008257 4.9e-92 341.7 195 85.6
PGSC0003DMG400017164 Solanum tuberosum HOM05D006432 ORTHO05D008257 4.9e-92 341.7 196 84.2
Sabra08G0128900 Salix brachista HOM05D006432 ORTHO05D008257 6.4e-92 341.3 196 83.7
Sopen09g033230 Solanum pennellii HOM05D006432 ORTHO05D008257 8.4e-92 340.9 193 85.5
Medtr1g075660 Medicago truncatula HOM05D006432 ORTHO05D008257 1.1e-91 340.5 195 85.1
MBI07_g31085_MAGBIO Magnolia biondii HOM05D006432 ORTHO05D008257 2.4e-91 339.3 196 84.2
ClCG05G004210 Citrullus lanatus HOM05D006432 ORTHO05D008257 3.2e-91 339.0 196 84.2
Manes.15G043100 Manihot esculenta HOM05D006432 ORTHO05D008257 3.2e-91 339.0 196 85.2
RcHm_v2.0_Chr4g0394281 Rosa chinensis HOM05D006432 ORTHO05D008257 4.2e-91 338.6 196 85.7
Psat6g122560 Pisum sativum HOM05D006432 ORTHO05D008257 1.6e-90 336.7 195 83.6
PGR031G2997 Punica granatum HOM05D006432 ORTHO05D008257 2.1e-90 336.3 196 84.2
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 2.1e-90 336.3 196 83.2
Thecc.04G259000 Theobroma cacao HOM05D006432 ORTHO05D008257 2.1e-90 336.3 196 83.7
AUR62002163 Chenopodium quinoa HOM05D006432 ORTHO05D008257 4.6e-90 335.1 194 83.0
Lalb_Chr06g0169201 Lupinus albus HOM05D006432 ORTHO05D008257 4.6e-90 335.1 196 84.7
AUR62015546 Chenopodium quinoa HOM05D006432 ORTHO05D008257 6.0e-90 334.7 193 83.4
CsaV3_3G011940 Cucumis sativus L. HOM05D006432 ORTHO05D008257 6.0e-90 334.7 196 83.7
Dinv27072 Davidia involucrata HOM05D006432 ORTHO05D008257 6.0e-90 334.7 196 86.2
Ah.13g072590 Amaranthus hybridus HOM05D006432 ORTHO05D008257 1.0e-89 334.0 194 83.5
TWI73G0471 Tripterygium wilfordii HOM05D006432 ORTHO05D008257 1.0e-89 334.0 196 83.2
Duzib052G0458 Durio zibethinus HOM05D006432 ORTHO05D008257 1.3e-89 333.6 199 82.4
Actinidia11356 Actinidia chinensis HOM05D006432 ORTHO05D008257 1.7e-89 333.2 196 85.2
CiPaw.01G181700 Carya illinoinensis HOM05D006432 ORTHO05D008257 1.7e-89 333.2 196 83.7
COL.COLO4_15916 Corchorus olitorius HOM05D006432 ORTHO05D008257 3.0e-89 332.4 196 83.2
Hma1.2p1_0385F.1_g141240 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 3.0e-89 332.4 196 82.7
Lj3A686T58 Lonicera japonica HOM05D006432 ORTHO05D008257 3.9e-89 332.0 200 82.5
Ca_09849_v3 Cicer arietinum L. HOM05D006432 ORTHO05D008257 5.1e-89 331.6 195 83.1
Hund11907 Selenicereus undatus HOM05D006432 ORTHO05D008257 6.6e-89 331.3 196 81.6
ATR0582G319 Amborella trichopoda HOM05D006432 ORTHO05D008257 1.1e-88 330.5 193 85.0
Lalb_Chr21g0312161 Lupinus albus HOM05D006432 ORTHO05D008257 1.5e-88 330.1 195 82.1
Os11g0595200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 2.5e-88 329.3 198 80.3
Peaxi162Scf00392g00732 Petunia axillaris HOM05D006432 ORTHO05D008257 2.5e-88 329.3 196 81.6
Prupe.1G042200 Prunus persica HOM05D006432 ORTHO05D008257 2.5e-88 329.3 196 82.1
Zm00001eb114860 Zea mays HOM05D006432 ORTHO05D008257 2.5e-88 329.3 197 81.2
MELO3C006407.2 Cucumis melo HOM05D006432 ORTHO05D008257 3.3e-88 328.9 196 83.2
MD16G1221800 Malus domestica HOM05D006432 ORTHO05D008257 4.3e-88 328.6 195 82.1
Aqoxy5G00185 Aquilegia oxysepala HOM05D006432 ORTHO05D008257 5.6e-88 328.2 196 80.6
