Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0000400 Rhododendron simsii HOM05D001779 ORTHO05D001753 1.3e-99 366.3 179 100.0
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 5.8e-63 244.6 228 56.1
Lalb_Chr12g0200631 Lupinus albus HOM05D001779 ORTHO05D001753 6.5e-62 241.1 228 54.4
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 2.7e-60 235.7 228 53.9
Lsat_1_v5_gn_6_71420 Lactuca sativa HOM05D001779 ORTHO05D001753 4.3e-58 228.4 228 51.3
HPP92_002695 Vanilla planifolia HOM05D001779 ORTHO05D001753 4.6e-52 208.4 228 45.6
Hund22619 Selenicereus undatus HOM05D001779 ORTHO05D001753 1.8e-51 206.5 227 50.2
CAN.G484.86 Capsicum annuum HOM05D001779 ORTHO05D001753 3.3e-50 202.2 230 47.0
EL10Ac3g06265 Beta vulgaris HOM05D001779 ORTHO05D001753 1.3e-49 200.3 232 47.8
Nitab4.5_0004665g0040 Nicotiana tabacum HOM05D001779 ORTHO05D001753 2.4e-48 196.1 228 47.4
AUR62002564 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.1e-48 195.7 232 46.6
Nitab4.5_0000895g0210 Nicotiana tabacum HOM05D001779 ORTHO05D001753 3.1e-48 195.7 228 47.4
Ciclev10004807m.g Citrus clementina HOM05D001779 ORTHO05D001753 1.5e-47 193.4 228 47.8
VMungo1309G1222 Vigna mungo HOM05D001779 ORTHO05D001753 1.0e-46 190.7 228 44.3
Glyma.09G082100 Glycine max HOM05D001779 ORTHO05D001753 2.2e-46 189.5 228 44.7
AUR62029986 Chenopodium quinoa HOM05D001779 ORTHO05D001753 3.8e-46 188.7 228 45.6
PGSC0003DMG400004604 Solanum tuberosum HOM05D001779 ORTHO05D001753 5.0e-46 188.3 227 46.3
ECA233G0980 Erigeron canadensis HOM05D001779 ORTHO05D001753 7.9e-44 181.0 228 44.3
FAN07G0256 Fragaria x ananassa HOM05D001779 ORTHO05D001753 7.9e-44 181.0 228 46.1
HanXRQChr08g0236261 Helianthus annuus HOM05D001779 ORTHO05D001753 1.8e-43 179.9 229 45.0
Lj4g0024045 Lotus japonicus HOM05D001779 ORTHO05D001753 8.8e-43 177.6 228 45.6
Duzib151G0917 Durio zibethinus HOM05D001779 ORTHO05D001753 1.1e-42 177.2 228 45.6
Ah.07g203760 Amaranthus hybridus HOM05D001779 ORTHO05D001753 7.7e-39 164.5 246 38.6
THA.LOC104818854 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 1.0e-38 164.1 228 43.4
Solyc12g098990.2 Solanum lycopersicum HOM05D001779 ORTHO05D001753 1.9e-37 159.8 227 41.4
Sopen12g033730 Solanum pennellii HOM05D001779 ORTHO05D001753 5.5e-37 158.3 227 41.0
Lj6g0005216 Lotus japonicus HOM05D001779 ORTHO05D001753 9.4e-37 157.5 228 40.4
SGA_v2.0_scaffold123G33423 Striga asiatica HOM05D001779 ORTHO05D001753 9.4e-37 157.5 231 41.1
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 2.1e-36 156.4 246 37.8
TAR636G0056 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.7e-36 156.0 246 39.8
vmacro08004 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 7.9e-36 154.5 228 43.0
MBI17_g35770_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 1.4e-35 153.7 228 40.8
