Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.4e-75 284.3 145 100.0
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-67 259.2 145 89.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 8.1e-63 243.8 144 86.8
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.1e-62 243.4 145 85.5
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.0e-62 241.5 145 82.8
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.2e-62 241.1 145 82.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.3e-60 236.5 145 82.1
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 3.7e-60 235.0 145 81.4
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 3.7e-60 235.0 145 81.4
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 1.0e-57 226.9 145 84.1
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 6.6e-57 224.2 155 74.8
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 6.6e-57 224.2 155 76.1
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 6.6e-57 224.2 155 76.1
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.9e-56 222.6 155 74.2
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.9e-56 222.6 145 82.8
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.9e-56 222.6 155 74.8
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.3e-56 221.9 155 74.8
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 7.3e-56 220.7 155 74.8
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 7.3e-56 220.7 157 72.6
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.2e-55 219.9 145 83.4
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.1e-55 219.2 145 82.8
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.1e-55 219.2 145 81.4
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 2.1e-55 219.2 155 74.2
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.8e-55 218.8 155 73.5
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 2.8e-55 218.8 144 82.6
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 8.1e-55 217.2 157 74.5
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.1e-54 216.9 155 74.2
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.1e-54 216.9 155 72.9
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.1e-54 216.9 155 72.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.4e-54 215.7 155 72.9
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 3.1e-54 215.3 153 73.2
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 5.2e-54 214.5 155 74.2
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 5.2e-54 214.5 155 72.9
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.8e-54 214.2 155 72.9
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 1.2e-53 213.4 154 74.0
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.2e-53 213.4 155 71.6
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.5e-53 213.0 153 72.5
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 2.0e-53 212.6 154 73.4
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.4e-53 211.8 155 71.6
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 5.8e-53 211.1 155 71.6
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 9.9e-53 210.3 155 72.3
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 2.9e-52 208.8 154 72.1
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 6.4e-52 207.6 155 71.0
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 8.4e-52 207.2 145 72.4
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 8.4e-52 207.2 154 69.5
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 2.4e-51 205.7 155 71.0
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 2.4e-51 205.7 156 71.2
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 2.4e-51 205.7 156 70.5
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 4.1e-51 204.9 155 71.0
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 4.1e-51 204.9 156 70.5
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.2e-51 203.8 156 70.5
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 9.2e-51 203.8 156 70.5
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 1.2e-50 203.4 155 70.3
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 1.2e-50 203.4 146 73.3
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.1e-50 202.6 147 73.5
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 2.1e-50 202.6 141 75.2
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.7e-50 202.2 156 69.9
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 3.5e-50 201.8 151 72.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 3.5e-50 201.8 156 69.2
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 6.0e-50 201.1 155 67.7
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 7.8e-50 200.7 155 70.3
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 3.9e-49 198.4 156 68.6
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 1.1e-48 196.8 145 75.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.5e-48 196.4 155 69.0
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.3e-48 195.3 155 66.5
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 7.3e-48 194.1 155 70.3
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 9.6e-48 193.7 151 68.9
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 2.8e-47 192.2 155 69.7
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.7e-47 191.4 142 71.1
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.7e-47 191.4 170 64.1
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 4.0e-46 188.3 155 66.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 4.0e-46 188.3 160 64.4
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 6.9e-46 187.6 155 66.5
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 6.9e-46 187.6 151 69.5
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 5.8e-45 184.5 199 55.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 9.9e-45 183.7 167 62.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.7e-44 183.0 144 70.1
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.7e-44 183.0 152 69.1
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.2e-44 182.6 155 63.9
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.8e-44 181.8 151 65.6
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 4.9e-44 181.4 149 67.1
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 4.9e-44 181.4 220 50.0
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 6.4e-44 181.0 153 67.3
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 8.4e-44 180.6 155 63.2
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.1e-43 180.3 153 66.0
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.4e-43 179.9 157 64.3
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.2e-43 178.7 152 65.8
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 4.2e-43 178.3 128 75.0
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 4.2e-43 178.3 155 61.9
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 7.1e-43 177.6 153 65.4
