Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 1.8e-207 725.7 371 100.0
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.1e-159 567.0 358 83.2
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 5.0e-149 531.6 364 75.8
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 6.5e-149 531.2 347 80.4
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 3.2e-148 528.9 355 77.2
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 4.2e-148 528.5 371 74.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.2e-147 526.9 357 77.0
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.6e-147 526.6 362 74.9
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.0e-146 523.9 363 76.0
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 3.0e-146 522.3 356 75.3
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 5.1e-146 521.5 362 76.2
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.5e-145 520.0 363 74.9
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 2.5e-145 519.2 367 74.7
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.5e-145 519.2 357 75.4
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 9.7e-145 517.3 357 75.4
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 1.3e-144 516.9 358 75.4
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.3e-144 516.9 354 75.1
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 1.3e-144 516.9 366 72.7
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 2.2e-144 516.2 352 76.1
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 2.2e-144 516.2 360 75.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.8e-144 515.8 362 73.5
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 2.8e-144 515.8 348 76.7
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 2.8e-144 515.8 364 74.2
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 8.2e-144 514.2 359 75.5
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 8.2e-144 514.2 350 76.6
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 8.2e-144 514.2 356 75.0
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 1.1e-143 513.8 372 72.6
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 1.4e-143 513.5 353 75.6
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 1.8e-143 513.1 368 74.5
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 3.1e-143 512.3 370 73.0
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 9.0e-143 510.8 366 73.0
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 2.0e-142 509.6 369 73.2
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 2.6e-142 509.2 356 75.0
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 4.5e-142 508.4 350 76.3
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.3e-141 506.9 371 72.2
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 2.9e-141 505.8 366 71.6
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 6.5e-141 504.6 356 74.4
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 6.5e-141 504.6 369 72.6
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 6.5e-141 504.6 364 71.4
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 1.4e-140 503.4 396 68.7
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 2.5e-140 502.7 358 74.3
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.5e-140 502.7 370 72.4
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.5e-140 501.5 361 73.1
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 7.2e-140 501.1 366 71.9
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 2.7e-139 499.2 381 70.1
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.6e-139 498.8 361 72.6
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 7.9e-139 497.7 357 72.8
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 7.9e-139 497.7 366 71.3
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 8.8e-138 494.2 355 73.0
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.3e-136 490.3 366 73.0
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.7e-136 490.0 343 74.9
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 2.8e-136 489.2 366 70.8
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 4.8e-136 488.4 361 70.9
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 4.8e-136 488.4 339 74.0
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.4e-135 486.9 360 69.4
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 6.9e-135 484.6 359 70.5
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 9.1e-135 484.2 372 68.3
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 1.2e-134 483.8 361 70.4
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 2.0e-134 483.0 369 69.4
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 2.0e-134 483.0 358 70.9
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.8e-133 478.8 358 69.8
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 6.5e-133 478.0 354 70.1
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 1.4e-132 476.9 362 68.5
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 3.2e-132 475.7 341 71.3
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 2.7e-131 472.6 355 69.6
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.7e-131 472.6 361 67.6
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 6.1e-131 471.5 365 68.2
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 6.1e-131 471.5 359 68.2
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.4e-130 470.3 361 67.3
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 1.8e-130 469.9 354 69.5
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 2.0e-129 466.5 368 67.4
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 2.0e-129 466.5 368 67.4
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 2.0e-129 466.5 368 67.4
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.0e-129 466.5 372 67.5
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 2.6e-129 466.1 368 66.6
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 2.6e-129 466.1 374 67.6
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 2.6e-129 466.1 368 66.6
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 2.6e-129 466.1 368 66.6
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 3.3e-129 465.7 360 67.2
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 1.7e-128 463.4 367 66.5
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 1.7e-128 463.4 367 66.5
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 2.2e-128 463.0 359 68.0
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 2.2e-128 463.0 367 65.9
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 1.1e-127 460.7 363 67.2
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.1e-127 460.7 363 67.2
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 1.4e-127 460.3 345 68.4
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 4.1e-127 458.8 356 66.6
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 7.0e-127 458.0 367 66.8
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 7.0e-127 458.0 356 66.6
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 7.0e-127 458.0 367 66.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.2e-126 457.2 355 66.5
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 2.0e-126 456.4 361 68.7
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.0e-126 456.4 368 66.3
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.0e-126 456.4 351 67.8
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 2.6e-126 456.1 367 65.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 7.7e-126 454.5 348 70.1
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 2.9e-125 452.6 368 65.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 2.9e-125 452.6 346 70.2
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 3.8e-125 452.2 367 64.9
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 8.5e-125 451.1 365 66.0
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 8.5e-125 451.1 314 75.8
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 8.5e-125 451.1 367 65.7
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.9e-124 449.9 363 65.8
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 2.2e-120 436.4 348 65.8
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 8.2e-120 434.5 358 65.4
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.9e-117 426.0 314 69.7
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.1e-115 419.9 369 63.1
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.3e-114 416.4 345 63.8
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.0e-113 413.3 352 63.9
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 7.2e-108 394.8 273 74.0
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.2e-107 394.0 304 70.7
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 6.8e-106 388.3 274 73.0
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 1.8e-103 380.2 301 67.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.9e-102 375.2 351 61.3
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 2.9e-101 372.9 355 54.9
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 8.6e-101 371.3 361 56.0
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 1.2e-99 367.5 365 53.4
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 3.6e-99 365.9 371 56.3
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 8.0e-99 364.8 322 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 2.7e-94 349.7 344 53.5
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.5e-94 349.4 277 67.9
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 4.6e-94 349.0 344 52.0
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 9.5e-92 341.3 273 66.7
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 6.6e-85 318.5 285 63.2
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 2.0e-81 307.0 313 53.4
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 2.3e-69 266.9 336 41.7
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 8.6e-69 265.0 165 82.4
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 2.1e-67 260.4 365 45.5
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.1e-67 260.4 193 69.9
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.5e-65 254.2 345 41.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 7.6e-49 198.7 177 59.9
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 9.3e-47 191.8 269 39.8
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 7.9e-46 188.7 112 81.2
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.7e-40 171.0 310 35.2
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.0e-37 161.8 231 43.7
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.5e-36 157.1 102 74.5
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 7.4e-36 155.6 102 73.5
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 7.4e-36 155.6 102 73.5
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 9.6e-36 155.2 110 73.6
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 6.3e-35 152.5 421 29.5
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.8e-34 151.0 131 63.4
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 3.4e-33 146.7 114 71.9
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 1.0e-32 145.2 95 81.1
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-20 104.4 80 70.0
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.6e-20 104.0 66 78.8
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.2e-19 100.9 98 58.2
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.0e-17 94.4 54 83.3
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-16 91.7 57 78.9
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 5.5e-15 86.3 51 86.3
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.6e-14 84.7 48 83.3
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.6e-14 84.7 48 83.3
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.6e-06 58.2 80 42.5


User provided reference genes

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