MSTRG.9882 Avicennia marina HOM05D006432 ORTHO05D008257 5.6e-88 328.2 196 81.1
Migut.N00285 Erythranthe guttata HOM05D006432 ORTHO05D008257 5.6e-88 328.2 196 81.1
HanXRQChr14g0434951 Helianthus annuus HOM05D006432 ORTHO05D008257 5.6e-88 328.2 196 81.1
Atru.chr4.2005 Acer truncatum HOM05D006432 ORTHO05D008257 7.3e-88 327.8 198 81.8
EL10Ac3g04982 Beta vulgaris HOM05D006432 ORTHO05D008257 1.3e-87 327.0 196 81.1
Ciclev10007095m.g Citrus clementina HOM05D006432 ORTHO05D008257 1.3e-87 327.0 196 82.1
Lj5g0003574 Lotus japonicus HOM05D006432 ORTHO05D008257 1.3e-87 327.0 196 83.2
Cc03_g05780 Coffea canephora HOM05D006432 ORTHO05D008257 8.1e-87 324.3 196 80.6
Lsat_1_v5_gn_2_40021 Lactuca sativa HOM05D006432 ORTHO05D008257 8.1e-87 324.3 196 79.6
CDE04G3487 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 1.8e-86 323.2 196 79.1
PSO478G2331 Papaver somniferum HOM05D006432 ORTHO05D008257 2.4e-86 322.8 196 80.1
CANSAT78G0744 Cannabis sativa HOM05D006432 ORTHO05D008257 5.8e-85 318.2 198 79.8
PSO017G5682 Papaver somniferum HOM05D006432 ORTHO05D008257 1.7e-84 316.6 196 78.1
Oeu059409.1 Olea europaea HOM05D006432 ORTHO05D008257 2.9e-84 315.8 196 79.6
Aa31LG8G9890 Aethionema arabicum HOM05D006432 ORTHO05D008257 1.4e-83 313.5 196 75.0
A07p09040 Brassica napus HOM05D006432 ORTHO05D008257 5.4e-83 311.6 196 75.0
THA.LOC104804760 Tarenaya hassleriana HOM05D006432 ORTHO05D008257 7.1e-83 311.2 195 74.9
Thhalv10021276m.g Eutrema salsugineum HOM05D006432 ORTHO05D008257 9.3e-83 310.8 196 74.0
Gohir.D09G229900 Gossypium hirsutum HOM05D006432 ORTHO05D008257 9.3e-83 310.8 196 76.0
Gorai.006G252600 Gossypium raimondii HOM05D006432 ORTHO05D008257 1.2e-82 310.5 196 76.0
BolC7t41898H Brassica oleracea HOM05D006432 ORTHO05D008257 1.6e-82 310.1 196 74.5
BcaC06g35517 Brassica carinata HOM05D006432 ORTHO05D008257 2.7e-82 309.3 196 74.5
ECA240G3223 Erigeron canadensis HOM05D002023 ORTHO05D002049 2.7e-82 309.3 189 78.8
Gohir.A09G228800 Gossypium hirsutum HOM05D006432 ORTHO05D008257 3.5e-82 308.9 196 75.5
AL3G38060 Arabidopsis lyrata HOM05D006432 ORTHO05D008257 4.6e-82 308.5 196 74.0
BraA07t28698Z Brassica rapa HOM05D006432 ORTHO05D008257 6.0e-82 308.1 196 74.0
AT3G23400 Arabidopsis thaliana HOM05D006432 ORTHO05D008257 1.0e-81 307.4 196 74.0
Carub.0003s2366 Capsella rubella HOM05D006432 ORTHO05D008257 1.0e-81 307.4 195 74.9
C07p14010 Brassica napus HOM05D006432 ORTHO05D008257 1.3e-81 307.0 196 74.0
CARHR099370 Cardamine hirsuta HOM05D006432 ORTHO05D008257 8.7e-81 304.3 196 72.4
Nn3g19719 Nelumbo nucifera HOM05D006432 ORTHO05D008257 8.7e-81 304.3 196 79.6
Sp3g21070 Schrenkiella parvula HOM05D006432 ORTHO05D008257 1.1e-80 303.9 196 72.4
Glyma.10G182900 Glycine max HOM05D006432 ORTHO05D008257 1.1e-78 297.4 168 86.3
HPP92_005402 Vanilla planifolia HOM05D006432 ORTHO05D008257 6.5e-76 288.1 193 74.1
Hma1.2p1_0385F.1_g141230 Hydrangea macrophylla HOM05D006432 ORTHO05D008257 9.3e-75 284.3 168 82.1
MD13G1216500 Malus domestica HOM05D006432 ORTHO05D008257 5.3e-70 268.5 218 64.2
Pp3c11_17240 Physcomitrium patens HOM05D006432 ORTHO05D008257 6.1e-66 255.0 196 60.2
