Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 4.8e-167 591.3 337 100.0
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.1e-146 522.7 351 89.5
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 8.8e-129 464.2 349 79.7
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.3e-119 433.7 347 75.8
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 4.5e-117 425.2 347 74.1
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 1.7e-116 423.3 338 77.5
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 2.3e-116 422.9 347 73.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 2.0e-109 399.8 347 71.2
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.9e-108 396.0 351 68.7
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.6e-108 394.8 347 70.9
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 6.6e-108 394.8 338 71.9
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 4.7e-106 388.7 372 65.9
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 6.2e-106 388.3 348 70.1
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 2.3e-105 386.3 348 69.0
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 4.0e-105 385.6 349 69.3
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.5e-104 383.6 348 67.0
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 3.4e-104 382.5 365 66.8
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.4e-104 382.1 338 71.3
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 4.4e-104 382.1 345 67.2
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 4.4e-104 382.1 350 68.0
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 4.9e-103 378.6 348 69.3
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 2.7e-101 372.9 337 70.3
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.3e-100 370.5 347 67.4
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 2.3e-100 369.8 301 72.4
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.0e-100 369.4 347 66.6
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 6.6e-100 368.2 344 67.4
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.9e-99 366.7 357 65.3
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 2.5e-99 366.3 356 65.4
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 7.3e-99 364.8 350 66.6
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 9.5e-99 364.4 317 70.0
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 2.1e-98 363.2 362 64.9
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.8e-97 360.1 347 65.7
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 5.2e-97 358.6 347 66.6
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 1.2e-96 357.5 350 66.9
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.7e-95 353.6 295 71.9
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.7e-95 353.6 358 64.0
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 3.7e-95 352.4 348 66.1
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 6.4e-95 351.7 347 65.1
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 6.4e-95 351.7 298 71.8
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 7.1e-94 348.2 386 60.6
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-93 347.4 299 69.9
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.6e-93 347.1 326 66.3
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 3.0e-92 342.8 325 66.5
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.1e-91 340.9 336 65.2
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 3.3e-91 339.3 346 64.2
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 6.2e-90 335.1 348 63.5
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.4e-89 334.0 354 63.8
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 5.2e-89 332.0 336 62.8
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 7.6e-88 328.2 349 62.8
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.3e-87 327.4 335 62.7
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.9e-87 326.2 403 56.6
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 4.9e-87 325.5 337 62.9
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.6e-85 320.5 346 61.3
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 4.6e-85 318.9 349 61.0
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.7e-84 317.0 364 58.8
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 5.1e-84 315.5 335 60.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 6.6e-84 315.1 240 75.0
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.9e-83 313.5 344 61.9
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 4.3e-83 312.4 270 70.4
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.6e-83 312.0 270 70.0
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 5.6e-83 312.0 359 59.6
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 7.3e-83 311.6 317 63.1
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 1.2e-82 310.8 335 61.2
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.1e-82 310.1 271 69.7
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 1.8e-81 307.0 379 55.4
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 2.4e-81 306.6 379 55.4
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 6.8e-81 305.1 366 57.4
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.2e-80 304.3 316 67.4
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.5e-80 303.9 335 59.7
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 2.9e-79 299.7 314 62.1
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 6.4e-79 298.5 386 53.6
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 8.4e-79 298.1 348 57.2
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.1e-78 297.7 296 62.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 1.1e-78 297.7 314 60.5
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 1.9e-78 297.0 301 63.8
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.4e-78 296.6 270 68.1
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 2.4e-78 296.6 346 58.4
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 7.1e-78 295.0 346 58.1
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 2.7e-77 293.1 352 58.2
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.0e-77 292.0 310 60.3
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 6.6e-76 288.5 347 59.1
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 8.7e-76 288.1 321 58.3
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 1.9e-75 287.0 345 55.4
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.3e-75 286.2 215 76.3
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.6e-74 283.9 310 59.0
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 3.6e-74 282.7 284 63.0
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 8.1e-74 281.6 348 57.8
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.8e-73 280.4 350 54.6
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.4e-73 280.0 335 57.3
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 6.9e-73 278.5 309 58.6
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 1.5e-72 277.3 359 54.9
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.7e-71 273.9 365 54.8
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 2.2e-71 273.5 355 56.9
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 4.9e-71 272.3 289 60.9
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 6.4e-71 271.9 347 55.0
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.1e-70 271.2 269 62.5
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 3.2e-70 269.6 311 57.9
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.9e-67 260.4 338 55.6
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 3.3e-67 259.6 368 51.1
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 2.1e-66 256.9 369 50.7
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 2.8e-66 256.5 378 50.3
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.5e-64 250.8 424 45.0
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.6e-64 250.0 347 53.9
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 1.2e-61 241.1 351 51.9
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 1.2e-61 241.1 351 51.9
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 3.0e-60 236.5 303 53.8
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 1.1e-59 234.6 386 47.7
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.9e-59 233.8 234 60.7
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 1.9e-59 233.8 220 62.7
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.3e-58 231.1 488 39.5
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.8e-57 227.3 205 64.4
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.2e-55 220.3 192 70.8
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 3.2e-54 216.5 254 54.3
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 2.1e-53 213.8 212 60.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 2.1e-53 213.8 212 60.8
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 3.9e-52 209.5 348 48.0
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 1.4e-49 201.1 345 47.5
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.5e-48 197.6 295 49.8
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.6e-48 195.3 345 44.3
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 7.6e-48 195.3 311 43.7
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.4e-46 191.0 332 48.5
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 5.5e-46 189.1 346 43.6
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.3e-46 188.3 254 51.6
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 9.3e-46 188.3 275 49.5
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.2e-45 188.0 205 61.5
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 2.3e-44 183.7 341 41.6
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 3.7e-42 176.4 348 43.7
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 8.2e-42 175.3 293 44.4
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 2.2e-39 167.2 269 46.5
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 8.5e-39 165.2 169 58.6
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.1e-38 164.9 439 37.6
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 5.3e-33 146.0 207 52.7
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 4.5e-32 142.9 152 61.2
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.9e-30 137.5 348 38.8
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 4.4e-19 99.8 136 46.3
Atru.chr4.2281 Acer truncatum HOM05D000979 ORTHO05D003182 4.8e-18 96.3 98 65.3
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 3.5e-16 90.1 102 57.8
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 5.9e-16 89.4 142 38.0
Gorai.003G091900 Gossypium raimondii HOM05D004913 ORTHO05D006150 6.8e-12 75.9 94 55.3
Gohir.D08G197400 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.2e-11 75.1 94 54.3
Gorai.007G212000 Gossypium raimondii HOM05D004913 ORTHO05D006150 4.4e-11 73.2 94 54.3
Gohir.D03G068600 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.7e-10 70.1 94 52.1
FAN16G0422 Fragaria x ananassa HOM05D004913 ORTHO05D006150 9.1e-09 65.5 118 51.7
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 7.7e-08 62.4 87 51.7
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.7e-07 61.2 67 56.7
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 3.8e-07 60.1 58 67.2
Cpa.g.c45152 Carica papaya HOM05D004913 ORTHO05D006150 9.5e-06 55.5 90 52.2


User provided reference genes

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