Prupe.1G106700 Prunus persica HOM05D001779 ORTHO05D001753 2.3e-35 152.9 228 43.4
Aqoxy2G02534 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 6.7e-35 151.4 246 39.0
CSS0040613 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 6.7e-35 151.4 230 42.6
Phvul.009G219100 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 3.3e-34 149.1 185 42.2
Rhsim04G0247500 Rhododendron simsii HOM05D001779 ORTHO05D001753 5.7e-34 148.3 228 42.1
Oeu012215.1 Olea europaea HOM05D001779 ORTHO05D001753 1.3e-33 147.1 228 40.8
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 3.7e-33 145.6 230 39.6
MD16G1137800 Malus domestica HOM05D001779 ORTHO05D001753 2.4e-32 142.9 228 41.2
TWI09G0293 Tripterygium wilfordii HOM05D001779 ORTHO05D001753 7.0e-32 141.4 245 37.6
Actinidia07529 Actinidia chinensis HOM05D001779 ORTHO05D001753 2.0e-31 139.8 228 40.8
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 4.5e-31 138.7 246 36.2
MD13G1141500 Malus domestica HOM05D001779 ORTHO05D001753 7.7e-31 137.9 228 40.8
Lalb_Chr07g0181761 Lupinus albus HOM05D001779 ORTHO05D001753 1.7e-30 136.7 228 38.6
ATR0796G248 Amborella trichopoda HOM05D001779 ORTHO05D001753 8.5e-30 134.4 227 36.1
Migut.K01514 Erythranthe guttata HOM05D001779 ORTHO05D001753 8.0e-28 127.9 228 36.8
MSTRG.21746 Avicennia marina HOM05D001779 ORTHO05D001753 3.0e-27 125.9 228 37.3
Cc03_g00220 Coffea canephora HOM05D001779 ORTHO05D001753 3.9e-27 125.6 228 37.7
Cfa014645 Carpinus fangiana HOM05D001779 ORTHO05D001753 5.2e-27 125.2 228 38.2
Haze_00787 Corylus avellana HOM05D000159 ORTHO05D002729 5.2e-27 125.2 228 38.6
Haze_00790 Corylus avellana HOM05D001779 ORTHO05D001753 5.2e-27 125.2 228 38.6
CsaV3_6G000170 Cucumis sativus L. HOM05D001779 ORTHO05D001753 5.2e-27 125.2 230 37.4
RcHm_v2.0_Chr4g0427331 Rosa chinensis HOM05D001779 ORTHO05D001753 1.1e-26 124.0 228 37.3
CiPaw.02G070600 Carya illinoinensis HOM05D001779 ORTHO05D001753 1.5e-26 123.6 228 37.3
ClCG06G004250 Citrullus lanatus HOM05D001779 ORTHO05D001753 1.5e-26 123.6 228 37.7
Gohir.D10G183000 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.0e-26 123.2 228 38.2
Gorai.011G205100 Gossypium raimondii HOM05D001779 ORTHO05D001753 2.0e-26 123.2 228 38.2
DCAR_026955 Daucus carota HOM05D001779 ORTHO05D001753 2.6e-26 122.9 230 36.1
Glyma.17G034600 Glycine max HOM05D001779 ORTHO05D001753 2.6e-26 122.9 228 37.3
MELO3C021235.2 Cucumis melo HOM05D001779 ORTHO05D001753 3.3e-26 122.5 228 37.3
Sed0019547 Sechium edule HOM05D001779 ORTHO05D001753 4.4e-26 122.1 230 36.1
Migut.N00010 Erythranthe guttata HOM05D001779 ORTHO05D001753 5.7e-26 121.7 228 36.0
Cpa.g.sc146.33 Carica papaya HOM05D001779 ORTHO05D001753 7.4e-26 121.3 228 36.8
FAN17G0100 Fragaria x ananassa HOM05D001779 ORTHO05D001753 9.7e-26 120.9 228 36.0
Gohir.A10G176300 Gossypium hirsutum HOM05D001779 ORTHO05D001753 9.7e-26 120.9 228 37.7