SEGI_38471 Sequoiadendron giganteum HOM05D006432 ORTHO05D008257 6.1e-66 255.0 193 64.2
unitig_0.g1188 Utricularia gibba HOM05D006432 ORTHO05D008257 1.5e-64 250.4 171 73.1
SMO141G0176 Selaginella moellendorffii HOM05D006432 ORTHO05D008257 3.4e-61 239.2 192 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2035 Anthoceros agrestis HOM05D006432 ORTHO05D008257 4.5e-61 238.8 216 54.2
Nn1g02871 Nelumbo nucifera HOM05D006432 ORTHO05D008257 2.9e-60 236.1 140 82.9
Oeu055241.1 Olea europaea HOM05D000508 ORTHO05D000371 7.4e-56 221.5 229 55.5
BcaB05g22938 Brassica carinata HOM05D006432 ORTHO05D008257 1.4e-54 217.2 163 64.4
arahy.Tifrunner.gnm1.ann1.508QQU Arachis hypogaea HOM05D006432 ORTHO05D008257 8.5e-52 208.0 114 85.1
arahy.Tifrunner.gnm1.ann1.X8C4EZ Arachis hypogaea HOM05D006432 ORTHO05D008257 1.1e-51 207.6 114 84.2
Cpa.g.sc44.36 Carica papaya HOM05D006432 ORTHO05D008257 1.8e-49 200.3 110 82.7
Mapoly0012s0134 Marchantia polymorpha HOM05D006432 ORTHO05D008257 8.8e-49 198.0 192 52.1
SGA_v2.0_scaffold43G16214 Striga asiatica HOM05D006432 ORTHO05D008257 4.4e-48 195.7 114 80.7
Dinv29840 Davidia involucrata HOM05D006432 ORTHO05D008257 2.4e-46 189.9 110 84.5
CDE03G0089 Ceratophyllum demersum HOM05D006432 ORTHO05D008257 2.5e-43 179.9 114 75.4
CBR_g30839 Chara braunii HOM05D006432 ORTHO05D008257 3.0e-41 172.9 202 43.6
SGA_v2.0_scaffold370G50119 Striga asiatica HOM05D006432 ORTHO05D008257 1.5e-40 170.6 105 74.3
FvH4_4g04000 Fragaria vesca HOM05D003789 ORTHO05D004158 6.1e-34 148.7 96 78.1
Phvul.010G070111 Phaseolus vulgaris HOM05D006432 ORTHO05D008257 1.5e-32 144.1 85 88.2
Cpa.g.sc44.33 Carica papaya HOM05D006432 ORTHO05D008257 8.3e-31 138.3 84 84.5
BcaB04g17238 Brassica carinata HOM05D006432 ORTHO05D008257 2.7e-29 133.3 107 58.9
Nn1g02875 Nelumbo nucifera HOM05D006432 ORTHO05D008257 7.7e-29 131.7 85 81.2
BcaB02g08931 Brassica carinata HOM05D006432 ORTHO05D008257 1.7e-28 130.6 102 57.8
BcaB01g01688 Brassica carinata HOM05D006432 ORTHO05D008257 2.1e-26 123.6 79 65.8
Cre02.g143667 Chlamydomonas reinhardtii HOM05D006432 ORTHO05D008257 4.7e-26 122.5 265 33.2
MCO05G338 Micromonas commoda HOM05D006432 ORTHO05D008257 1.9e-19 100.5 203 36.0
BcaB07g33946 Brassica carinata HOM05D006432 ORTHO05D008257 3.6e-18 96.3 62 62.9
Os05g0304200 Oryza sativa ssp. japonica HOM05D006432 ORTHO05D008257 2.0e-16 90.5 73 61.6
Sabra10G0037800 Salix brachista HOM05D006432 ORTHO05D008257 1.0e-09 68.2 41 70.7
CARHR203580 Cardamine hirsuta HOM05D005663 ORTHO05D007258 4.0e-09 66.2 195 27.2
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 1.5e-08 64.3 210 27.1
Potri.001G309300 Populus trichocarpa HOM05D005663 ORTHO05D007258 4.4e-08 62.8 189 29.1
AT5G09820 Arabidopsis thaliana HOM05D005663 ORTHO05D007258 5.8e-08 62.4 195 26.7
AL6G20230 Arabidopsis lyrata HOM05D005663 ORTHO05D007258 7.5e-08 62.0 195 26.7
BraA03t09772Z Brassica rapa HOM05D005663 ORTHO05D007258 7.5e-08 62.0 193 27.5
Sopen11g001350 Solanum pennellii HOM05D005663 ORTHO05D007258 7.5e-08 62.0 193 29.0
PRCOL_00002195 Prasinoderma coloniale HOM05D006432 ORTHO05D008257 9.8e-08 61.6 155 31.6
