Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0007900 Rhododendron simsii HOM05D002087 ORTHO05D002101 4.6e-56 221.1 118 100.0
vmacro15221 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 2.2e-18 95.9 61 83.6
Dinv29766 Davidia involucrata HOM05D002087 ORTHO05D002101 4.3e-14 81.6 111 54.1
CSS0008385 Camellia sinensis var. sinensis HOM05D002087 ORTHO05D002101 5.8e-11 71.2 95 47.4
Potri.010G012100 Populus trichocarpa HOM05D002087 ORTHO05D002101 7.6e-11 70.9 112 46.4
Sabra10G0007800 Salix brachista HOM05D002087 ORTHO05D002101 1.7e-10 69.7 114 44.7
Atru.chr6.1998 Acer truncatum HOM05D002087 ORTHO05D002101 2.2e-10 69.3 109 48.6
Dinv44363 Davidia involucrata HOM05D002087 ORTHO05D002101 2.2e-10 69.3 80 55.0
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.9e-10 68.9 109 50.5
PGR031G1676 Punica granatum HOM05D002087 ORTHO05D002101 3.8e-10 68.6 113 45.1
TWI73G0336 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 3.8e-10 68.6 111 48.6
Ciclev10006308m.g Citrus clementina HOM05D002087 ORTHO05D002101 4.9e-10 68.2 109 47.7
QL06p009975 Quercus lobata HOM05D002087 ORTHO05D002101 4.9e-10 68.2 114 46.5
QL93p2007_0079 Quercus lobata HOM05D002087 ORTHO05D002101 4.9e-10 68.2 114 46.5
Thecc.04G287100 Theobroma cacao HOM05D002087 ORTHO05D002101 6.4e-10 67.8 109 46.8
Manes.03G197100 Manihot esculenta HOM05D002087 ORTHO05D002101 2.4e-09 65.9 109 44.0
MD00G1127700 Malus domestica HOM05D002087 ORTHO05D002101 3.2e-09 65.5 104 48.1
TAR633G2750 Trochodendron aralioides HOM05D002087 ORTHO05D002101 3.2e-09 65.5 109 45.0
COL.COLO4_13835 Corchorus olitorius HOM05D002087 ORTHO05D002101 7.1e-09 64.3 116 45.7
Hma1.2p1_0078F.1_g040440 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 9.3e-09 63.9 74 52.7
Actinidia25806 Actinidia chinensis HOM05D002087 ORTHO05D002101 2.1e-08 62.8 108 43.5
TWI09G0245 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 2.1e-08 62.8 109 40.4
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 2.7e-08 62.4 109 46.8
FvH4_4g18470 Fragaria vesca HOM05D002087 ORTHO05D002101 3.5e-08 62.0 111 47.7
FAN12G0677 Fragaria x ananassa HOM05D002087 ORTHO05D002101 3.5e-08 62.0 111 47.7
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 6.0e-08 61.2 109 46.8
MBI18_g24872_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 6.0e-08 61.2 109 42.2
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 7.9e-08 60.8 109 41.3
THA.LOC104820291 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 7.9e-08 60.8 97 43.3
Rhsim13G0009300 Rhododendron simsii HOM05D002087 ORTHO05D002101 1.0e-07 60.5 112 42.9
PGSC0003DMG400031788 Solanum tuberosum HOM05D002087 ORTHO05D002101 1.0e-07 60.5 109 44.0
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.3e-07 60.1 109 43.1
AUR62008681 Chenopodium quinoa HOM05D002087 ORTHO05D002101 1.8e-07 59.7 109 46.8
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 1.8e-07 59.7 109 44.0
Nn4g25778 Nelumbo nucifera HOM05D002087 ORTHO05D002101 1.8e-07 59.7 119 41.2
Peaxi162Scf00399g00518 Petunia axillaris HOM05D002087 ORTHO05D002101 1.8e-07 59.7 113 41.6
Glyma.09G043400 Glycine max HOM05D002087 ORTHO05D002101 2.3e-07 59.3 94 44.7
CAN.G1989.1 Capsicum annuum HOM05D002087 ORTHO05D002101 3.0e-07 58.9 62 46.8
Cc01_g20970 Coffea canephora HOM05D002087 ORTHO05D002101 3.9e-07 58.5 109 41.3
Duzib151G0120 Durio zibethinus HOM05D002087 ORTHO05D002101 3.9e-07 58.5 115 45.2
FAN17G2928 Fragaria x ananassa HOM05D002087 ORTHO05D002101 3.9e-07 58.5 111 45.9
FAN12G1374 Fragaria x ananassa HOM05D002087 ORTHO05D002101 5.1e-07 58.2 112 45.5
Glyma.15G149600 Glycine max HOM05D002087 ORTHO05D002101 5.1e-07 58.2 94 43.6
RcHm_v2.0_Chr4g0422961 Rosa chinensis HOM05D002087 ORTHO05D002101 5.1e-07 58.2 111 44.1
GSVIVG01028033001 Vitis vinifera HOM05D002087 ORTHO05D002101 5.1e-07 58.2 109 43.1