Sed0024001 Sechium edule HOM05D001779 ORTHO05D001753 9.7e-26 120.9 228 36.4
CDE04G1668 Ceratophyllum demersum HOM05D001779 ORTHO05D001753 1.3e-25 120.6 230 34.3
Dinv29518 Davidia involucrata HOM05D001779 ORTHO05D001753 1.7e-25 120.2 228 37.7
HPP92_002622 Vanilla planifolia HOM05D001779 ORTHO05D001753 1.7e-25 120.2 246 30.9
Psat0ss1196g0240 Pisum sativum HOM05D001779 ORTHO05D001753 2.8e-25 119.4 228 36.8
Nitab4.5_0000180g0130 Nicotiana tabacum HOM05D001779 ORTHO05D001753 6.3e-25 118.2 83 67.5
Thecc.04G311700 Theobroma cacao HOM05D001779 ORTHO05D001753 1.1e-24 117.5 228 37.3
arahy.Tifrunner.gnm1.ann1.9BU3J2 Arachis hypogaea HOM05D000103 ORTHO05D000049 1.8e-24 116.7 228 36.4
arahy.Tifrunner.gnm1.ann1.ZP1L4J Arachis hypogaea HOM05D001779 ORTHO05D001753 1.8e-24 116.7 228 36.4
Lj6A699G68 Lonicera japonica HOM05D001779 ORTHO05D001753 2.4e-24 116.3 230 36.1
QL06p014037 Quercus lobata HOM05D001779 ORTHO05D001753 2.4e-24 116.3 228 37.3
Eucgr.A01491 Eucalyptus grandis HOM05D001779 ORTHO05D001753 4.1e-24 115.5 227 36.1
PGR031G1510 Punica granatum HOM05D001779 ORTHO05D001753 1.6e-23 113.6 228 35.1
FvH4_4g21400 Fragaria vesca HOM05D001779 ORTHO05D001753 2.0e-23 113.2 228 35.5
BcaC05g30026 Brassica carinata HOM05D001779 ORTHO05D001753 3.5e-23 112.5 230 33.9
Aa31LG5G16950 Aethionema arabicum HOM05D001779 ORTHO05D001753 4.5e-23 112.1 228 33.8
FAN12G4042 Fragaria x ananassa HOM05D001779 ORTHO05D001753 4.5e-23 112.1 228 35.5
VMungo1215G2020 Vigna mungo HOM05D001779 ORTHO05D001753 4.5e-23 112.1 228 35.5
A05p41600 Brassica napus HOM05D001779 ORTHO05D001753 5.9e-23 111.7 228 34.6
BraA05t22879Z Brassica rapa HOM05D001779 ORTHO05D001753 5.9e-23 111.7 228 34.6
TPR.G12657 Trifolium pratense HOM05D001779 ORTHO05D001753 7.7e-23 111.3 228 34.6
Potri.010G153900 Populus trichocarpa HOM05D001779 ORTHO05D001753 1.0e-22 110.9 228 35.5
Sc19g0002120 Simmondsia chinensis HOM05D001779 ORTHO05D001753 1.7e-22 110.2 228 32.9
BcaC05g29817 Brassica carinata HOM05D001779 ORTHO05D001753 2.2e-22 109.8 227 34.4
C05p60810 Brassica napus HOM05D001779 ORTHO05D001753 2.2e-22 109.8 227 34.4
BolC5t34738H Brassica oleracea HOM05D001779 ORTHO05D001753 2.2e-22 109.8 227 34.4
Glyma.17G039500 Glycine max HOM05D001779 ORTHO05D001753 2.2e-22 109.8 228 34.6
Phvul.003G120600 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 3.8e-22 109.0 228 34.2
CANSAT01G0558 Cannabis sativa HOM05D001779 ORTHO05D001753 5.0e-22 108.6 228 34.6
CARHR080960 Cardamine hirsuta HOM05D001779 ORTHO05D001753 5.0e-22 108.6 230 33.5
Medtr4g123860 Medicago truncatula HOM05D001779 ORTHO05D001753 6.5e-22 108.2 228 35.5
Sabra10G0118500 Salix brachista HOM05D001779 ORTHO05D001753 6.5e-22 108.2 228 35.1
AL3G17380 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 1.1e-21 107.5 228 33.8