Sp6g33590 Schrenkiella parvula HOM05D005663 ORTHO05D007258 9.8e-08 61.6 195 26.2
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.3e-07 61.2 193 28.5
Manes.13G086600 Manihot esculenta HOM05D005663 ORTHO05D007258 1.7e-07 60.8 189 28.0
Psat7g048760 Pisum sativum HOM05D005663 ORTHO05D007258 1.7e-07 60.8 192 27.1
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 2.2e-07 60.5 190 27.4
RcHm_v2.0_Chr2g0119121 Rosa chinensis HOM05D005663 ORTHO05D007258 2.2e-07 60.5 190 27.4
Carub.0006s0824 Capsella rubella HOM05D005663 ORTHO05D007258 2.9e-07 60.1 195 26.2
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 2.9e-07 60.1 189 27.5
Thecc.01G121000 Theobroma cacao HOM05D005663 ORTHO05D007258 2.9e-07 60.1 187 28.3
Aa31LG3G17290 Aethionema arabicum HOM05D005663 ORTHO05D007258 3.7e-07 59.7 195 24.1
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 3.7e-07 59.7 195 27.2
A03p04280 Brassica napus HOM05D005663 ORTHO05D007258 3.7e-07 59.7 196 27.0
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 3.7e-07 59.7 189 27.5
TPR.G2176 Trifolium pratense HOM05D005663 ORTHO05D007258 4.9e-07 59.3 193 26.9
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 6.4e-07 58.9 190 28.4
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 6.4e-07 58.9 186 28.5
THA.LOC104818465 Tarenaya hassleriana HOM05D005663 ORTHO05D007258 6.4e-07 58.9 192 25.5
TAR376G1167 Trochodendron aralioides HOM05D003483 ORTHO05D004101 6.4e-07 58.9 190 27.9
FvH4_1g23570 Fragaria vesca HOM05D005663 ORTHO05D007258 8.3e-07 58.5 190 25.8
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 1.1e-06 58.2 190 26.3
Thhalv10014407m.g Eutrema salsugineum HOM05D005663 ORTHO05D007258 1.1e-06 58.2 195 25.1
FAN26G2344 Fragaria x ananassa HOM05D005663 ORTHO05D007258 1.1e-06 58.2 190 25.8
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 1.1e-06 58.2 195 28.2
CAN.G345.5 Capsicum annuum HOM05D006432 ORTHO05D008257 1.4e-06 57.8 44 68.2
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 1.4e-06 57.8 190 26.3
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 1.9e-06 57.4 190 27.4
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 1.9e-06 57.4 190 29.5
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 2.4e-06 57.0 190 26.8
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 2.4e-06 57.0 192 30.2
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 2.4e-06 57.0 190 27.9
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 3.2e-06 56.6 190 27.9
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 3.2e-06 56.6 189 27.5
unitig_899.g14706 Utricularia gibba HOM05D005663 ORTHO05D007258 3.2e-06 56.6 190 28.9
arahy.Tifrunner.gnm1.ann1.MUYK2J Arachis hypogaea HOM05D003483 ORTHO05D004101 4.1e-06 56.2 190 28.4
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 5.4e-06 55.8 190 27.4
Gorai.002G151300 Gossypium raimondii HOM05D005663 ORTHO05D007258 5.4e-06 55.8 190 27.9
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 9.2e-06 55.1 190 28.9
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 9.2e-06 55.1 190 27.4


User provided reference genes

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