CAN.G1280.5 Capsicum annuum HOM05D002087 ORTHO05D002101 8.7e-07 57.4 109 40.4
CAN.G1989.10 Capsicum annuum HOM05D002087 ORTHO05D002101 8.7e-07 57.4 109 40.4
Cpa.g.sc16.192 Carica papaya HOM05D002087 ORTHO05D002101 8.7e-07 57.4 111 42.3
Nitab4.5_0002820g0100 Nicotiana tabacum HOM05D002087 ORTHO05D002101 8.7e-07 57.4 109 39.4
Hund05435 Selenicereus undatus HOM05D002087 ORTHO05D002101 8.7e-07 57.4 111 44.1
vmacro02442 Vaccinium macrocarpon HOM05D002087 ORTHO05D002101 8.7e-07 57.4 109 41.3
Actinidia21040 Actinidia chinensis HOM05D002087 ORTHO05D002101 1.1e-06 57.0 101 44.6
Gohir.D10G171400 Gossypium hirsutum HOM05D002087 ORTHO05D002101 1.1e-06 57.0 111 42.3
Hma1.2p1_0494F.1_g165250 Hydrangea macrophylla HOM05D002087 ORTHO05D002101 1.1e-06 57.0 112 41.1
EL10Ac7g17530 Beta vulgaris HOM05D002087 ORTHO05D002101 1.5e-06 56.6 109 43.1
Gorai.011G191500 Gossypium raimondii HOM05D002087 ORTHO05D002101 1.5e-06 56.6 111 42.3
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 1.5e-06 56.6 109 38.5
Oeu048333.1 Olea europaea HOM05D002087 ORTHO05D002101 1.5e-06 56.6 95 40.0
Solyc09g075210.3 Solanum lycopersicum HOM05D002087 ORTHO05D002101 1.5e-06 56.6 109 42.2
MBI19_g43555_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 1.9e-06 56.2 109 39.4
MBI19_g46347_MAGBIO Magnolia biondii HOM05D002087 ORTHO05D002101 1.9e-06 56.2 109 39.4
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 1.9e-06 56.2 109 40.4
Sopen09g030030 Solanum pennellii HOM05D002087 ORTHO05D002101 1.9e-06 56.2 109 42.2
MELO3C015995.2 Cucumis melo HOM05D002087 ORTHO05D002101 2.5e-06 55.8 112 38.4
Prupe.1G133500 Prunus persica HOM05D002087 ORTHO05D002101 2.5e-06 55.8 106 43.4
TAR365G0110 Trochodendron aralioides HOM05D002087 ORTHO05D002101 2.5e-06 55.8 112 44.6
Ah.15g093120 Amaranthus hybridus HOM05D002087 ORTHO05D002101 3.3e-06 55.5 109 38.5
Aqoxy2G02929 Aquilegia oxysepala HOM05D002087 ORTHO05D002101 3.3e-06 55.5 110 40.9
CAN.G472.12 Capsicum annuum HOM05D002087 ORTHO05D002101 3.3e-06 55.5 109 36.7
AUR62025562 Chenopodium quinoa HOM05D002087 ORTHO05D002101 3.3e-06 55.5 109 45.0
Eucgr.H01104 Eucalyptus grandis HOM05D002087 ORTHO05D002101 3.3e-06 55.5 109 45.0
FAN07G0698 Fragaria x ananassa HOM05D002087 ORTHO05D002101 3.3e-06 55.5 109 43.1
Gohir.A10G165300 Gossypium hirsutum HOM05D002087 ORTHO05D002101 3.3e-06 55.5 111 41.4
Sp1g01800 Schrenkiella parvula HOM05D002087 ORTHO05D002101 3.3e-06 55.5 113 44.2
THA.LOC104801278 Tarenaya hassleriana HOM05D002087 ORTHO05D002101 3.3e-06 55.5 109 41.3
CARHR250570 Cardamine hirsuta HOM05D002087 ORTHO05D002101 4.3e-06 55.1 110 42.7
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 4.3e-06 55.1 109 39.4
Phvul.009G249500 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 4.3e-06 55.1 110 42.7
TAR636G0371 Trochodendron aralioides HOM05D002087 ORTHO05D002101 4.3e-06 55.1 109 46.8
Actinidia26754 Actinidia chinensis HOM05D002087 ORTHO05D002101 5.6e-06 54.7 41 58.5
Aa31LG10G6230 Aethionema arabicum HOM05D002087 ORTHO05D002101 5.6e-06 54.7 110 41.8
CARHR290450 Cardamine hirsuta HOM05D002087 ORTHO05D002101 5.6e-06 54.7 45 51.1
Eucgr.H01103 Eucalyptus grandis HOM05D002087 ORTHO05D002101 5.6e-06 54.7 109 45.0
Actinidia14332 Actinidia chinensis HOM05D002087 ORTHO05D002101 7.4e-06 54.3 106 40.6
AT4G15910 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 7.4e-06 54.3 64 45.3
Carub.0001s0193 Capsella rubella HOM05D002087 ORTHO05D002101 7.4e-06 54.3 112 39.3
Ah.08g213310 Amaranthus hybridus HOM05D002087 ORTHO05D002101 9.6e-06 53.9 109 38.5
AT4G02380 Arabidopsis thaliana HOM05D002087 ORTHO05D002101 9.6e-06 53.9 110 38.2
CARHR002140 Cardamine hirsuta HOM05D002087 ORTHO05D002101 9.6e-06 53.9 111 39.6
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 9.6e-06 53.9 109 42.2


User provided reference genes

Program Settings