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 3.5e-42 175.3 153 65.4
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.5e-42 175.3 147 66.0
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 6.0e-42 174.5 144 66.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.7e-41 172.9 156 64.1
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.3e-41 172.6 155 59.4
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 3.0e-41 172.2 151 65.6
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.1e-41 171.4 153 62.1
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 5.1e-41 171.4 153 62.1
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 6.6e-41 171.0 155 60.6
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.6e-41 171.0 155 61.9
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 8.7e-41 170.6 154 61.7
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.1e-40 170.2 154 61.7
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.5e-40 169.9 161 57.8
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.5e-40 169.1 154 62.3
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.3e-40 168.3 153 61.4
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 4.3e-40 168.3 155 61.9
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 9.6e-40 167.2 122 73.0
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 1.3e-39 166.8 153 61.4
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.3e-39 166.8 93 90.3
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.3e-39 166.8 154 61.7
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 1.6e-39 166.4 151 62.9
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.8e-39 164.9 154 58.4
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 6.2e-39 164.5 150 62.7
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 8.1e-39 164.1 155 58.7
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.1e-38 163.7 153 59.5
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 1.1e-38 163.7 150 60.7
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-38 163.3 144 62.5
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-38 163.3 144 62.5
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.5e-37 159.8 182 52.7
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.0e-37 159.5 129 68.2
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.6e-37 159.1 93 82.8
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.4e-37 158.7 152 59.2
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.9e-36 155.6 156 57.7
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 4.9e-36 154.8 151 58.9
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.9e-36 154.8 93 81.7
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 1.9e-35 152.9 267 40.4
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.4e-35 152.5 151 57.6
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.6e-34 149.8 180 53.3
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.6e-34 149.8 114 70.2
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 2.1e-34 149.4 141 61.0
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 2.1e-34 149.4 150 59.3
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 2.1e-34 149.4 150 59.3
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 2.1e-34 149.4 150 59.3
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.7e-34 149.1 153 56.9
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 3.5e-34 148.7 151 56.3
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 6.0e-34 147.9 146 58.9
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-33 146.4 93 82.8
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.8e-33 146.4 153 56.9
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 3.0e-33 145.6 150 56.7
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 3.9e-33 145.2 150 54.0
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 3.9e-33 145.2 117 68.4
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 3.9e-33 145.2 153 57.5
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.6e-32 140.6 116 63.8
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 9.6e-32 140.6 96 74.0
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 9.6e-32 140.6 145 57.9
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 2.8e-31 139.0 113 67.3
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.7e-31 138.7 144 54.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.7e-31 138.7 122 63.9
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 1.1e-30 137.1 143 55.2
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.8e-30 136.3 111 68.5
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 1.5e-29 133.3 149 53.7
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 2.0e-29 132.9 122 65.6
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.6e-29 132.5 102 66.7
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 7.6e-29 131.0 101 68.3
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.7e-28 129.8 99 67.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.2e-28 129.4 174 47.7
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 6.4e-28 127.9 123 59.3
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 9.3e-27 124.0 156 48.7
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.0e-25 120.6 75 78.7
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.3e-25 120.2 92 66.3
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.9e-24 116.3 155 47.1
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-21 107.1 145 49.0
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.7e-20 103.2 167 43.7
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 1.9e-19 99.8 75 65.3
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 3.0e-17 92.4 89 61.8
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 5.1e-17 91.7 89 61.8
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.7e-17 91.3 75 56.0
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 9.7e-16 87.4 89 57.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 3.7e-15 85.5 61 68.9
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 1.2e-13 80.5 130 40.0
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 7.7e-13 77.8 52 73.1
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 3.8e-12 75.5 41 85.4
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.1e-11 73.9 65 58.5
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.2e-11 72.0 46 71.7
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.2e-11 72.0 65 58.5
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.4e-09 67.0 67 47.8
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.7e-09 64.7 75 48.0
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 4.3e-08 62.0 41 73.2
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 4.8e-07 58.5 89 41.6
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.3e-07 58.2 70 44.3


User provided reference genes

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