Carub.0003s0587 Capsella rubella HOM05D001779 ORTHO05D001753 1.5e-21 107.1 228 33.3
AT3G06430 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 1.9e-21 106.7 228 33.8
Thhalv10020626m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 3.2e-21 105.9 228 32.5
Potri.008G098700 Populus trichocarpa HOM05D001779 ORTHO05D001753 3.2e-21 105.9 228 34.6
COL.COLO4_34526 Corchorus olitorius HOM05D001779 ORTHO05D001753 4.2e-21 105.5 228 35.1
Ca_21383_v3 Cicer arietinum L. HOM05D001779 ORTHO05D001753 7.2e-21 104.8 228 34.2
Sp3g05350 Schrenkiella parvula HOM05D001779 ORTHO05D001753 1.2e-20 104.0 228 32.0
Manes.03G211100 Manihot esculenta HOM05D001779 ORTHO05D001753 1.6e-20 103.6 160 42.5
Os03g0309800 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 2.3e-19 99.8 228 31.1
unitig_8.g2885 Utricularia gibba HOM05D001779 ORTHO05D001753 2.6e-18 96.3 71 63.4
PSO210G0586 Papaver somniferum HOM05D001779 ORTHO05D001753 1.7e-17 93.6 100 51.0
Solyc01g057200.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 8.3e-17 91.3 219 31.5
Zm00001eb298940 Zea mays HOM05D001779 ORTHO05D001753 3.1e-16 89.4 228 29.4
PSO761G0432 Papaver somniferum HOM05D001779 ORTHO05D001753 9.1e-16 87.8 100 49.0
GSVIVG01017677001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.5e-15 85.5 169 36.1
Lsat_1_v5_gn_1_39801 Lactuca sativa HOM05D001779 ORTHO05D001753 1.2e-12 77.4 63 52.4
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 2.3e-11 73.2 134 30.6
AL5G34050 Arabidopsis lyrata HOM05D001779 ORTHO05D001753 2.0e-10 70.1 112 33.0
Os03g0115300 Oryza sativa ssp. japonica HOM05D001779 ORTHO05D001753 7.5e-10 68.2 119 31.1
arahy.Tifrunner.gnm1.ann1.V5R8RT Arachis hypogaea HOM05D001779 ORTHO05D001753 6.3e-09 65.1 89 43.8
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 2.7e-07 59.7 96 34.4
SEGI_20018 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 3.5e-07 59.3 96 33.3
Lalb_Chr11g0073511 Lupinus albus HOM05D001779 ORTHO05D001753 5.9e-07 58.5 46 56.5
Gorai.007G155400 Gossypium raimondii HOM05D001779 ORTHO05D001753 7.7e-07 58.2 96 33.3
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.7e-07 58.2 96 32.3
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.7e-07 58.2 96 32.3
CAN.G582.4 Capsicum annuum HOM05D001779 ORTHO05D001753 1.0e-06 57.8 94 35.1
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 1.7e-06 57.0 95 31.6
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 3.8e-06 55.8 84 34.5
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 3.8e-06 55.8 95 30.5
GSVIVG01028689001 Vitis vinifera HOM05D001779 ORTHO05D001753 6.6e-06 55.1 95 31.6
Phvul.008G126700 Phaseolus vulgaris HOM05D001779 ORTHO05D001753 8.6e-06 54.7 95 31.6
VMungo1383G2648 Vigna mungo HOM05D001779 ORTHO05D001753 8.6e-06 54.7 95 31.6


User provided reference genes

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